MD03G1152600.v1.1

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015262
Physical Location & Seq
Forward (+)
17337439 .. 17338397
959 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1152600.v1.1.491

Sequence Viewer

Length: 348 bp
ATGCGTTTCGAGACTATCGCTCAGATATTCAGCTCAAAAGAGAAAGGAAAGGAAGGAGAAGAGAAGTCGTCAAAGGGAGATGAAGCCAAGAACCTGCTAGCAAAATATGGAGGGGCATACTTAGCCACATCCATTACTCTCTCCATCATCTCGTTTTCGTTATGTTATGAACTCATCGGCGCCGGCGTTGATGTCCAAGCTTTGCTGCAAAAGGTGGGAATGTCCGATGGCAAGACCGGAGAGAAGGTTGGGACATTCGCTTTGGCATACGCTGCACACAAGGCCGCTTCTCCGATTAGGTATCCTCCGACAGTAGCTCTCACTCCCGTTGTAGCCAGATGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

116

Amino Acids

12.26

Weight (kDa)

9.01

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 28 - 110 4.5e-26 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27290
fragaria_vesca FvH4_3g25980
malus_domestica MD03G1152600.v1.1 MD11G1172600.v1.1
prunus_persica Prupe.6G139600_v2.0.a1
pyrus_communis pycom11g14560
rosa_chinensis RchiOBHm_Chr5g0047271
rosa_laevigata RLG00000034485
rosa_multiflora Rmu_sc0003154.1_g000004
rosa_roxburghii Rroxscaffold_1G00034090
rosa_rugosa Rorug05G0235300
rosa_samantha Rh5AG314300 Rh5BG323000 Rh5CG350200 Rh5DG334000
rosa_wichuraiana Rw5G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 179
AciI CCGC 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 180
AluBI AGCT 3 cut(s) 33, 200, 317
AluI AGCT 3 cut(s) 33, 200, 317
Alw26I GTCTC 1 cut(s) 5
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 205, 272
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
AspLEI GCGC 1 cut(s) 182
AsuNHI GCTAGC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 192, 259
BccI CCATC 3 cut(s) 152, 221, 333
BciVI GTATCC 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 102
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 3 cut(s) 206, 273, 285
BlsI GCNGC 3 cut(s) 207, 274, 286
BmiI GGNNCC 1 cut(s) 181
BmtI GCTAGC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse118I RCCGGY 1 cut(s) 182
BseGI GGATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 192, 259
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 183, 237
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 102
BspOI GCTAGC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssMI GATC 1 cut(s) 342
BssNI GRCGYC 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 99, 184
BstDEI CTNAG 2 cut(s) 21, 121
BstF5I GGATG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 3 cut(s) 122, 272, 281
BstV1I GCAGC 2 cut(s) 192, 259
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 128
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 99, 184
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 182
CviJI RGCY 7 cut(s) 33, 86, 125, 200, 284, 317, 335
CviKI_1 RGCY 7 cut(s) 33, 86, 125, 200, 284, 317, 335
DdeI CTNAG 2 cut(s) 21, 121
DinI GGCGCC 1 cut(s) 181
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
FaiI YATR 5 cut(s) 108, 118, 163, 168, 268
FaqI GGGAC 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 206, 273, 285
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 3 cut(s) 206, 273, 285
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 181
GluI GCNGC 3 cut(s) 206, 273, 285
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 1 cut(s) 284
HapII CCGG 2 cut(s) 183, 237
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 198
HpaII CCGG 2 cut(s) 183, 237
Hpy188I TCNGA 5 cut(s) 24, 226, 294, 309, 347
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 47, 238
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 2 cut(s) 208, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 272, 281
HpyF3I CTNAG 2 cut(s) 21, 121
Hsp92I GRCGYC 1 cut(s) 180
HspAI GCGC 1 cut(s) 180
KasI GGCGCC 1 cut(s) 179
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 342
LpnPI CCDG 3 cut(s) 107, 196, 250
Lsp1109I GCAGC 2 cut(s) 192, 259
MaeI CTAG 1 cut(s) 98
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 1 cut(s) 71
MflI RGATCY 1 cut(s) 342
Mly113I GGCGCC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 2 cut(s) 104, 315
MreI CGCCGGCG 1 cut(s) 182
MroNI GCCGGC 1 cut(s) 182
MspI CCGG 2 cut(s) 183, 237
MwoI GCNNNNNNNGC 3 cut(s) 122, 272, 281
NaeI GCCGGC 1 cut(s) 184
NarI GGCGCC 1 cut(s) 180
NdeII GATC 1 cut(s) 342
NgoMIV GCCGGC 1 cut(s) 182
NheI GCTAGC 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PdiI GCCGGC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 207, 274, 286
PluTI GGCGCC 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 342
SatI GCNGC 3 cut(s) 206, 273, 285
Sau3AI GATC 1 cut(s) 342
SetI ASST 7 cut(s) 35, 96, 202, 216, 249, 302, 319
SfoI GGCGCC 1 cut(s) 181
SgrAI CRCCGGYG 1 cut(s) 182
SsiI CCGC 1 cut(s) 285
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 9
TauI GCSGC 1 cut(s) 287
TseI GCWGC 2 cut(s) 205, 272
TspDTI ATGAA 2 cut(s) 96, 183
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.