Rroxscaffold_7G00161190

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015304
Physical Location & Seq
Forward (+)
4001174 .. 4002220
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161190.1

Sequence Viewer

Length: 1047 bp
ATGGAGGTAGCTATACCAAGCAGACCCACCTTGGATTTCGACTTCAACAGCGCTCGATCTTCGCCTTGCATTACTACTCCTTCAACTCCGAGACGCTTCGGCGACTACAGCTTCTTGAGTGCACCAACCAGTCCATCTCGAATGTCCGAGTTTTACAGAGAATTTGATGAATTCTCCACAGTCAGTAGTAACTGGGAAGAAGAAGATGAGCCTGAACTTGCAGCACCACCCAAATCACCAAAACCAGACGACTTTGCGTTTGATGTTAGCGAGGAGGTAGACAGAGTTTCTCTCTCAGCTGAAGAGCTTTTCGATGGCGGCGTTATAAGACCTTTAAAGGCTCCTCCACCTCCTCAATTCTCAACAAAGAAGATCAATATTCGTCAAGCTCTTTCGCCCAGAAGGAGAAAAGATAGAGATTCGTATCCATTCGAGGCTAACAATACGACCGGAATGGAAACTTCCCAGAAGAGATCAGTTGTTTCTTCACAGCACCAAAGAGGAAGAGAAAGAGCTCCTCCAACCGTGTCTTCTTCAAGCCGCAGATCTTCAAGATCACTATCTCCTTTGAGGGTTTCAGAGTTTAACTGGGCACAAGAAGAAGAAGAGCTAAAACGACAAGCAGCAGCAGCACAGAACAAGCAATTAGCTACAAAGGGTTCATTAATTTCACCTGCTACTGCTGCTTTGAATAGTTGCAAGGCTTCAAGAAAATGGAGGCTGAAAGATTTTCTGTTGTTTCGGAGCGCATCAGAGGGCAGAGCAACAGATAAAGATCCATTCAGAAAGTTCTGGAATCAGAAAAACGAGCATGCGAAGACCGCTAGCTCCAGTTTCAGATCCATAGACAGCCCGGCCTCTGTTCCTAGTTCAAGAAGAAGAGGACCTTCAGCACATGAGTTGCATTACACTGTGAACAGGGCAGTGTCCGATGATATGAAGAAGAAGACCTTCTTGCCTTACAAACAGGGCATTCTAGGAAGATTGGCTTTCAATCCTGCTGTTCATTCTCTTGCCAATGGATTTGGGTCTCTTTCAAGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

348

Amino Acids

38.97

Weight (kDa)

9.8

Isoelectric Point (pI)

79.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 100 - 320 2.4e-40 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26530 AT2G26530
fragaria_vesca FvH4_2g34940
malus_domestica MD08G1106900.v1.1 MD15G1087600.v1.1
prunus_persica Prupe.1G441300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0307061
rosa_laevigata RLG00000010737
rosa_multiflora Rmu_sc0005634.1_g000005
rosa_roxburghii Rroxscaffold_7G00161190
rosa_rugosa Rorug06G0355600
rosa_samantha Rh6AG467100 Rh6BG433400 Rh6CG482600 Rh6DG468900
rosa_wichuraiana Rw6G040720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AarI CACCTGC 1 cut(s) 682
Acc36I ACCTGC 1 cut(s) 682
AccI GTMKAC 1 cut(s) 279
AciI CCGC 3 cut(s) 318, 541, 822
AclWI GGATC 2 cut(s) 770, 834
AcsI RAATTY 2 cut(s) 161, 170
AcuI CTGAAG 2 cut(s) 321, 873
AfeI AGCGCT 1 cut(s) 52
AgsI TTSAA 9 cut(s) 46, 84, 537, 552, 691, 708, 873, 994, 1038
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
AluBI AGCT 9 cut(s) 11, 111, 299, 307, 389, 515, 610, 650, 828
AluI AGCT 9 cut(s) 11, 111, 299, 307, 389, 515, 610, 650, 828
Alw21I GWGCWC 2 cut(s) 124, 517
Alw26I GTCTC 2 cut(s) 85, 1035
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 2 cut(s) 770, 834
Aor51HI AGCGCT 1 cut(s) 52
AoxI GGCC 1 cut(s) 855
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 5 cut(s) 221, 623, 626, 629, 683
ApoI RAATTY 2 cut(s) 161, 170
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 665
Asp700I GAANNNNTTC 1 cut(s) 950
AspLEI GCGC 2 cut(s) 53, 749
AspS9I GGNCC 2 cut(s) 884, 1041
AsuC2I CCSGG 1 cut(s) 854
AsuHPI GGTGA 2 cut(s) 228, 663
AsuNHI GCTAGC 1 cut(s) 824
AvaII GGWCC 2 cut(s) 884, 1041
BaeGI GKGCMC 2 cut(s) 124, 595
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 3 cut(s) 522, 824, 953
Bbv12I GWGCWC 2 cut(s) 124, 517
BbvI GCAGC 5 cut(s) 233, 635, 638, 641, 670
BccI CCATC 2 cut(s) 142, 308
BciVI GTATCC 1 cut(s) 435
BcnI CCSGG 1 cut(s) 854
BcoDI GTCTC 2 cut(s) 85, 1035
BfaI CTAG 3 cut(s) 825, 867, 977
BfmI CTRYAG 1 cut(s) 106
BfoI RGCGCY 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 682
BfuI GTATCC 1 cut(s) 435
BglII AGATCT 1 cut(s) 545
BisI GCNGC 7 cut(s) 222, 319, 541, 624, 627, 630, 684
BlsI GCNGC 7 cut(s) 223, 320, 542, 625, 628, 631, 685
Bme1390I CCNGG 1 cut(s) 854
Bme18I GGWCC 2 cut(s) 884, 1041
BmgT120I GGNCC 2 cut(s) 884, 1041
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 854
BmrI ACTGGG 2 cut(s) 202, 598
BmsI GCATC 1 cut(s) 758
BmtI GCTAGC 1 cut(s) 828
BmuI ACTGGG 2 cut(s) 202, 598
BpiI GAAGAC 3 cut(s) 522, 824, 953
BplI GAGNNNNNCTC 2 cut(s) 276, 308
BpmI CTGGAG 1 cut(s) 814
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 854
BsaBI GATNNNNATC 3 cut(s) 423, 559, 774
BsaI GGTCTC 1 cut(s) 1035
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 449
Bse1I ACTGG 4 cut(s) 129, 197, 593, 831
Bse8I GATNNNNATC 3 cut(s) 423, 559, 774
BseDI CCNNGG 1 cut(s) 30
BseJI GATNNNNATC 3 cut(s) 423, 559, 774
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 4 cut(s) 129, 197, 593, 831
BseRI GAGGAG 4 cut(s) 287, 333, 342, 507
BseSI GKGCMC 2 cut(s) 124, 595
BseXI GCAGC 5 cut(s) 233, 635, 638, 641, 670
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 1 cut(s) 857
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 124, 517
BsiSI CCGG 2 cut(s) 450, 854
BsmAI GTCTC 2 cut(s) 85, 1035
BsmBI CGTCTC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 972
BsnI GGCC 1 cut(s) 857
Bso31I GGTCTC 1 cut(s) 1035
Bsp1286I GDGCHC 3 cut(s) 124, 517, 595
Bsp143I GATC 7 cut(s) 56, 372, 473, 545, 554, 775, 839
BspACI CCGC 3 cut(s) 318, 541, 822
BspANI GGCC 1 cut(s) 857
BspCNI CTCAG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 342
BspMI ACCTGC 1 cut(s) 682
BspOI GCTAGC 1 cut(s) 828
BspPI GGATC 2 cut(s) 770, 834
BspQI GCTCTTC 2 cut(s) 297, 600
BspTNI GGTCTC 1 cut(s) 1035
BsrI ACTGG 4 cut(s) 129, 197, 593, 831
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 7 cut(s) 56, 372, 473, 545, 554, 775, 839
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 181, 526, 913
Bst6I CTCTTC 5 cut(s) 297, 464, 499, 600, 874
BstC8I GCNNGC 2 cut(s) 813, 826
BstDEI CTNAG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 749
BstKTI GATC 7 cut(s) 59, 375, 476, 548, 557, 778, 842
BstMAI GTCTC 2 cut(s) 85, 1035
BstMBI GATC 7 cut(s) 56, 372, 473, 545, 554, 775, 839
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 4 cut(s) 108, 629, 683, 821
BstNSI RCATGY 1 cut(s) 815
BstSCI CCNGG 1 cut(s) 852
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 2 cut(s) 124, 595
BstV1I GCAGC 5 cut(s) 233, 635, 638, 641, 670
BstV2I GAAGAC 3 cut(s) 522, 824, 953
BstX2I RGATCY 3 cut(s) 545, 775, 839
BstYI RGATCY 3 cut(s) 545, 775, 839
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 1 cut(s) 857
BtsI GCAGTG 1 cut(s) 930
BtsIMutI CAGTG 2 cut(s) 909, 930
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 2 cut(s) 813, 826
CfoI GCGC 2 cut(s) 53, 749
Cfr13I GGNCC 2 cut(s) 884, 1041
CseI GACGC 1 cut(s) 102
CviAII CATG 2 cut(s) 812, 896
DdeI CTNAG 1 cut(s) 295
DpnI GATC 7 cut(s) 58, 374, 475, 547, 556, 777, 841
DpnII GATC 7 cut(s) 56, 372, 473, 545, 554, 775, 839
DraI TTTAAA 1 cut(s) 336
Eam1104I CTCTTC 5 cut(s) 297, 464, 499, 600, 874
EarI CTCTTC 5 cut(s) 297, 464, 499, 600, 874
Ecl136II GAGCTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 517
Eco31I GGTCTC 1 cut(s) 1035
Eco47I GGWCC 2 cut(s) 884, 1041
Eco47III AGCGCT 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 2 cut(s) 321, 873
EcoICRI GAGCTC 1 cut(s) 515
EcoO109I RGGNCCY 2 cut(s) 884, 1041
EcoRI GAATTC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 2 cut(s) 815, 899
FaiI YATR 6 cut(s) 14, 326, 813, 845, 897, 938
FalI AAGNNNNNCTT 8 cut(s) 871, 903, 935, 967, 938, 970, 973, 1005
FatI CATG 2 cut(s) 811, 895
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 7 cut(s) 222, 319, 541, 624, 627, 630, 684
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 7 cut(s) 222, 319, 541, 624, 627, 630, 684
FspBI CTAG 3 cut(s) 825, 867, 977
GlaI GCGC 2 cut(s) 52, 748
GluI GCNGC 7 cut(s) 222, 319, 541, 624, 627, 630, 684
GsuI CTGGAG 1 cut(s) 814
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 857
HapII CCGG 2 cut(s) 450, 854
HgaI GACGC 1 cut(s) 102
HhaI GCGC 2 cut(s) 53, 749
Hin1II CATG 2 cut(s) 815, 899
Hin6I GCGC 2 cut(s) 51, 747
HinP1I GCGC 2 cut(s) 51, 747
HinfI GANTC 2 cut(s) 419, 796
HpaII CCGG 2 cut(s) 450, 854
HphI GGTGA 2 cut(s) 228, 663
Hpy166II GTNNAC 3 cut(s) 122, 280, 916
Hpy188I TCNGA 9 cut(s) 90, 148, 580, 744, 754, 785, 801, 839, 931
Hpy188III TCNNGA 7 cut(s) 115, 138, 552, 708, 793, 873, 1044
Hpy8I GTNNAC 3 cut(s) 122, 280, 916
HpyAV CCTTC 4 cut(s) 90, 396, 897, 961
HpyCH4III ACNGT 3 cut(s) 181, 526, 913
HpyCH4V TGCA 5 cut(s) 69, 122, 221, 699, 904
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 629, 683, 821
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 2 cut(s) 815, 899
HspAI GCGC 2 cut(s) 51, 747
Kzo9I GATC 7 cut(s) 56, 372, 473, 545, 554, 775, 839
LguI GCTCTTC 2 cut(s) 297, 600
LmnI GCTCC 4 cut(s) 346, 520, 744, 833
Lsp1109I GCAGC 5 cut(s) 233, 635, 638, 641, 670
LweI GCATC 1 cut(s) 758
MaeI CTAG 3 cut(s) 825, 867, 977
MaeIII GTNAC 1 cut(s) 188
MalI GATC 7 cut(s) 58, 374, 475, 547, 556, 777, 841
MboI GATC 7 cut(s) 56, 372, 473, 545, 554, 775, 839
MflI RGATCY 3 cut(s) 545, 775, 839
MhlI GDGCHC 3 cut(s) 124, 517, 595
MluCI AATT 5 cut(s) 161, 170, 356, 644, 666
MmeI TCCRAC 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 950
MseI TTAA 3 cut(s) 335, 585, 665
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 2 cut(s) 450, 854
MspR9I CCNGG 1 cut(s) 854
Mva1269I GAATGC 1 cut(s) 972
MwoI GCNNNNNNNGC 4 cut(s) 108, 629, 683, 821
NciI CCSGG 1 cut(s) 854
NdeII GATC 7 cut(s) 56, 372, 473, 545, 554, 775, 839
NheI GCTAGC 1 cut(s) 824
NlaIII CATG 2 cut(s) 815, 899
NlaIV GGNNCC 1 cut(s) 342
NspI RCATGY 1 cut(s) 815
PaeI GCATGC 1 cut(s) 815
PaqCI CACCTGC 1 cut(s) 682
PciSI GCTCTTC 2 cut(s) 297, 600
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PctI GAATGC 1 cut(s) 972
PdmI GAANNNNTTC 1 cut(s) 950
PfeI GAWTC 2 cut(s) 419, 796
PkrI GCNGC 7 cut(s) 223, 320, 542, 625, 628, 631, 685
PpuMI RGGWCCY 2 cut(s) 884, 1041
PshBI ATTAAT 1 cut(s) 665
PsiI TTATAA 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 517
Psp5II RGGWCCY 2 cut(s) 884, 1041
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 2 cut(s) 884, 1041
PspPPI RGGWCCY 2 cut(s) 884, 1041
PsuI RGATCY 3 cut(s) 545, 775, 839
PvuII CAGCTG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 517
SapI GCTCTTC 2 cut(s) 297, 600
SaqAI TTAA 3 cut(s) 335, 585, 665
SatI GCNGC 7 cut(s) 222, 319, 541, 624, 627, 630, 684
Sau3AI GATC 7 cut(s) 56, 372, 473, 545, 554, 775, 839
Sau96I GGNCC 2 cut(s) 884, 1041
ScrFI CCNGG 1 cut(s) 854
SduI GDGCHC 3 cut(s) 124, 517, 595
SfaNI GCATC 1 cut(s) 758
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 2 cut(s) 884, 1041
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SphI GCATGC 1 cut(s) 815
Sse9I AATT 5 cut(s) 161, 170, 356, 644, 666
SsiI CCGC 3 cut(s) 318, 541, 822
SspI AATATT 1 cut(s) 379
SspMI CTAG 3 cut(s) 825, 867, 977
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 852
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 181, 526, 913
TaqI TCGA 5 cut(s) 39, 55, 139, 312, 432
TasI AATT 5 cut(s) 161, 170, 356, 644, 666
TauI GCSGC 2 cut(s) 321, 543
TfiI GAWTC 2 cut(s) 419, 796
Tru1I TTAA 3 cut(s) 335, 585, 665
Tru9I TTAA 3 cut(s) 335, 585, 665
TscAI CASTG 2 cut(s) 916, 930
TseI GCWGC 5 cut(s) 221, 623, 626, 629, 683
TspDTI ATGAA 4 cut(s) 183, 651, 953, 995
TspRI CASTG 2 cut(s) 916, 930
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 884, 1041
VspI ATTAAT 1 cut(s) 665
XapI RAATTY 2 cut(s) 161, 170
XceI RCATGY 1 cut(s) 815
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 950
XspI CTAG 3 cut(s) 825, 867, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.