Rroxscaffold_1G00034090

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015262
Physical Location & Seq
Reverse (-)
49369210 .. 49370569
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034090.1

Sequence Viewer

Length: 603 bp
ATGGCAACAGCTCTGCTGCTCCCTCCTTCTCCTTGTCTTTCCTCTGCTTCTTTCTTGAACAACAATGGAGAACTAAGAAGTTGCTGCTGTGCCTCTATTCAACAATCCAAGCGCAATTCTCACTTGAAAGGTTTAAGAGTCAGAGCCCTCAAAGAGAAAACGGAGAAAATCGAAAACCCATCTTCATCTTCTTCATCTTCTAAAGCTTCAGCAGAGGAAATTACCAAGAAGTATGGACTTGAAGCTGGTCTCTGGAAGATATTCAGCTCAAAAGACGAAGAAAAGGAAGGTGAAAAGAAGTCAAAGGGTGATGAAGCCAAGGAATTGCTAGCTAAATATGGAGGGGCATACCTGGCCACCTCTATTGCACTATCCATTATATCGTTTTCGTTGTGCTATGCGTTAATCAGCGTCGGAGTTGATGTCCAAGCTTTGCTGCAGAAGGTTGGAATCTCAAGTAGTGAGGCTGGAGAGAAAGTTGGAACTTTTGCTTTGGCATATGCTGCACACAAAGCTGCATCTCCAATTAGGTTTCCTCCAACTGTGGCTCTCACTCCAGTAGTCGCCGGTTGGATTGGGAAGATAGTCGGAAAAGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

200

Amino Acids

21.17

Weight (kDa)

9.22

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 105 - 187 1.1e-25 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27290
fragaria_vesca FvH4_3g25980
malus_domestica MD03G1152600.v1.1 MD11G1172600.v1.1
prunus_persica Prupe.6G139600_v2.0.a1
pyrus_communis pycom11g14560
rosa_chinensis RchiOBHm_Chr5g0047271
rosa_laevigata RLG00000034485
rosa_multiflora Rmu_sc0003154.1_g000004
rosa_roxburghii Rroxscaffold_1G00034090
rosa_rugosa Rorug05G0235300
rosa_samantha Rh5AG314300 Rh5BG323000 Rh5CG350200 Rh5DG334000
rosa_wichuraiana Rw5G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 192
AgsI TTSAA 4 cut(s) 58, 101, 127, 242
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 7 cut(s) 11, 206, 245, 267, 332, 431, 515
AluI AGCT 7 cut(s) 11, 206, 245, 267, 332, 431, 515
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 5 cut(s) 16, 84, 436, 503, 515
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 302, 320
AsuNHI GCTAGC 1 cut(s) 328
BalI TGGCCA 1 cut(s) 356
BanII GRGCYC 1 cut(s) 148
BbvI GCAGC 5 cut(s) 3, 71, 423, 490, 502
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 437
BisI GCNGC 5 cut(s) 17, 85, 437, 504, 516
BlsI GCNGC 5 cut(s) 18, 86, 438, 505, 517
Bme1390I CCNGG 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 527
BmtI GCTAGC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 489, 540
BpuEI CTTGAG 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 318
BsaXI ACNNNNNCTCC 4 cut(s) 408, 438, 462, 492
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 557
BseXI GCAGC 5 cut(s) 3, 71, 423, 490, 502
BsgI GTGCAG 1 cut(s) 489
BshFI GGCC 1 cut(s) 356
BsiSI CCGG 1 cut(s) 567
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 356
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 148
BspANI GGCC 1 cut(s) 356
BspMAI CTGCAG 1 cut(s) 441
BspOI GCTAGC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 1 cut(s) 557
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 3 cut(s) 353, 503, 512
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 437
BstV1I GCAGC 5 cut(s) 3, 71, 423, 490, 502
BsuRI GGCC 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 330
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 566
CseI GACGC 1 cut(s) 400
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
DdeI CTNAG 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 318
FaiI YATR 7 cut(s) 234, 339, 349, 380, 399, 499, 501
FauNDI CATATG 1 cut(s) 499
Fnu4HI GCNGC 5 cut(s) 17, 85, 437, 504, 516
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 5 cut(s) 17, 85, 437, 504, 516
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 113
GluI GCNGC 5 cut(s) 17, 85, 437, 504, 516
GsuI CTGGAG 2 cut(s) 489, 540
HaeIII GGCC 1 cut(s) 356
HapII CCGG 1 cut(s) 567
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 204, 429
HinfI GANTC 2 cut(s) 138, 450
HpaII CCGG 1 cut(s) 567
HphI GGTGA 2 cut(s) 302, 320
Hpy188I TCNGA 3 cut(s) 143, 416, 590
Hpy188III TCNNGA 2 cut(s) 55, 253
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 3 cut(s) 36, 281, 436
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4V TGCA 4 cut(s) 368, 439, 506, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 503, 512
HpyF3I CTNAG 1 cut(s) 74
HspAI GCGC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 7 cut(s) 231, 238, 338, 365, 453, 570, 580
Lsp1109I GCAGC 5 cut(s) 3, 71, 423, 490, 502
LweI GCATC 1 cut(s) 527
MaeI CTAG 1 cut(s) 329
MboII GAAGA 7 cut(s) 174, 180, 183, 189, 268, 290, 592
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 4 cut(s) 115, 219, 323, 525
MluNI TGGCCA 1 cut(s) 356
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 6 cut(s) 394, 427, 460, 551, 563, 568
MnlI CCTC 9 cut(s) 33, 52, 103, 158, 208, 335, 370, 457, 546
Mox20I TGGCCA 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 356
MseI TTAA 2 cut(s) 134, 404
Msp20I TGGCCA 1 cut(s) 356
MspI CCGG 1 cut(s) 567
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 353, 503, 512
NdeI CATATG 1 cut(s) 499
NheI GCTAGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 5 cut(s) 18, 86, 438, 505, 517
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PstI CTGCAG 1 cut(s) 441
SaqAI TTAA 2 cut(s) 134, 404
SatI GCNGC 5 cut(s) 17, 85, 437, 504, 516
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 1 cut(s) 527
SfcI CTRYAG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 4 cut(s) 115, 219, 323, 525
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 544
TaqI TCGA 1 cut(s) 171
TasI AATT 4 cut(s) 115, 219, 323, 525
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 2 cut(s) 134, 404
Tru9I TTAA 2 cut(s) 134, 404
TseI GCWGC 5 cut(s) 16, 84, 436, 503, 515
TspDTI ATGAA 3 cut(s) 174, 183, 327
TspGWI ACGGA 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.