AT2G26470

SOS response associated peptidase (SRAP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013250
Physical Location & Seq
Reverse (-)
11259142 .. 11262586
3445 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26470.1

Sequence Viewer

Length: 1464 bp
ATGTGCGGTAGGACTCGATGTACTTTAAGACCCGACGATGTCCCCAGAGCTTCTCACCGCCACACCGTTCCTACCCGATTTCTTCACCTCGACCGTTATCGTCCATCTTACAATGTTGCCCCTGGATCCTATATACCTGTTCTACGGAGAGACAATGAAGAAGTTGTTGGTGATGGTGTTGTTGTTCATTGTATGAAGTGGGGATTAGTGCCAAGTTTCACTAAGAAAACTGATAAGCCTGATTTCTTCAAAATGTTTAATGCTCGGTCTGAATCTGTGGCTGAGAAAGCGTCTTTTCGTCGATTGCTTCCCAAGAATAGGTGCCTTGTTGCAGTTGATGGGTTCTATGAGTGGAAGAAGGAAGGTTCAAAAAAGCAACCCTACTACATCCATTTTGAGGATGGGAGACCTCTCGTATTTGCTGCTCTTTTTGATACTTGGCAGAACTCAGGAGGTGAGACACTTTACACCTTTACGATTTTGACAACCGCTTCCTCTTCAGCCCTCCAATGGCTCCATGACAGAATGCCTGTAATTCTTGGTGATAAGGATTCAATCGACACATGGTTAGATGATCCCTCGACAACGAAACTGCAGCCATTACTTTCACCATATGAAAAATCGGATTTGGTATGGTATCCAGTAACCTCTGCAATTGGTAAACCAACGTTTGATGGACCAGAGTGTATTCAACAGATACCGCTAAAGACTTCACAAAATAGCTTGATCTCGAAGTTTTTCTCAACAAAGCAGCCCAAAACAGATGAAGGAGACAAAGAAACCAAATCAACAGATGCAAATATCATAGTTGATTTGAAAAAGGAACCTACGGCTGAAAAGGACACGTTTTCTGACAGCATTAAGAAAATTGAAGAACTAGACGGGGAGAAAGATATGTCGAATGTAGCCAAAAATCTGGAGTTTCAAGAGATTGTGAAAGCAGAACCATTTGTTGAAGATAACTCAGCAGTTGCGTCACTTCCTGAACCTGTAAAGAATGATGTTCAGGAGGGTACAAAGGAAGAAGGCAAATCCCTAAAGACTGGTCTTACTAAAGAAACAGGTGAGAGCAGTGCCAGTATACCGGCTGAGTCCTACATCCTTGATCTCCAAAGAATCTCAAAAGAAGAACCCGAGACTCAAAGCCATCATTTCTTTACTGCAGATGAGAGATTGAATCAGCTGCATGAGGCTGTCGAAGATATTCCAGGAAATGAAAACCAGAAGACAGTTTTAACTAGCCCGACGACGAAGGAAGGTGGCTTAGTGTTTAGCGAAAAGAGTGGGACAAAGCGAGACTATGAGGTATTCTCAGCTCAAGAAAAGCCACAGAAACACTATGAGAGGTTGCAAAATGTTAAAAGCAGTGGGAAACAAGGAAAGATGCATGGAATGGGGAAATCTAACATCAAGAAATCTAAGGAGACGCAGTCTACATTACATTTCTTTTTCGATGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRAP

Protein Analysis

487

Amino Acids

55.09

Weight (kDa)

6.13

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRAP PF02586 1 - 222 1.4e-71 SOS response associated peptidase (SRAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013250)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26470 AT2G26470
fragaria_vesca FvH4_2g17880 FvH4_2g17880 FvH4_2g17880
malus_domestica MD05G1163100.v1.1
prunus_persica Prupe.8G191400_v2.0.a1
pyrus_communis pycom05g15260
rosa_chinensis RchiOBHm_Chr6g0283131
rosa_laevigata RLG00000012842
rosa_roxburghii Rroxscaffold_7G00185750
rosa_rugosa Rorug06G0151500.1 Rorug06G0151600
rosa_samantha Rh6AG264400 Rh6BG267300 Rh6CG266300 Rh6DG259600
rosa_wichuraiana Rw6G022880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 321
AccI GTMKAC 2 cut(s) 1081, 1433
AciI CCGC 4 cut(s) 6, 58, 489, 701
AclI AACGTT 1 cut(s) 668
AclWI GGATC 3 cut(s) 120, 133, 569
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 2 cut(s) 22, 1015
AfiI CCNNNNNNNGG 3 cut(s) 318, 397, 510
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 9 cut(s) 250, 369, 555, 692, 817, 872, 926, 956, 1177
AjnI CCWGG 2 cut(s) 121, 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 4 cut(s) 50, 723, 1183, 1316
AluI AGCT 4 cut(s) 50, 723, 1183, 1316
Alw26I GTCTC 7 cut(s) 144, 400, 452, 765, 1130, 1290, 1418
AlwI GGATC 3 cut(s) 120, 133, 569
Ama87I CYCGRG 1 cut(s) 1133
ApeKI GCWGC 4 cut(s) 422, 595, 751, 1183
Asp700I GAANNNNTTC 2 cut(s) 737, 1203
AspS9I GGNCC 1 cut(s) 677
AsuHPI GGTGA 7 cut(s) 47, 77, 182, 467, 554, 600, 1076
AvaI CYCGRG 1 cut(s) 1133
AvaII GGWCC 1 cut(s) 677
BamHI GGATCC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 1232
BbvI GCAGC 4 cut(s) 409, 607, 763, 1170
BccI CCATC 6 cut(s) 112, 167, 332, 395, 668, 1155
BceAI ACGGC 1 cut(s) 846
BciT130I CCWGG 2 cut(s) 123, 1209
BciVI GTATCC 1 cut(s) 648
BcoDI GTCTC 7 cut(s) 144, 400, 452, 765, 1130, 1290, 1418
BfaI CTAG 2 cut(s) 878, 1239
BfmI CTRYAG 2 cut(s) 593, 1161
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 4 cut(s) 423, 596, 752, 1184
BlsI GCNGC 4 cut(s) 424, 597, 753, 1185
Bme1390I CCNGG 2 cut(s) 123, 1209
Bme18I GGWCC 1 cut(s) 677
BmeT110I CYCGRG 1 cut(s) 1133
BmgT120I GGNCC 1 cut(s) 677
BmiI GGNNCC 4 cut(s) 127, 323, 515, 825
BmrFI CCNGG 2 cut(s) 123, 1209
BmsI GCATC 2 cut(s) 784, 1374
BpiI GAAGAC 1 cut(s) 1232
BplI GAGNNNNNCTC 2 cut(s) 1295, 1327
BpmI CTGGAG 1 cut(s) 938
BpuEI CTTGAG 1 cut(s) 1302
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 1415, 1445
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 397, 510
Bse118I RCCGGY 1 cut(s) 1084
Bse1I ACTGG 3 cut(s) 641, 1048, 1077
BseBI CCWGG 2 cut(s) 123, 1209
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 3 cut(s) 387, 406, 1098
BseLI CCNNNNNNNGG 3 cut(s) 318, 397, 510
BseMII CTCAG 5 cut(s) 273, 462, 978, 1080, 1326
BseNI ACTGG 3 cut(s) 641, 1048, 1077
BseXI GCAGC 4 cut(s) 409, 607, 763, 1170
Bsh1285I CGRYCG 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 1133
BsiSI CCGG 1 cut(s) 1085
BslFI GGGAC 2 cut(s) 26, 1300
BslI CCNNNNNNNGG 3 cut(s) 318, 397, 510
BsmAI GTCTC 7 cut(s) 144, 400, 452, 765, 1130, 1290, 1418
BsmBI CGTCTC 1 cut(s) 1418
BsmFI GGGAC 2 cut(s) 26, 1300
BsmI GAATGC 1 cut(s) 531
Bso31I GGTCTC 1 cut(s) 400
BsoBI CYCGRG 1 cut(s) 1133
Bsp143I GATC 4 cut(s) 125, 574, 726, 1105
BspACI CCGC 4 cut(s) 6, 58, 489, 701
BspCNI CTCAG 5 cut(s) 274, 461, 977, 1081, 1325
BspLI GGNNCC 4 cut(s) 127, 323, 515, 825
BspMAI CTGCAG 2 cut(s) 597, 1165
BspPI GGATC 3 cut(s) 120, 133, 569
BspT107I GGYRCC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 400
BsrFI RCCGGY 1 cut(s) 1084
BsrI ACTGG 3 cut(s) 641, 1048, 1077
BssAI RCCGGY 1 cut(s) 1084
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 4 cut(s) 125, 574, 726, 1105
BssNAI GTATAC 1 cut(s) 1082
Bst1107I GTATAC 1 cut(s) 1082
Bst2UI CCWGG 2 cut(s) 123, 1209
Bst4CI ACNGT 3 cut(s) 67, 95, 1231
Bst6I CTCTTC 1 cut(s) 502
BstDEI CTNAG 8 cut(s) 222, 282, 448, 964, 1089, 1264, 1312, 1419
BstF5I GGATG 3 cut(s) 387, 406, 1098
BstKTI GATC 4 cut(s) 128, 577, 729, 1108
BstMAI GTCTC 7 cut(s) 144, 400, 452, 765, 1130, 1290, 1418
BstMBI GATC 4 cut(s) 125, 574, 726, 1105
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 2 cut(s) 123, 1209
BstSCI CCNGG 2 cut(s) 121, 1207
BstSFI CTRYAG 2 cut(s) 593, 1161
BstV1I GCAGC 4 cut(s) 409, 607, 763, 1170
BstV2I GAAGAC 1 cut(s) 1232
BstX2I RGATCY 1 cut(s) 125
BstXI CCANNNNNNTGG 1 cut(s) 916
BstYI RGATCY 1 cut(s) 125
BstZ17I GTATAC 1 cut(s) 1082
BsuI GTATCC 1 cut(s) 648
BtsCI GGATG 3 cut(s) 387, 406, 1098
BtsI GCAGTG 2 cut(s) 1078, 1372
BtsIMutI CAGTG 2 cut(s) 1078, 1372
Cfr10I RCCGGY 1 cut(s) 1084
Cfr13I GGNCC 1 cut(s) 677
CseI GACGC 3 cut(s) 279, 963, 1435
Csp6I GTAC 2 cut(s) 21, 1014
CviAII CATG 4 cut(s) 518, 564, 1187, 1388
CviQI GTAC 2 cut(s) 21, 1014
DdeI CTNAG 8 cut(s) 222, 282, 448, 964, 1089, 1264, 1312, 1419
DpnI GATC 4 cut(s) 127, 576, 728, 1107
DpnII GATC 4 cut(s) 125, 574, 726, 1105
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 677
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 1133
EcoRII CCWGG 2 cut(s) 121, 1207
EcoT22I ATGCAT 1 cut(s) 1389
Esp3I CGTCTC 1 cut(s) 1418
FaeI CATG 4 cut(s) 521, 567, 1190, 1391
FaqI GGGAC 2 cut(s) 26, 1300
FatI CATG 4 cut(s) 517, 563, 1186, 1387
FauNDI CATATG 1 cut(s) 613
FblI GTMKAC 2 cut(s) 1081, 1433
Fnu4HI GCNGC 4 cut(s) 423, 596, 752, 1184
FokI GGATG 3 cut(s) 374, 413, 1085
Fsp4HI GCNGC 4 cut(s) 423, 596, 752, 1184
FspBI CTAG 2 cut(s) 878, 1239
GluI GCNGC 4 cut(s) 423, 596, 752, 1184
GsuI CTGGAG 1 cut(s) 938
HapII CCGG 1 cut(s) 1085
HgaI GACGC 3 cut(s) 279, 963, 1435
Hin1II CATG 4 cut(s) 521, 567, 1190, 1391
HinfI GANTC 7 cut(s) 13, 272, 551, 1091, 1116, 1138, 1177
HpaII CCGG 1 cut(s) 1085
HphI GGTGA 7 cut(s) 47, 77, 182, 467, 554, 600, 1076
Hpy166II GTNNAC 3 cut(s) 662, 1082, 1434
Hpy188I TCNGA 3 cut(s) 271, 625, 853
Hpy188III TCNNGA 8 cut(s) 450, 730, 917, 926, 983, 1007, 1319, 1411
Hpy8I GTNNAC 3 cut(s) 662, 1082, 1434
Hpy99I CGWCG 4 cut(s) 38, 303, 1249, 1252
HpyAV CCTTC 6 cut(s) 352, 356, 761, 1019, 1246, 1250
HpyCH4III ACNGT 3 cut(s) 67, 95, 1231
HpyCH4IV ACGT 2 cut(s) 668, 845
HpyCH4V TGCA 8 cut(s) 332, 595, 653, 797, 1163, 1186, 1351, 1387
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 8 cut(s) 222, 282, 448, 964, 1089, 1264, 1312, 1419
HpySE526I ACGT 2 cut(s) 668, 845
Hsp92II CATG 4 cut(s) 521, 567, 1190, 1391
Kzo9I GATC 4 cut(s) 125, 574, 726, 1105
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 4 cut(s) 409, 607, 763, 1170
LweI GCATC 2 cut(s) 784, 1374
MaeI CTAG 2 cut(s) 878, 1239
MaeII ACGT 2 cut(s) 668, 845
MaeIII GTNAC 2 cut(s) 643, 975
MalI GATC 4 cut(s) 127, 576, 728, 1107
MboI GATC 4 cut(s) 125, 574, 726, 1105
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 125
MluCI AATT 3 cut(s) 534, 654, 867
MlyI GAGTC 3 cut(s) 7, 1100, 1132
Mph1103I ATGCAT 1 cut(s) 1389
MroXI GAANNNNTTC 2 cut(s) 737, 1203
MseI TTAA 5 cut(s) 26, 258, 861, 1235, 1359
MspA1I CMGCKG 1 cut(s) 1183
MspI CCGG 1 cut(s) 1085
MspR9I CCNGG 2 cut(s) 123, 1209
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 2 cut(s) 123, 1209
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeI CATATG 1 cut(s) 613
NdeII GATC 4 cut(s) 125, 574, 726, 1105
NlaIII CATG 4 cut(s) 521, 567, 1190, 1391
NlaIV GGNNCC 4 cut(s) 127, 323, 515, 825
NmuCI GTSAC 1 cut(s) 975
NsiI ATGCAT 1 cut(s) 1389
PctI GAATGC 1 cut(s) 531
PdmI GAANNNNTTC 2 cut(s) 737, 1203
PfeI GAWTC 4 cut(s) 272, 551, 1116, 1177
PflFI GACNNNGTC 2 cut(s) 38, 1429
PfoI TCCNGGA 1 cut(s) 1207
PkrI GCNGC 4 cut(s) 424, 597, 753, 1185
PleI GAGTC 3 cut(s) 7, 1099, 1132
PpsI GAGTC 3 cut(s) 7, 1099, 1132
Psp1406I AACGTT 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 121, 1207
PspGI CCWGG 2 cut(s) 121, 1207
PspN4I GGNNCC 4 cut(s) 127, 323, 515, 825
PspPI GGNCC 1 cut(s) 677
PstI CTGCAG 2 cut(s) 597, 1165
PsuI RGATCY 1 cut(s) 125
PsyI GACNNNGTC 2 cut(s) 38, 1429
PvuII CAGCTG 1 cut(s) 1183
RsaI GTAC 2 cut(s) 22, 1015
RsaNI GTAC 2 cut(s) 21, 1014
SaqAI TTAA 5 cut(s) 26, 258, 861, 1235, 1359
SatI GCNGC 4 cut(s) 423, 596, 752, 1184
Sau3AI GATC 4 cut(s) 125, 574, 726, 1105
Sau96I GGNCC 1 cut(s) 677
SchI GAGTC 3 cut(s) 7, 1100, 1132
ScrFI CCNGG 2 cut(s) 123, 1209
SfaNI GCATC 2 cut(s) 784, 1374
SfcI CTRYAG 2 cut(s) 593, 1161
SinI GGWCC 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 1317
SmoI CTYRAG 1 cut(s) 1317
Sse9I AATT 3 cut(s) 534, 654, 867
SsiI CCGC 4 cut(s) 6, 58, 489, 701
SspMI CTAG 2 cut(s) 878, 1239
StyD4I CCNGG 2 cut(s) 121, 1207
TaaI ACNGT 3 cut(s) 67, 95, 1231
TaiI ACGT 2 cut(s) 671, 848
TaqI TCGA 9 cut(s) 16, 90, 301, 558, 581, 731, 899, 1197, 1452
TaqII GACCGA 1 cut(s) 255
TasI AATT 3 cut(s) 534, 654, 867
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 4 cut(s) 272, 551, 1116, 1177
Tru1I TTAA 5 cut(s) 26, 258, 861, 1235, 1359
Tru9I TTAA 5 cut(s) 26, 258, 861, 1235, 1359
TscAI CASTG 2 cut(s) 1078, 1372
TseFI GTSAC 1 cut(s) 975
TseI GCWGC 4 cut(s) 422, 595, 751, 1183
Tsp45I GTSAC 1 cut(s) 975
TspDTI ATGAA 6 cut(s) 171, 176, 209, 630, 780, 1230
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 2 cut(s) 1078, 1372
Tth111I GACNNNGTC 2 cut(s) 38, 1429
VpaK11BI GGWCC 1 cut(s) 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XmiI GTMKAC 2 cut(s) 1081, 1433
XmnI GAANNNNTTC 2 cut(s) 737, 1203
XspI CTAG 2 cut(s) 878, 1239
Zsp2I ATGCAT 1 cut(s) 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.