Rh6DG508000

Peroxisome biogenesis factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005456
Physical Location & Seq
Reverse (-)
66173717 .. 66177291
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG508000.1

Sequence Viewer

Length: 936 bp
ATGAGTAGTAACGAAACAACCGGGTCGGGCCAGCAGGCCGGGCCGAGCGGAGGAGAAGCGGGTCCCAGCAGTAGCAGCAACCCGAGCGCAGCACGCCGTTTCCCACTGGCGGCTCAGCCGGAGGTCATGAGAGCCGCCGAAAAGGACGACCAGTACGCCTCCTTCGTCTACGACGCTTGCCGCGACGCCTTCCGCCACCTCTTTGGTACAAGAATTGCTGTGGCTTACCAGAACGAGACAAAGCTTCTCGGGCAAATGCTCTATTACATTTTGACTACAGGGTCGGGCCAGCAAACCCTGGGAGAAGAGTACTGCGATATCACTCAGGTTGCAGGGCCCTATGGGCTGCCTCCAACACCAGCAAGGCGTGCACTTTTCATTGTGTACCAGACGGCTCTTCCTTATATTGCAGAAAGAATTAGTTCTCGAGCTGCTAATCGTGGCATTCTCCTTGCTGATTCCCAGTCTGATCAGGTTTACAGCATCAGTGCTTTGATGAGCAATGATGCTCAGTCTTCTTCAAGCACTCGTGCCGTGTCTTCCTCCACGCCGCCGGCGTCTGCTTCAGCTCTCAAAAGATTGAAGCAGAGATTGAATGCATTGTGGCTTTCTGCAGTTCGGAAATGGCCTACGGTTCTCCCTATAGCTCGAGAGTTTTTGCAATTGATTATACGTGCCAACCTGATGTTCTTTTACTTTGAAGGTCTCTATTATCATATATCGAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAACCATCTAACCAAAGGCCTAGATACCAAATTCTGGGCATATTCCTACTGATTCAGCTTTGTATCATTGCTGCTGAAGGACTACGGCGTAGCAATTTATCCTCTATAGCAACTTCAGCTCAGCAGACCTTTGGTGCACACCAAACTTCATCAGGTCAATATCTTCATAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

311

Amino Acids

34.03

Weight (kDa)

9.68

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex2_Pex12 PF04757 49 - 282 4.4e-43 Pex2 / Pex12 amino terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 793
AccBSI CCGCTC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 168
AccII CGCG 1 cut(s) 183
AciI CCGC 7 cut(s) 48, 59, 110, 135, 181, 193, 551
AcsI RAATTY 1 cut(s) 789
AcuI CTGAAG 3 cut(s) 549, 855, 858
AcyI GRCGYC 2 cut(s) 186, 557
AfaI GTAC 4 cut(s) 155, 208, 311, 386
AfiI CCNNNNNNNGG 3 cut(s) 50, 109, 793
AgsI TTSAA 4 cut(s) 522, 583, 595, 701
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AluBI AGCT 6 cut(s) 244, 431, 569, 647, 817, 878
AluI AGCT 6 cut(s) 244, 431, 569, 647, 817, 878
Alw21I GWGCWC 2 cut(s) 373, 898
Alw26I GTCTC 2 cut(s) 230, 710
Alw44I GTGCAC 2 cut(s) 369, 894
Ama87I CYCGRG 4 cut(s) 82, 248, 426, 648
AoxI GGCC 7 cut(s) 28, 36, 41, 286, 335, 626, 776
ApaI GGGCCC 1 cut(s) 339
ApaLI GTGCAC 2 cut(s) 369, 894
ApeKI GCWGC 6 cut(s) 75, 89, 346, 431, 731, 830
ApoI RAATTY 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 421
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 6 cut(s) 28, 41, 62, 286, 335, 336
AsuC2I CCSGG 2 cut(s) 22, 40
AvaI CYCGRG 4 cut(s) 82, 248, 426, 648
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 3 cut(s) 339, 373, 898
BanII GRGCYC 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 2 cut(s) 507, 531
Bbv12I GWGCWC 2 cut(s) 373, 898
BbvI GCAGC 6 cut(s) 87, 101, 333, 418, 718, 817
BccI CCATC 1 cut(s) 772
BceAI ACGGC 4 cut(s) 81, 408, 518, 860
BciT130I CCWGG 1 cut(s) 299
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 2 cut(s) 22, 40
BcoDI GTCTC 2 cut(s) 230, 710
BfaI CTAG 1 cut(s) 780
BfmI CTRYAG 5 cut(s) 276, 612, 642, 732, 864
BglI GCCNNNNNGGC 1 cut(s) 343
BlpI GCTNAGC 2 cut(s) 114, 879
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 3 cut(s) 22, 40, 299
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 4 cut(s) 82, 248, 426, 648
BmgT120I GGNCC 6 cut(s) 28, 41, 62, 286, 335, 336
BmiI GGNNCC 3 cut(s) 63, 64, 337
BmrFI CCNGG 3 cut(s) 22, 40, 299
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 2 cut(s) 492, 496
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 2 cut(s) 507, 531
Bpu1102I GCTNAGC 2 cut(s) 114, 879
BpuMI CCSGG 2 cut(s) 22, 40
BsaAI YACGTR 1 cut(s) 674
BsaHI GRCGYC 2 cut(s) 186, 557
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 2 cut(s) 297, 298
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 109, 793
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 3 cut(s) 111, 151, 463
Bse3DI GCAATG 2 cut(s) 508, 825
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 297, 298
BseLI CCNNNNNNNGG 3 cut(s) 50, 109, 793
BseMI GCAATG 2 cut(s) 508, 825
BseMII CTCAG 4 cut(s) 128, 338, 524, 893
BseNI ACTGG 3 cut(s) 111, 151, 463
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 3 cut(s) 339, 373, 898
BseXI GCAGC 6 cut(s) 87, 101, 333, 418, 718, 817
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 7 cut(s) 30, 38, 43, 288, 337, 628, 778
BsiHKAI GWGCWC 2 cut(s) 373, 898
BsiHKCI CYCGRG 4 cut(s) 82, 248, 426, 648
BsiSI CCGG 4 cut(s) 21, 39, 119, 554
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 3 cut(s) 50, 109, 793
BsmAI GTCTC 2 cut(s) 230, 710
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 3 cut(s) 444, 601, 738
BsnI GGCC 7 cut(s) 30, 38, 43, 288, 337, 628, 778
Bso31I GGTCTC 1 cut(s) 710
BsoBI CYCGRG 4 cut(s) 82, 248, 426, 648
Bsp120I GGGCCC 1 cut(s) 335
Bsp1286I GDGCHC 3 cut(s) 339, 373, 898
Bsp143I GATC 1 cut(s) 469
Bsp1720I GCTNAGC 2 cut(s) 114, 879
BspACI CCGC 7 cut(s) 48, 59, 110, 135, 181, 193, 551
BspANI GGCC 7 cut(s) 30, 38, 43, 288, 337, 628, 778
BspCNI CTCAG 4 cut(s) 127, 337, 523, 892
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 63, 64, 337
BspMAI CTGCAG 2 cut(s) 616, 736
BspQI GCTCTTC 1 cut(s) 402
BspTNI GGTCTC 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 48
BsrDI GCAATG 2 cut(s) 508, 825
BsrFI RCCGGY 1 cut(s) 553
BsrI ACTGG 3 cut(s) 111, 151, 463
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 2 cut(s) 297, 298
BssMI GATC 1 cut(s) 469
BssNI GRCGYC 2 cut(s) 186, 557
BssSI CACGAG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 634
Bst6I CTCTTC 2 cut(s) 300, 402
BstACI GRCGYC 2 cut(s) 186, 557
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 8 cut(s) 32, 36, 94, 178, 290, 369, 555, 736
BstDEI CTNAG 4 cut(s) 114, 324, 510, 879
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 2 cut(s) 230, 710
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 8 cut(s) 40, 75, 84, 93, 250, 343, 368, 875
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 3 cut(s) 20, 38, 297
BstSFI CTRYAG 5 cut(s) 276, 612, 642, 732, 864
BstSLI GKGCMC 3 cut(s) 339, 373, 898
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 6 cut(s) 87, 101, 333, 418, 718, 817
BstV2I GAAGAC 2 cut(s) 507, 531
BstXI CCANNNNNNTGG 1 cut(s) 203
BsuRI GGCC 7 cut(s) 30, 38, 43, 288, 337, 628, 778
BtsIMutI CAGTG 2 cut(s) 104, 493
Cac8I GCNNGC 8 cut(s) 32, 36, 94, 178, 290, 369, 555, 736
CciI TCATGA 1 cut(s) 126
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 553
Cfr13I GGNCC 6 cut(s) 28, 41, 62, 286, 335, 336
CseI GACGC 3 cut(s) 182, 194, 546
Csp6I GTAC 4 cut(s) 154, 207, 310, 385
CviAII CATG 1 cut(s) 127
CviQI GTAC 4 cut(s) 154, 207, 310, 385
DdeI CTNAG 4 cut(s) 114, 324, 510, 879
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
Eam1104I CTCTTC 2 cut(s) 300, 402
EarI CTCTTC 2 cut(s) 300, 402
EciI GGCGGA 1 cut(s) 182
Eco147I AGGCCT 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 710
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 3 cut(s) 549, 855, 858
Eco88I CYCGRG 4 cut(s) 82, 248, 426, 648
EcoO109I RGGNCCY 3 cut(s) 62, 335, 336
EcoRII CCWGG 1 cut(s) 297
EcoRV GATATC 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 1 cut(s) 130
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 126
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 1 cut(s) 469
FblI GTMKAC 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 339
FspBI CTAG 1 cut(s) 780
GlaI GCGC 1 cut(s) 88
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 7 cut(s) 30, 38, 43, 288, 337, 628, 778
HapII CCGG 4 cut(s) 21, 39, 119, 554
HgaI GACGC 3 cut(s) 182, 194, 546
HhaI GCGC 1 cut(s) 89
Hin1I GRCGYC 2 cut(s) 186, 557
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 2 cut(s) 458, 811
HpaII CCGG 4 cut(s) 21, 39, 119, 554
Hpy166II GTNNAC 5 cut(s) 169, 371, 385, 478, 896
Hpy188I TCNGA 2 cut(s) 469, 621
Hpy188III TCNNGA 3 cut(s) 127, 426, 650
Hpy8I GTNNAC 5 cut(s) 169, 371, 385, 478, 896
Hpy99I CGWCG 2 cut(s) 176, 188
HpyAV CCTTC 4 cut(s) 172, 199, 695, 830
HpyCH4III ACNGT 1 cut(s) 634
HpyCH4IV ACGT 2 cut(s) 673, 727
HpyCH4V TGCA 8 cut(s) 332, 371, 410, 599, 614, 661, 734, 896
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 75, 84, 93, 250, 343, 368, 875
HpyF3I CTNAG 4 cut(s) 114, 324, 510, 879
HpySE526I ACGT 2 cut(s) 673, 727
Hsp92I GRCGYC 2 cut(s) 186, 557
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 87
KflI GGGWCCC 1 cut(s) 62
KroI GCCGGC 1 cut(s) 553
KroNI GCCGGC 1 cut(s) 555
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 1 cut(s) 469
LguI GCTCTTC 1 cut(s) 402
Lsp1109I GCAGC 6 cut(s) 87, 101, 333, 418, 718, 817
LweI GCATC 2 cut(s) 492, 496
MaeI CTAG 1 cut(s) 780
MaeII ACGT 2 cut(s) 673, 727
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 471
MbiI CCGCTC 1 cut(s) 48
MboI GATC 1 cut(s) 469
MboII GAAGA 6 cut(s) 317, 389, 507, 510, 531, 914
MfeI CAATTG 1 cut(s) 662
MhlI GDGCHC 3 cut(s) 339, 373, 898
MluCI AATT 5 cut(s) 213, 417, 662, 789, 853
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 7 cut(s) 44, 115, 169, 209, 360, 553, 871
Mph1103I ATGCAT 1 cut(s) 601
MreI CGCCGGCG 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 421
MspI CCGG 4 cut(s) 21, 39, 119, 554
MspR9I CCNGG 3 cut(s) 22, 40, 299
MunI CAATTG 1 cut(s) 662
Mva1269I GAATGC 3 cut(s) 444, 601, 738
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 8 cut(s) 40, 75, 84, 93, 250, 343, 368, 875
NaeI GCCGGC 1 cut(s) 555
NciI CCSGG 2 cut(s) 22, 40
NdeII GATC 1 cut(s) 469
NgoMIV GCCGGC 1 cut(s) 553
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 3 cut(s) 63, 64, 337
NmeAIII GCCGAG 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 601
PaeR7I CTCGAG 2 cut(s) 426, 648
PagI TCATGA 1 cut(s) 126
PasI CCCWGGG 1 cut(s) 298
PceI AGGCCT 1 cut(s) 778
PciSI GCTCTTC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 180, 554
PctI GAATGC 3 cut(s) 444, 601, 738
PdiI GCCGGC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 421
PfeI GAWTC 2 cut(s) 458, 811
PflMI CCANNNNNTGG 1 cut(s) 793
Ppu21I YACGTR 1 cut(s) 674
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 63, 64, 337
PspOMI GGGCCC 1 cut(s) 335
PspPI GGNCC 6 cut(s) 28, 41, 62, 286, 335, 336
PspPPI RGGWCCY 1 cut(s) 62
PstI CTGCAG 2 cut(s) 616, 736
RsaI GTAC 4 cut(s) 155, 208, 311, 386
RsaNI GTAC 4 cut(s) 154, 207, 310, 385
SapI GCTCTTC 1 cut(s) 402
Sau3AI GATC 1 cut(s) 469
Sau96I GGNCC 6 cut(s) 28, 41, 62, 286, 335, 336
ScaI AGTACT 1 cut(s) 311
ScrFI CCNGG 3 cut(s) 22, 40, 299
SduI GDGCHC 3 cut(s) 339, 373, 898
SfaNI GCATC 2 cut(s) 492, 496
SfcI CTRYAG 5 cut(s) 276, 612, 642, 732, 864
Sfr274I CTCGAG 2 cut(s) 426, 648
SgrAI CRCCGGYG 1 cut(s) 553
SinI GGWCC 1 cut(s) 62
SlaI CTCGAG 2 cut(s) 426, 648
SmlI CTYRAG 2 cut(s) 426, 648
SmoI CTYRAG 2 cut(s) 426, 648
Sse9I AATT 5 cut(s) 213, 417, 662, 789, 853
SseBI AGGCCT 1 cut(s) 778
SsiI CCGC 7 cut(s) 48, 59, 110, 135, 181, 193, 551
SspMI CTAG 1 cut(s) 780
StuI AGGCCT 1 cut(s) 778
StyD4I CCNGG 3 cut(s) 20, 38, 297
TaaI ACNGT 1 cut(s) 634
TaiI ACGT 2 cut(s) 676, 730
TaqI TCGA 3 cut(s) 427, 649, 722
TasI AATT 5 cut(s) 213, 417, 662, 789, 853
TatI WGTACW 1 cut(s) 309
TauI GCSGC 4 cut(s) 113, 137, 183, 553
TfiI GAWTC 2 cut(s) 458, 811
TscAI CASTG 2 cut(s) 111, 493
TseI GCWGC 6 cut(s) 75, 89, 346, 431, 731, 830
TspDTI ATGAA 4 cut(s) 367, 742, 897, 914
TspRI CASTG 2 cut(s) 111, 493
Van91I CCANNNNNTGG 1 cut(s) 793
VneI GTGCAC 2 cut(s) 369, 894
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 789
XhoI CTCGAG 2 cut(s) 426, 648
XmiI GTMKAC 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 421
XspI CTAG 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.