MD11G1172600.v1.1

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015262
Physical Location & Seq
Forward (+)
19161563 .. 19163218
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1172600.v1.1.491

Sequence Viewer

Length: 582 bp
ATGGCATCAGCTCTGGTCTCCCCTTGTCTTCCCTCTGCTTCTTTCTTCAACAACAATGGAAGTTCAAGATTTTGCTGCTGTCCATCATCAGTTGAAGCATCCAAGTCCAAATCTTACTCGAAACGTTTCGGAGTCAGAGCCCTCAAGGAGAAAACTGAGGAAACAAAAACCCCATCTGCTGATTCAGCTGACGAAGTTACTAAAAAGTACGGCCTCGAAGCCGGTCTGTGGAAGATATTCAGCTCAAGAGAGGAAGGAAAGGAAGGAGAAGAGAAGAAGTCAAAGGGAGATGAAGCCAAGAAGCTGCTAGCAAAATATGGAGGGGCATACTTAGCCACATCCATTGTTCTCTCTTTAATCTCGTTTTCCTTATGTTACGCACTCATCAGCGCCGGCGTCGATGTCCAGGCTTTGCTGCAAAAGGTGGGAATTTCTGGCAGTGAGACCGGAGAGAGGGTTGGGACGTTTGCTTTGGCATATGCTGCGCACAAGGCCGCGTCCCCAATTAGGTTTCCTCCGACAGTAGCTCTCACTCCCATTGTCGCCCGATGGATCGGAAAGAAAGTTGAGAAGGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

194

Amino Acids

20.62

Weight (kDa)

9.12

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 98 - 180 6.8e-26 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27290
fragaria_vesca FvH4_3g25980
malus_domestica MD03G1152600.v1.1 MD11G1172600.v1.1
prunus_persica Prupe.6G139600_v2.0.a1
pyrus_communis pycom11g14560
rosa_chinensis RchiOBHm_Chr5g0047271
rosa_laevigata RLG00000034485
rosa_multiflora Rmu_sc0003154.1_g000004
rosa_roxburghii Rroxscaffold_1G00034090
rosa_rugosa Rorug05G0235300
rosa_samantha Rh5AG314300 Rh5BG323000 Rh5CG350200 Rh5DG334000
rosa_wichuraiana Rw5G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 486
AccII CGCG 1 cut(s) 497
AciI CCGC 1 cut(s) 495
AclI AACGTT 1 cut(s) 124
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 228, 453, 507
AgsI TTSAA 3 cut(s) 49, 66, 95
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 5 cut(s) 11, 188, 243, 304, 527
AluI AGCT 5 cut(s) 11, 188, 243, 304, 527
Alw26I GTCTC 2 cut(s) 22, 437
AlwI GGATC 1 cut(s) 560
AoxI GGCC 2 cut(s) 211, 492
ApeKI GCWGC 4 cut(s) 75, 304, 415, 482
ApoI RAATTY 1 cut(s) 429
ArsI GACNNNNNNTTYG 2 cut(s) 454, 486
Asp700I GAANNNNTTC 2 cut(s) 125, 236
AspLEI GCGC 2 cut(s) 392, 487
AsuNHI GCTAGC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 4 cut(s) 62, 291, 402, 469
BccI CCATC 3 cut(s) 91, 181, 543
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 22, 437
BfaI CTAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 393
BisI GCNGC 5 cut(s) 76, 305, 416, 483, 495
BlsI GCNGC 5 cut(s) 77, 306, 417, 484, 496
Bme1390I CCNGG 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 2 cut(s) 14, 107
BmtI GCTAGC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 128, 229
BsaHI GRCGYC 1 cut(s) 396
BsaI GGTCTC 2 cut(s) 22, 437
BsaWI WCCGGW 1 cut(s) 446
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 453, 507
Bse118I RCCGGY 2 cut(s) 221, 392
BseBI CCWGG 1 cut(s) 407
BseGI GGATG 2 cut(s) 98, 338
BseLI CCNNNNNNNGG 3 cut(s) 228, 453, 507
BseMII CTCAG 1 cut(s) 147
BseXI GCAGC 4 cut(s) 62, 291, 402, 469
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 2 cut(s) 213, 494
BsiSI CCGG 3 cut(s) 222, 393, 447
BslFI GGGAC 2 cut(s) 475, 484
BslI CCNNNNNNNGG 3 cut(s) 228, 453, 507
BsmAI GTCTC 2 cut(s) 22, 437
BsmFI GGGAC 2 cut(s) 475, 484
BsnI GGCC 2 cut(s) 213, 494
Bso31I GGTCTC 2 cut(s) 22, 437
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 552
BspACI CCGC 1 cut(s) 495
BspANI GGCC 2 cut(s) 213, 494
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 497
BspOI GCTAGC 1 cut(s) 311
BspPI GGATC 1 cut(s) 560
BspTNI GGTCTC 2 cut(s) 22, 437
BsrFI RCCGGY 2 cut(s) 221, 392
BssAI RCCGGY 2 cut(s) 221, 392
BssMI GATC 1 cut(s) 552
BssNI GRCGYC 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 309, 394
BstDEI CTNAG 2 cut(s) 156, 331
BstF5I GGATG 2 cut(s) 98, 338
BstFNI CGCG 1 cut(s) 497
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 2 cut(s) 392, 487
BstKTI GATC 1 cut(s) 555
BstMAI GTCTC 2 cut(s) 22, 437
BstMBI GATC 1 cut(s) 552
BstMWI GCNNNNNNNGC 4 cut(s) 185, 332, 482, 491
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 4 cut(s) 62, 291, 402, 469
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 213, 494
BtsCI GGATG 2 cut(s) 98, 338
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 309, 394
CfoI GCGC 2 cut(s) 392, 487
Cfr10I RCCGGY 2 cut(s) 221, 392
CseI GACGC 2 cut(s) 385, 486
Csp6I GTAC 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 156, 331
DpnI GATC 1 cut(s) 554
DpnII GATC 1 cut(s) 552
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 2 cut(s) 22, 437
EcoRII CCWGG 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 142
FaiI YATR 5 cut(s) 318, 328, 373, 478, 480
FaqI GGGAC 2 cut(s) 475, 484
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 5 cut(s) 76, 305, 416, 483, 495
FokI GGATG 2 cut(s) 85, 325
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 5 cut(s) 76, 305, 416, 483, 495
FspBI CTAG 1 cut(s) 308
FspI TGCGCA 1 cut(s) 486
GlaI GCGC 2 cut(s) 391, 486
GluI GCNGC 5 cut(s) 76, 305, 416, 483, 495
HaeII RGCGCY 1 cut(s) 393
HaeIII GGCC 2 cut(s) 213, 494
HapII CCGG 3 cut(s) 222, 393, 447
HgaI GACGC 2 cut(s) 385, 486
HhaI GCGC 2 cut(s) 392, 487
Hin1I GRCGYC 1 cut(s) 396
Hin6I GCGC 2 cut(s) 390, 485
HinP1I GCGC 2 cut(s) 390, 485
HinfI GANTC 2 cut(s) 132, 182
HpaII CCGG 3 cut(s) 222, 393, 447
Hpy188I TCNGA 4 cut(s) 131, 137, 519, 557
Hpy188III TCNNGA 2 cut(s) 66, 246
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 248, 257, 565
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 2 cut(s) 124, 464
HpyCH4V TGCA 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 332, 482, 491
HpyF3I CTNAG 2 cut(s) 156, 331
HpySE526I ACGT 2 cut(s) 124, 464
Hsp92I GRCGYC 1 cut(s) 396
HspAI GCGC 2 cut(s) 390, 485
KroI GCCGGC 1 cut(s) 392
KroNI GCCGGC 1 cut(s) 394
Kzo9I GATC 1 cut(s) 552
LpnPI CCDG 6 cut(s) 235, 392, 406, 419, 420, 460
Lsp1109I GCAGC 4 cut(s) 62, 291, 402, 469
LweI GCATC 2 cut(s) 14, 107
MaeI CTAG 1 cut(s) 308
MaeII ACGT 2 cut(s) 124, 464
MaeIII GTNAC 2 cut(s) 196, 374
MalI GATC 1 cut(s) 554
MboI GATC 1 cut(s) 552
MboII GAAGA 5 cut(s) 20, 37, 244, 281, 286
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 2 cut(s) 429, 504
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 9 cut(s) 43, 151, 152, 224, 244, 314, 447, 525, 568
MreI CGCCGGCG 1 cut(s) 392
MroNI GCCGGC 1 cut(s) 392
MroXI GAANNNNTTC 2 cut(s) 125, 236
MseI TTAA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 3 cut(s) 222, 393, 447
MspR9I CCNGG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 4 cut(s) 185, 332, 482, 491
NaeI GCCGGC 1 cut(s) 394
NdeI CATATG 1 cut(s) 478
NdeII GATC 1 cut(s) 552
NgoMIV GCCGGC 1 cut(s) 392
NheI GCTAGC 1 cut(s) 307
NsbI TGCGCA 1 cut(s) 486
PdiI GCCGGC 1 cut(s) 394
PdmI GAANNNNTTC 2 cut(s) 125, 236
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 5 cut(s) 77, 306, 417, 484, 496
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 5 cut(s) 76, 305, 416, 483, 495
Sau3AI GATC 1 cut(s) 552
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 1 cut(s) 142
SetI ASST 9 cut(s) 13, 127, 190, 245, 306, 426, 467, 512, 529
SfaNI GCATC 2 cut(s) 14, 107
SgrAI CRCCGGYG 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 143, 244
SmoI CTYRAG 2 cut(s) 143, 244
Sse9I AATT 2 cut(s) 429, 504
SsiI CCGC 1 cut(s) 495
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 405
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 2 cut(s) 127, 467
TaqI TCGA 3 cut(s) 119, 216, 399
TasI AATT 2 cut(s) 429, 504
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 445
TseI GCWGC 4 cut(s) 75, 304, 415, 482
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 1 cut(s) 445
XapI RAATTY 1 cut(s) 429
XmnI GAANNNNTTC 2 cut(s) 125, 236
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.