Rh6CG482600

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015304
Physical Location & Seq
Reverse (-)
64900681 .. 64902440
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG482600.1

Sequence Viewer

Length: 1053 bp
ATGGAGGTAGCTATACCAAGCAGACCCACCTTGGATTTCGACTTCAACAGCGCTCGATCTTCGCCTTGCATTACTACTCCTTCAACTCCGAGACGCTTCGGCGACTACAGCTTCTTGAGTGCACCAACCAGTCCATCTCGAATGTCCGAGTTTTACAGAGAATTTGATGAGTTCTCCACAGTCAGTAGTAACTGGGAAGAAGAAGATGAGCCTGAACTTGCAGCACCACCCAAATCACCAAAACCAGACGACTTTGCGTTTGATGTTAGCGAGGAGGTAGACAGAGTTTCTCTCTCAGCTGAAGAGCTTTTCGATGGCGGCGTTATAAGACCTTTAAAGGCTCCTCCACCTCCTCAATTCTCAACAAAGAAGATCAATATTCGTCAAGCTCTTTCGCCCAGAAGGAGAAAAGATAGAGATTCATATCCATTCGCGGCGAACAATTCGACCGGAATGGAAACTCCCCAGAAGAGATCAGCTGTTTCTTCACAGCAACAAAGAGGAAGAGAAAGAGCTCCTCCAACCGTGTCTTCTTCAAGCCGCAGATCTTCAAGATCACTATCTCCTTTGAGGGTTTCAGAGTTTAACTGGGCACAAGAAGAAGAAGAGCTAAAACGACAAGAAGCAGCAGCAGCAGCACAGAACAAGCAATTAGCTACAAAGGGTTCATTAATTTCATCTGCTACTGCTGCTTTGAATAGTTGCAAGGCTTCAAGAAAATGGAGGCTGAAAGATTTTCTGTTGTTTCGGAGCGCATCAGAGGGCAGAGCAACAGATAAAGATCCATTCAGAAAGTTCTGGAATCAGAAAAACGAGCATGCGAAGACCTCTAGCTCCAGCTTCAGATCCATAGACAGCCCGGCCTCTGTTTCTAGTTCAAGAAGAAGAGGACCTTCAGCACATGAGTTGCATTACACTGTGAACAAGGCAGTGTCCGATGATATGAAGAAGAAGACCTTCTTGCCTTACAAACAGGGCATTCTGGGAAGATTGGCTTTCAATCCTGCTGTTCATTCTCTGGCCAATGGATTTGGGTCTCTTTCGAGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

350

Amino Acids

39.04

Weight (kDa)

9.78

Isoelectric Point (pI)

80.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 100 - 322 2.1e-40 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26530 AT2G26530
fragaria_vesca FvH4_2g34940
malus_domestica MD08G1106900.v1.1 MD15G1087600.v1.1
prunus_persica Prupe.1G441300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0307061
rosa_laevigata RLG00000010737
rosa_multiflora Rmu_sc0005634.1_g000005
rosa_roxburghii Rroxscaffold_7G00161190
rosa_rugosa Rorug06G0355600
rosa_samantha Rh6AG467100 Rh6BG433400 Rh6CG482600 Rh6DG468900
rosa_wichuraiana Rw6G040720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AccI GTMKAC 1 cut(s) 279
AccII CGCG 1 cut(s) 434
AciI CCGC 3 cut(s) 318, 434, 541
AclWI GGATC 2 cut(s) 776, 840
AcoI YGGCCR 1 cut(s) 1020
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 3 cut(s) 321, 826, 879
AfeI AGCGCT 1 cut(s) 52
AgsI TTSAA 8 cut(s) 46, 84, 537, 552, 697, 714, 879, 1000
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
Alw21I GWGCWC 2 cut(s) 124, 517
Alw26I GTCTC 2 cut(s) 85, 1041
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 2 cut(s) 776, 840
Aor51HI AGCGCT 1 cut(s) 52
AoxI GGCC 2 cut(s) 861, 1020
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 6 cut(s) 221, 626, 629, 632, 635, 689
ApoI RAATTY 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 671
Asp700I GAANNNNTTC 1 cut(s) 956
AspLEI GCGC 2 cut(s) 53, 755
AspS9I GGNCC 2 cut(s) 890, 1047
AsuC2I CCSGG 1 cut(s) 860
AsuHPI GGTGA 1 cut(s) 228
AvaII GGWCC 2 cut(s) 890, 1047
BaeGI GKGCMC 2 cut(s) 124, 595
BalI TGGCCA 1 cut(s) 1022
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 3 cut(s) 522, 830, 959
Bbv12I GWGCWC 2 cut(s) 124, 517
BbvI GCAGC 6 cut(s) 233, 638, 641, 644, 647, 676
BccI CCATC 2 cut(s) 142, 308
BcnI CCSGG 1 cut(s) 860
BcoDI GTCTC 2 cut(s) 85, 1041
BfaI CTAG 2 cut(s) 831, 873
BfmI CTRYAG 1 cut(s) 106
BfoI RGCGCY 1 cut(s) 54
BglII AGATCT 1 cut(s) 545
BisI GCNGC 9 cut(s) 222, 319, 435, 541, 627, 630, 633, 636, 690
BlsI GCNGC 9 cut(s) 223, 320, 436, 542, 628, 631, 634, 637, 691
Bme1390I CCNGG 1 cut(s) 860
Bme18I GGWCC 2 cut(s) 890, 1047
BmgT120I GGNCC 2 cut(s) 890, 1047
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 860
BmrI ACTGGG 2 cut(s) 202, 598
BmsI GCATC 1 cut(s) 764
BmuI ACTGGG 2 cut(s) 202, 598
BpiI GAAGAC 3 cut(s) 522, 830, 959
BplI GAGNNNNNCTC 2 cut(s) 276, 308
BpmI CTGGAG 1 cut(s) 820
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 860
BsaBI GATNNNNATC 3 cut(s) 423, 559, 780
BsaI GGTCTC 1 cut(s) 1041
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 449
Bse1I ACTGG 3 cut(s) 129, 197, 593
Bse8I GATNNNNATC 3 cut(s) 423, 559, 780
BseDI CCNNGG 1 cut(s) 30
BseJI GATNNNNATC 3 cut(s) 423, 559, 780
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 3 cut(s) 129, 197, 593
BseRI GAGGAG 4 cut(s) 287, 333, 342, 507
BseSI GKGCMC 2 cut(s) 124, 595
BseXI GCAGC 6 cut(s) 233, 638, 641, 644, 647, 676
Bsh1236I CGCG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 2 cut(s) 863, 1022
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 124, 517
BsiSI CCGG 2 cut(s) 450, 860
BsmAI GTCTC 2 cut(s) 85, 1041
BsmBI CGTCTC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 978
BsnI GGCC 2 cut(s) 863, 1022
Bso31I GGTCTC 1 cut(s) 1041
Bsp1286I GDGCHC 3 cut(s) 124, 517, 595
Bsp143I GATC 7 cut(s) 56, 372, 473, 545, 554, 781, 845
BspACI CCGC 3 cut(s) 318, 434, 541
BspANI GGCC 2 cut(s) 863, 1022
BspCNI CTCAG 1 cut(s) 308
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 2 cut(s) 776, 840
BspQI GCTCTTC 2 cut(s) 297, 600
BspTNI GGTCTC 1 cut(s) 1041
BsrI ACTGG 3 cut(s) 129, 197, 593
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 7 cut(s) 56, 372, 473, 545, 554, 781, 845
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 181, 526, 919
Bst6I CTCTTC 5 cut(s) 297, 464, 499, 600, 880
BstC8I GCNNGC 1 cut(s) 819
BstDEI CTNAG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 434
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 755
BstKTI GATC 7 cut(s) 59, 375, 476, 548, 557, 784, 848
BstMAI GTCTC 2 cut(s) 85, 1041
BstMBI GATC 7 cut(s) 56, 372, 473, 545, 554, 781, 845
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 4 cut(s) 108, 632, 635, 689
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 858
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 2 cut(s) 124, 595
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 6 cut(s) 233, 638, 641, 644, 647, 676
BstV2I GAAGAC 3 cut(s) 522, 830, 959
BstX2I RGATCY 3 cut(s) 545, 781, 845
BstYI RGATCY 3 cut(s) 545, 781, 845
BsuRI GGCC 2 cut(s) 863, 1022
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 2 cut(s) 915, 936
Cac8I GCNNGC 1 cut(s) 819
CfoI GCGC 2 cut(s) 53, 755
Cfr13I GGNCC 2 cut(s) 890, 1047
CseI GACGC 1 cut(s) 102
CviAII CATG 2 cut(s) 818, 902
DdeI CTNAG 1 cut(s) 295
DpnI GATC 7 cut(s) 58, 374, 475, 547, 556, 783, 847
DpnII GATC 7 cut(s) 56, 372, 473, 545, 554, 781, 845
DraI TTTAAA 1 cut(s) 336
EaeI YGGCCR 1 cut(s) 1020
Eam1104I CTCTTC 5 cut(s) 297, 464, 499, 600, 880
EarI CTCTTC 5 cut(s) 297, 464, 499, 600, 880
Ecl136II GAGCTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 517
Eco31I GGTCTC 1 cut(s) 1041
Eco47I GGWCC 2 cut(s) 890, 1047
Eco47III AGCGCT 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 3 cut(s) 321, 826, 879
EcoICRI GAGCTC 1 cut(s) 515
EcoO109I RGGNCCY 2 cut(s) 890, 1047
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 2 cut(s) 821, 905
FaiI YATR 7 cut(s) 14, 326, 424, 819, 851, 903, 944
FalI AAGNNNNNCTT 8 cut(s) 877, 909, 941, 973, 944, 976, 979, 1011
FatI CATG 2 cut(s) 817, 901
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 9 cut(s) 222, 319, 435, 541, 627, 630, 633, 636, 690
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 9 cut(s) 222, 319, 435, 541, 627, 630, 633, 636, 690
FspBI CTAG 2 cut(s) 831, 873
GlaI GCGC 2 cut(s) 52, 754
GluI GCNGC 9 cut(s) 222, 319, 435, 541, 627, 630, 633, 636, 690
GsuI CTGGAG 1 cut(s) 820
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 2 cut(s) 863, 1022
HapII CCGG 2 cut(s) 450, 860
HgaI GACGC 1 cut(s) 102
HhaI GCGC 2 cut(s) 53, 755
Hin1II CATG 2 cut(s) 821, 905
Hin6I GCGC 2 cut(s) 51, 753
HinP1I GCGC 2 cut(s) 51, 753
HinfI GANTC 2 cut(s) 419, 802
HpaII CCGG 2 cut(s) 450, 860
HphI GGTGA 1 cut(s) 228
Hpy166II GTNNAC 3 cut(s) 122, 280, 922
Hpy188I TCNGA 9 cut(s) 90, 148, 580, 750, 760, 791, 807, 845, 937
Hpy188III TCNNGA 7 cut(s) 115, 138, 552, 714, 799, 879, 1050
Hpy8I GTNNAC 3 cut(s) 122, 280, 922
HpyAV CCTTC 4 cut(s) 90, 396, 903, 967
HpyCH4III ACNGT 3 cut(s) 181, 526, 919
HpyCH4V TGCA 5 cut(s) 69, 122, 221, 705, 910
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 632, 635, 689
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 2 cut(s) 821, 905
HspAI GCGC 2 cut(s) 51, 753
Kzo9I GATC 7 cut(s) 56, 372, 473, 545, 554, 781, 845
LguI GCTCTTC 2 cut(s) 297, 600
LmnI GCTCC 4 cut(s) 346, 520, 750, 839
Lsp1109I GCAGC 6 cut(s) 233, 638, 641, 644, 647, 676
LweI GCATC 1 cut(s) 764
MaeI CTAG 2 cut(s) 831, 873
MaeIII GTNAC 1 cut(s) 188
MalI GATC 7 cut(s) 58, 374, 475, 547, 556, 783, 847
MboI GATC 7 cut(s) 56, 372, 473, 545, 554, 781, 845
MflI RGATCY 3 cut(s) 545, 781, 845
MhlI GDGCHC 3 cut(s) 124, 517, 595
MlsI TGGCCA 1 cut(s) 1022
MluCI AATT 5 cut(s) 161, 356, 442, 650, 672
MluNI TGGCCA 1 cut(s) 1022
MmeI TCCRAC 1 cut(s) 545
Mox20I TGGCCA 1 cut(s) 1022
MroXI GAANNNNTTC 1 cut(s) 956
MscI TGGCCA 1 cut(s) 1022
MseI TTAA 3 cut(s) 335, 585, 671
Msp20I TGGCCA 1 cut(s) 1022
MspA1I CMGCKG 2 cut(s) 299, 479
MspI CCGG 2 cut(s) 450, 860
MspR9I CCNGG 1 cut(s) 860
Mva1269I GAATGC 1 cut(s) 978
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 108, 632, 635, 689
NciI CCSGG 1 cut(s) 860
NdeII GATC 7 cut(s) 56, 372, 473, 545, 554, 781, 845
NlaIII CATG 2 cut(s) 821, 905
NlaIV GGNNCC 1 cut(s) 342
NspI RCATGY 1 cut(s) 821
PaeI GCATGC 1 cut(s) 821
PciSI GCTCTTC 2 cut(s) 297, 600
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PctI GAATGC 1 cut(s) 978
PdmI GAANNNNTTC 1 cut(s) 956
PfeI GAWTC 2 cut(s) 419, 802
PkrI GCNGC 9 cut(s) 223, 320, 436, 542, 628, 631, 634, 637, 691
PpuMI RGGWCCY 2 cut(s) 890, 1047
PshBI ATTAAT 1 cut(s) 671
PsiI TTATAA 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 517
Psp5II RGGWCCY 2 cut(s) 890, 1047
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 2 cut(s) 890, 1047
PspPPI RGGWCCY 2 cut(s) 890, 1047
PsuI RGATCY 3 cut(s) 545, 781, 845
PvuII CAGCTG 2 cut(s) 299, 479
SacI GAGCTC 1 cut(s) 517
SapI GCTCTTC 2 cut(s) 297, 600
SaqAI TTAA 3 cut(s) 335, 585, 671
SatI GCNGC 9 cut(s) 222, 319, 435, 541, 627, 630, 633, 636, 690
Sau3AI GATC 7 cut(s) 56, 372, 473, 545, 554, 781, 845
Sau96I GGNCC 2 cut(s) 890, 1047
ScrFI CCNGG 1 cut(s) 860
SduI GDGCHC 3 cut(s) 124, 517, 595
SfaNI GCATC 1 cut(s) 764
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 2 cut(s) 890, 1047
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SphI GCATGC 1 cut(s) 821
Sse9I AATT 5 cut(s) 161, 356, 442, 650, 672
SsiI CCGC 3 cut(s) 318, 434, 541
SspI AATATT 1 cut(s) 379
SspMI CTAG 2 cut(s) 831, 873
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 858
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 181, 526, 919
TaqI TCGA 6 cut(s) 39, 55, 139, 312, 446, 1043
TasI AATT 5 cut(s) 161, 356, 442, 650, 672
TauI GCSGC 3 cut(s) 321, 437, 543
TfiI GAWTC 2 cut(s) 419, 802
Tru1I TTAA 3 cut(s) 335, 585, 671
Tru9I TTAA 3 cut(s) 335, 585, 671
TscAI CASTG 2 cut(s) 922, 936
TseI GCWGC 6 cut(s) 221, 626, 629, 632, 635, 689
TspDTI ATGAA 5 cut(s) 411, 657, 666, 959, 1001
TspRI CASTG 2 cut(s) 922, 936
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 890, 1047
VspI ATTAAT 1 cut(s) 671
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 956
XspI CTAG 2 cut(s) 831, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.