AT2G26530

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015304
Physical Location & Seq
Reverse (-)
11282663 .. 11284272
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26530.2

Sequence Viewer

Length: 954 bp
ATGGAAGTGATGAGCTTGACTGCCCCATCTTCACCGAGACAATTATCTGGCTGCTTCTTAAGCGCACCAACAAGCCCTAGAAGATTCAATGAGTTTTATAGAGAGTTTGAAGAGGCCGCAACAAGAAACTTCTCCGACCGTCTTACGGTTCCTTTTGATTGGGAAGAGACTCCAGGCACGCCTAGGAAGATCACCAACGATGATGATGATGATATTGATTTCGCTTTCGAGATTGGTGGGAAACTCGAAACGACGTCGCTTTTTGCTGAAGAGCTTTTTGATGGAGGCAAAATCAAACCCTTGAAGCCTCCTCCGTATTTACAATTAGACCATCATCATCAGCCTCAGATTTTATCTCCAAGGTCTCCAAGATCACCTATTGCTCATGGTAAGAACATTATCCGCAAAGCTTTTTCCCCAAGAAAGAAACCGGATAACGTGGATCCTTTTGAGGTCGCCATGGATAAAGCTAGGAATGGCTTAGGAGAGGAAAGAGGGAGAGGGAGACGTCAAAACTCTGGTCGTAGAGTTGCTCGATCACTTTCGCCTTTTCGGGTTTCGGCTTATCCATGGGAAGAACAAGAACAAGAACAAGAACAAGAACAGAGAGATGTACAAGAACAGAGGAAAGGGACCTTGTCTTCTATTCCATCTACATCTTCATCAGCTTGCGTGTCTTGCAAGTCATCTTCCTCAAAGAAATGGAGACTAAAGGACTTTCTTCTGTTCCGAAGTGCATCCGAAGGAAGAGCAAGGCACAACAAAGATTCGGTAAAGACGTTTACAAGTTTGTTTAGGAAGCAAGAAGACACCAAGAACTCGAGTTCACGAGGAAGAGGGTCATCATCGGTCTCCGCCCATGAATTCCATTACATGTCTAAGAAAGCAGAAACGAAAGATTTGAAGAAGAAGACTTTCTTGCCTTACATGCAAATAGGACGATTCGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

317

Amino Acids

36.2

Weight (kDa)

9.6

Isoelectric Point (pI)

68.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 89 - 281 5.8e-42 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26530 AT2G26530
fragaria_vesca FvH4_2g34940
malus_domestica MD08G1106900.v1.1 MD15G1087600.v1.1
prunus_persica Prupe.1G441300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0307061
rosa_laevigata RLG00000010737
rosa_multiflora Rmu_sc0005634.1_g000005
rosa_roxburghii Rroxscaffold_7G00161190
rosa_rugosa Rorug06G0355600
rosa_samantha Rh6AG467100 Rh6BG433400 Rh6CG482600 Rh6DG468900
rosa_wichuraiana Rw6G040720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 257, 511
AciI CCGC 3 cut(s) 117, 403, 855
AclWI GGATC 2 cut(s) 437, 450
AcsI RAATTY 1 cut(s) 863
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 2 cut(s) 254, 508
AfaI GTAC 1 cut(s) 615
AfiI CCNNNNNNNGG 1 cut(s) 145
AflII CTTAAG 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 4 cut(s) 88, 110, 304, 904
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 5 cut(s) 15, 274, 410, 470, 668
AluI AGCT 5 cut(s) 15, 274, 410, 470, 668
Alw26I GTCTC 6 cut(s) 31, 161, 369, 499, 700, 856
AlwI GGATC 2 cut(s) 437, 450
Ama87I CYCGRG 1 cut(s) 820
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 863
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
Asp700I GAANNNNTTC 1 cut(s) 914
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 633
AsuHPI GGTGA 3 cut(s) 24, 184, 366
AvaI CYCGRG 1 cut(s) 820
AvaII GGWCC 1 cut(s) 633
AvrII CCTAGG 1 cut(s) 182
BamHI GGATCC 1 cut(s) 442
BauI CACGAG 1 cut(s) 828
BbsI GAAGAC 3 cut(s) 633, 813, 917
BbvI GCAGC 1 cut(s) 38
BccI CCATC 4 cut(s) 34, 275, 339, 658
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 6 cut(s) 31, 161, 369, 499, 700, 856
BfaI CTAG 3 cut(s) 78, 183, 471
BfrI CTTAAG 1 cut(s) 58
BisI GCNGC 2 cut(s) 52, 117
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 2 cut(s) 53, 118
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 633
BmeT110I CYCGRG 1 cut(s) 820
BmgT120I GGNCC 1 cut(s) 633
BmiI GGNNCC 3 cut(s) 150, 444, 634
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 746
BpiI GAAGAC 3 cut(s) 633, 813, 917
BpmI CTGGAG 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 481
BsaHI GRCGYC 2 cut(s) 254, 508
BsaI GGTCTC 2 cut(s) 369, 856
BsaJI CCNNGG 4 cut(s) 182, 359, 459, 569
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 4 cut(s) 182, 359, 459, 569
BseGI GGATG 1 cut(s) 737
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 820
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 6 cut(s) 31, 161, 369, 499, 700, 856
BsmBI CGTCTC 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 2 cut(s) 369, 856
BsoBI CYCGRG 1 cut(s) 820
Bsp1407I TGTACA 1 cut(s) 613
Bsp143I GATC 4 cut(s) 189, 371, 442, 536
Bsp19I CCATGG 2 cut(s) 459, 569
BspACI CCGC 3 cut(s) 117, 403, 855
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 3 cut(s) 150, 444, 634
BspPI GGATC 2 cut(s) 437, 450
BspQI GCTCTTC 2 cut(s) 264, 742
BspTI CTTAAG 1 cut(s) 58
BspTNI GGTCTC 2 cut(s) 369, 856
BsrGI TGTACA 1 cut(s) 613
BssECI CCNNGG 4 cut(s) 182, 359, 459, 569
BssMI GATC 4 cut(s) 189, 371, 442, 536
BssNI GRCGYC 2 cut(s) 254, 508
BssSI CACGAG 1 cut(s) 828
BssT1I CCWWGG 4 cut(s) 182, 359, 459, 569
Bst2BI CACGAG 1 cut(s) 828
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 140, 148
Bst6I CTCTTC 5 cut(s) 105, 159, 264, 742, 829
BstACI GRCGYC 2 cut(s) 254, 508
BstAFI CTTAAG 1 cut(s) 58
BstAUI TGTACA 1 cut(s) 613
BstC8I GCNNGC 2 cut(s) 179, 670
BstDEI CTNAG 3 cut(s) 345, 481, 879
BstDSI CCRYGG 2 cut(s) 459, 569
BstF5I GGATG 1 cut(s) 737
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 4 cut(s) 192, 374, 445, 539
BstMAI GTCTC 6 cut(s) 31, 161, 369, 499, 700, 856
BstMBI GATC 4 cut(s) 189, 371, 442, 536
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 3 cut(s) 60, 678, 928
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 2 cut(s) 877, 931
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 3 cut(s) 633, 813, 917
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 1 cut(s) 116
BtgI CCRYGG 2 cut(s) 459, 569
BtsCI GGATG 1 cut(s) 737
Cac8I GCNNGC 2 cut(s) 179, 670
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 633
Csp6I GTAC 1 cut(s) 614
CviAII CATG 6 cut(s) 386, 460, 570, 860, 874, 928
CviQI GTAC 1 cut(s) 614
DdeI CTNAG 3 cut(s) 345, 481, 879
DpnI GATC 4 cut(s) 191, 373, 444, 538
DpnII GATC 4 cut(s) 189, 371, 442, 536
Eam1104I CTCTTC 5 cut(s) 105, 159, 264, 742, 829
EarI CTCTTC 5 cut(s) 105, 159, 264, 742, 829
EciI GGCGGA 1 cut(s) 844
Eco130I CCWWGG 4 cut(s) 182, 359, 459, 569
Eco31I GGTCTC 2 cut(s) 369, 856
Eco47I GGWCC 1 cut(s) 633
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 820
EcoO109I RGGNCCY 1 cut(s) 633
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 4 cut(s) 182, 359, 459, 569
ErhI CCWWGG 4 cut(s) 182, 359, 459, 569
Esp3I CGTCTC 1 cut(s) 499
FaeI CATG 6 cut(s) 389, 463, 573, 863, 877, 931
FaiI YATR 7 cut(s) 99, 387, 461, 571, 861, 875, 929
FalI AAGNNNNNCTT 2 cut(s) 902, 934
FaqI GGGAC 1 cut(s) 646
FatI CATG 6 cut(s) 385, 459, 569, 859, 873, 927
Fnu4HI GCNGC 2 cut(s) 52, 117
FokI GGATG 1 cut(s) 724
Fsp4HI GCNGC 2 cut(s) 52, 117
FspBI CTAG 3 cut(s) 78, 183, 471
GlaI GCGC 1 cut(s) 64
GluI GCNGC 2 cut(s) 52, 117
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 431
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 2 cut(s) 254, 508
Hin1II CATG 6 cut(s) 389, 463, 573, 863, 877, 931
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 4 cut(s) 84, 169, 767, 942
HpaII CCGG 1 cut(s) 431
HphI GGTGA 3 cut(s) 24, 184, 366
Hpy166II GTNNAC 2 cut(s) 783, 827
Hpy188I TCNGA 4 cut(s) 136, 348, 731, 742
Hpy188III TCNNGA 2 cut(s) 229, 828
Hpy8I GTNNAC 2 cut(s) 783, 827
Hpy99I CGWCG 2 cut(s) 256, 259
HpyAV CCTTC 1 cut(s) 737
HpyCH4III ACNGT 2 cut(s) 140, 148
HpyCH4IV ACGT 4 cut(s) 254, 438, 508, 779
HpyCH4V TGCA 3 cut(s) 681, 737, 931
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 678, 928
HpyF3I CTNAG 3 cut(s) 345, 481, 879
HpySE526I ACGT 4 cut(s) 254, 438, 508, 779
Hsp92I GRCGYC 2 cut(s) 254, 508
Hsp92II CATG 6 cut(s) 389, 463, 573, 863, 877, 931
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 4 cut(s) 189, 371, 442, 536
LguI GCTCTTC 2 cut(s) 264, 742
LpnPI CCDG 5 cut(s) 33, 159, 186, 444, 504
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 1 cut(s) 746
MaeI CTAG 3 cut(s) 78, 183, 471
MaeII ACGT 4 cut(s) 254, 438, 508, 779
MalI GATC 4 cut(s) 191, 373, 444, 538
MboI GATC 4 cut(s) 189, 371, 442, 536
MflI RGATCY 1 cut(s) 442
MluCI AATT 3 cut(s) 41, 323, 863
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 914
MseI TTAA 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 58
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 60, 678, 928
NcoI CCATGG 2 cut(s) 459, 569
NdeII GATC 4 cut(s) 189, 371, 442, 536
NlaIII CATG 6 cut(s) 389, 463, 573, 863, 877, 931
NlaIV GGNNCC 3 cut(s) 150, 444, 634
NspI RCATGY 2 cut(s) 877, 931
PaeR7I CTCGAG 1 cut(s) 820
PciI ACATGT 1 cut(s) 873
PciSI GCTCTTC 2 cut(s) 264, 742
PcsI WCGNNNNNNNCGW 1 cut(s) 776
PdmI GAANNNNTTC 1 cut(s) 914
PfeI GAWTC 3 cut(s) 84, 767, 942
PflFI GACNNNGTC 1 cut(s) 637
PkrI GCNGC 2 cut(s) 53, 118
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PpuMI RGGWCCY 1 cut(s) 633
PscI ACATGT 1 cut(s) 873
Psp5II RGGWCCY 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 150, 444, 634
PspPI GGNCC 1 cut(s) 633
PspPPI RGGWCCY 1 cut(s) 633
PspXI VCTCGAGB 1 cut(s) 820
PsuI RGATCY 1 cut(s) 442
PsyI GACNNNGTC 1 cut(s) 637
RsaI GTAC 1 cut(s) 615
RsaNI GTAC 1 cut(s) 614
SapI GCTCTTC 2 cut(s) 264, 742
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 2 cut(s) 52, 117
Sau3AI GATC 4 cut(s) 189, 371, 442, 536
Sau96I GGNCC 1 cut(s) 633
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 174
SfaNI GCATC 1 cut(s) 746
Sfr274I CTCGAG 1 cut(s) 820
SinI GGWCC 1 cut(s) 633
SlaI CTCGAG 1 cut(s) 820
SmlI CTYRAG 2 cut(s) 58, 820
SmoI CTYRAG 2 cut(s) 58, 820
Sse9I AATT 3 cut(s) 41, 323, 863
SsiI CCGC 3 cut(s) 117, 403, 855
SspMI CTAG 3 cut(s) 78, 183, 471
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 4 cut(s) 182, 359, 459, 569
TaaI ACNGT 2 cut(s) 140, 148
TaiI ACGT 4 cut(s) 257, 441, 511, 782
TaqI TCGA 4 cut(s) 228, 246, 535, 821
TaqII GACCGA 1 cut(s) 838
TasI AATT 3 cut(s) 41, 323, 863
TatI WGTACW 1 cut(s) 613
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 3 cut(s) 84, 767, 942
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 651, 876
TspGWI ACGGA 1 cut(s) 303
Tth111I GACNNNGTC 1 cut(s) 637
Vha464I CTTAAG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 633
XapI RAATTY 1 cut(s) 863
XceI RCATGY 2 cut(s) 877, 931
XhoI CTCGAG 1 cut(s) 820
XmaJI CCTAGG 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 914
XspI CTAG 3 cut(s) 78, 183, 471
ZraI GACGTC 2 cut(s) 255, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.