AT2G27290

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015262
Physical Location & Seq
Reverse (-)
11678305 .. 11679919
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27290.1

Sequence Viewer

Length: 606 bp
ATGGCGATGATGCTTCTGCAAATTCCTCCTTCGTCTTCCTTGTTGAACACCAGAAACCTTCAAATCCGATTCTTCCACTCTTCAGTTTCAGCTTCCTCGAAGAAATTCAGATGCAGAGCCGTCCGTGAGAAGGCGGAGGACATTGATAAGAACATTTCGCCGCCGTCTTCTTCTCCTCCTCCTCCTTCCGCCGAAGAAGTTACCAAGAAATATGGCCTTGAAGTTGGTCTATGGAAGATATTAAGCTCTAAGGATGATGAAGGAAGTGATGGAGACAATAAGAAGAAGAAATCAAAAACAGATGAGGCTAAAGAGTTACTTGCAAAGTATGGTGGTGCTTATCTCGCTACATCTATTACTCTTTCTCTCATTTCCTTCTCACTCTGCTATGTCCTTGTGACTTCCGGTGTTGATGTTCAAGCTCTTCTTCTAAAGGTTGGGATTTCGACGAATGAGACAGGAGAGAAAGTAGGAGCCTTTGCTTTGGCTTACGCAGCGCATAAAGCTGCATCTCCGATAAGGTTTCCGCCTACAGTGGCTTTGACTCCTATTGTAGCCAATTGGATTGGGAAGAAAGTGGACAAGGAGAAGGATGATGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

201

Amino Acids

21.76

Weight (kDa)

9.19

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 102 - 184 5.4e-27 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27290
fragaria_vesca FvH4_3g25980
malus_domestica MD03G1152600.v1.1 MD11G1172600.v1.1
prunus_persica Prupe.6G139600_v2.0.a1
pyrus_communis pycom11g14560
rosa_chinensis RchiOBHm_Chr5g0047271
rosa_laevigata RLG00000034485
rosa_multiflora Rmu_sc0003154.1_g000004
rosa_roxburghii Rroxscaffold_1G00034090
rosa_rugosa Rorug05G0235300
rosa_samantha Rh5AG314300 Rh5BG323000 Rh5CG350200 Rh5DG334000
rosa_wichuraiana Rw5G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 134, 161, 189, 527
AcsI RAATTY 2 cut(s) 21, 104
AcuI CTGAAG 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 4 cut(s) 46, 62, 221, 419
AluBI AGCT 4 cut(s) 92, 246, 422, 506
AluI AGCT 4 cut(s) 92, 246, 422, 506
Alw26I GTCTC 2 cut(s) 267, 449
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 494, 506
ApoI RAATTY 2 cut(s) 21, 104
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 499
BbsI GAAGAC 2 cut(s) 27, 159
BbvI GCAGC 2 cut(s) 493, 506
BccI CCATC 1 cut(s) 263
BceAI ACGGC 2 cut(s) 104, 148
BcoDI GTCTC 2 cut(s) 267, 449
BfmI CTRYAG 1 cut(s) 531
BisI GCNGC 3 cut(s) 161, 495, 507
BlsI GCNGC 3 cut(s) 162, 496, 508
BmiI GGNNCC 1 cut(s) 475
BmsI GCATC 2 cut(s) 101, 518
BpiI GAAGAC 2 cut(s) 27, 159
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 259, 598
BseLI CCNNNNNNNGG 1 cut(s) 130
BseRI GAGGAG 3 cut(s) 165, 168, 171
BseXI GCAGC 2 cut(s) 493, 506
BshFI GGCC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 267, 449
BsnI GGCC 1 cut(s) 216
BspACI CCGC 4 cut(s) 134, 161, 189, 527
BspANI GGCC 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 475
BspQI GCTCTTC 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 2 cut(s) 85, 429
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 259, 598
BstHHI GCGC 1 cut(s) 499
BstMAI GTCTC 2 cut(s) 267, 449
BstMWI GCNNNNNNNGC 3 cut(s) 344, 494, 503
BstSFI CTRYAG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 493, 506
BstV2I GAAGAC 2 cut(s) 27, 159
BsuRI GGCC 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 259, 598
BtsIMutI CAGTG 1 cut(s) 540
CfoI GCGC 1 cut(s) 499
DdeI CTNAG 1 cut(s) 249
Eam1104I CTCTTC 2 cut(s) 85, 429
EarI CTCTTC 2 cut(s) 85, 429
EciI GGCGGA 3 cut(s) 149, 178, 516
Eco57I CTGAAG 1 cut(s) 66
FaiI YATR 5 cut(s) 213, 232, 330, 390, 501
FalI AAGNNNNNCTT 4 cut(s) 303, 335, 411, 443
Fnu4HI GCNGC 3 cut(s) 161, 495, 507
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 3 cut(s) 161, 495, 507
GlaI GCGC 1 cut(s) 498
GluI GCNGC 3 cut(s) 161, 495, 507
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 405
HhaI GCGC 1 cut(s) 499
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HinfI GANTC 2 cut(s) 69, 544
HpaII CCGG 1 cut(s) 405
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 3 cut(s) 68, 110, 516
Hpy8I GTNNAC 1 cut(s) 580
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 7 cut(s) 39, 68, 124, 195, 254, 385, 583
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4V TGCA 4 cut(s) 19, 114, 323, 509
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 494, 503
HpyF3I CTNAG 1 cut(s) 249
HspAI GCGC 1 cut(s) 497
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 473
LpnPI CCDG 3 cut(s) 64, 418, 444
Lsp1109I GCAGC 2 cut(s) 493, 506
LweI GCATC 2 cut(s) 101, 518
MaeIII GTNAC 3 cut(s) 199, 315, 397
MfeI CAATTG 1 cut(s) 559
MluCI AATT 3 cut(s) 21, 104, 559
MlyI GAGTC 1 cut(s) 538
MnlI CCTC 7 cut(s) 36, 106, 130, 186, 189, 192, 298
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 1 cut(s) 242
MspI CCGG 1 cut(s) 405
MunI CAATTG 1 cut(s) 559
MwoI GCNNNNNNNGC 3 cut(s) 344, 494, 503
NlaIV GGNNCC 1 cut(s) 475
NmuCI GTSAC 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 429
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 162, 496, 508
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PspN4I GGNNCC 1 cut(s) 475
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 3 cut(s) 161, 495, 507
SchI GAGTC 1 cut(s) 538
SetI ASST 7 cut(s) 60, 94, 248, 424, 438, 508, 524
SfaNI GCATC 2 cut(s) 101, 518
SfcI CTRYAG 1 cut(s) 531
Sse9I AATT 3 cut(s) 21, 104, 559
SsiI CCGC 4 cut(s) 134, 161, 189, 527
TaaI ACNGT 1 cut(s) 535
TaqI TCGA 2 cut(s) 98, 446
TasI AATT 3 cut(s) 21, 104, 559
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 2 cut(s) 494, 506
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 540
XapI RAATTY 2 cut(s) 21, 104
XmnI GAANNNNTTC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.