Rh5AG314300

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015262
Physical Location & Seq
Forward (+)
45472925 .. 45473998
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG314300.1

Sequence Viewer

Length: 615 bp
ATGGCAACAGCTCTGCTACTCCCTCCTTCTCCTTGTCTTTCCTCTGCTTCTTTCTTGAACAACAATGGAGAACCAAGAAGTTGCTGCTGTGCCTCTATTCAACAATCCAAGCGCAATTCTCACTTGAAAGGTTTAAGAGTCAGAGCCCTCAAAGAGAAAACGGAGAAAATCGAAAACCCATCTTCATCTTCTTCATCTTCTTCATCTTCTAAAGCTTCAGCAGAGGAAATTACCAAGAAGTATGGACTTGAAGCTGGTCTCTGGAAGATATTCAGCTCAAAAGAGGAAGAAAAGGAAGGTGAAAAGAAGAAGTCAAAGGGTGATGAAGCCAAGGAATTGCTAGCTAAATATGGAGGGGCATACCTGGCCACCTCTATTGCACTATCCATTATATCATTTTCGTTGTGTTATGCGTTGATCAGCGTCGGAGTTGATGTCCAAGCTTTGCTGCAGAAGGTTGGAATCTCAGGTAGTGAGGCTGGAGAGAAAGTTGGAACTTTTGCTTTGGCATATGCTGCACATAAAGCTGCATCTCCAATTAGGTTTCCTCCAACTGTGGCTCTCACTCCAGTAGTCGCCGGTTGGATTGGGAAGATAGTTGGAAAAGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

204

Amino Acids

21.53

Weight (kDa)

9.3

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 109 - 191 4.7e-25 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27290
fragaria_vesca FvH4_3g25980
malus_domestica MD03G1152600.v1.1 MD11G1172600.v1.1
prunus_persica Prupe.6G139600_v2.0.a1
pyrus_communis pycom11g14560
rosa_chinensis RchiOBHm_Chr5g0047271
rosa_laevigata RLG00000034485
rosa_multiflora Rmu_sc0003154.1_g000004
rosa_roxburghii Rroxscaffold_1G00034090
rosa_rugosa Rorug05G0235300
rosa_samantha Rh5AG314300 Rh5BG323000 Rh5CG350200 Rh5DG334000
rosa_wichuraiana Rw5G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 201
AgsI TTSAA 4 cut(s) 58, 101, 127, 251
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 7 cut(s) 11, 215, 254, 276, 344, 443, 527
AluI AGCT 7 cut(s) 11, 215, 254, 276, 344, 443, 527
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 4 cut(s) 84, 448, 515, 527
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 311, 332
AsuNHI GCTAGC 1 cut(s) 340
BalI TGGCCA 1 cut(s) 368
BanII GRGCYC 1 cut(s) 148
BbvI GCAGC 4 cut(s) 71, 435, 502, 514
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 365
BclI TGATCA 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 449
BisI GCNGC 4 cut(s) 85, 449, 516, 528
BlsI GCNGC 4 cut(s) 86, 450, 517, 529
Bme1390I CCNGG 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 539
BmtI GCTAGC 1 cut(s) 344
BpmI CTGGAG 2 cut(s) 501, 552
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 330
BsaXI ACNNNNNCTCC 4 cut(s) 420, 450, 474, 504
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 1 cut(s) 569
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 1 cut(s) 569
BseXI GCAGC 4 cut(s) 71, 435, 502, 514
BsgI GTGCAG 1 cut(s) 501
BshFI GGCC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 579
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 417
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 479
BspMAI CTGCAG 1 cut(s) 453
BspOI GCTAGC 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 1 cut(s) 569
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 556
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 466
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 420
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 417
BstMWI GCNNNNNNNGC 3 cut(s) 365, 515, 524
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 449
BstV1I GCAGC 4 cut(s) 71, 435, 502, 514
BsuRI GGCC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 578
CseI GACGC 1 cut(s) 412
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
DdeI CTNAG 1 cut(s) 466
DpnI GATC 1 cut(s) 419
DpnII GATC 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 330
FaiI YATR 8 cut(s) 243, 351, 361, 392, 411, 511, 513, 522
FauNDI CATATG 1 cut(s) 511
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 4 cut(s) 85, 449, 516, 528
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 85, 449, 516, 528
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 113
GluI GCNGC 4 cut(s) 85, 449, 516, 528
GsuI CTGGAG 2 cut(s) 501, 552
HaeIII GGCC 1 cut(s) 368
HapII CCGG 1 cut(s) 579
HgaI GACGC 1 cut(s) 412
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 213, 441
HinfI GANTC 2 cut(s) 138, 462
HpaII CCGG 1 cut(s) 579
HphI GGTGA 2 cut(s) 311, 332
Hpy188I TCNGA 2 cut(s) 143, 428
Hpy188III TCNNGA 2 cut(s) 55, 262
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 3 cut(s) 36, 290, 448
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4V TGCA 4 cut(s) 380, 451, 518, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 515, 524
HpyF3I CTNAG 1 cut(s) 466
HspAI GCGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 1 cut(s) 417
LpnPI CCDG 8 cut(s) 240, 247, 350, 377, 453, 465, 582, 592
Lsp1109I GCAGC 4 cut(s) 71, 435, 502, 514
LweI GCATC 1 cut(s) 539
MaeI CTAG 1 cut(s) 341
MalI GATC 1 cut(s) 419
MboI GATC 1 cut(s) 417
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 4 cut(s) 115, 228, 335, 537
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 6 cut(s) 406, 439, 472, 563, 575, 580
Mox20I TGGCCA 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 269
MscI TGGCCA 1 cut(s) 368
MseI TTAA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 368
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 365, 515, 524
NdeI CATATG 1 cut(s) 511
NdeII GATC 1 cut(s) 417
NheI GCTAGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 462
PkrI GCNGC 4 cut(s) 86, 450, 517, 529
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PstI CTGCAG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 4 cut(s) 85, 449, 516, 528
Sau3AI GATC 1 cut(s) 417
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 1 cut(s) 539
SfcI CTRYAG 1 cut(s) 449
Sse9I AATT 4 cut(s) 115, 228, 335, 537
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 556
TaqI TCGA 1 cut(s) 171
TasI AATT 4 cut(s) 115, 228, 335, 537
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 4 cut(s) 84, 448, 515, 527
TspDTI ATGAA 4 cut(s) 174, 183, 192, 339
TspGWI ACGGA 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.