Rw5G029380

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0015262
Physical Location & Seq
Forward (+)
45039432 .. 45040503
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G029380.1

Sequence Viewer

Length: 606 bp
ATGGCAACAGCTCTGCTACTCCCTCCTTCTCCTTGTCTTTCCTCTGCTTCTTTCTTGAACAACAATGGAGAACCAAGAAGTTGCTGCTGTGCCTCTATTCAACAATCCAAGCGCAATTCTCACTTGAAAGGTTTAAGAGTCAGAGCCCTCAAAGAGAAAACGGAGAAAATCGAAAACCCATCTTCATCTTCTTCATCTTCTAAAGCTTCAGCAGAGGAAATTACCAAGAAGTATGGACTTGAAGCTGGTCTCTGGAAGATATTCAGCTCAAAAGAGGAAGAAAAGGAAGGTGAAAAGAAGAAGTCAAAGGGTGATGAAGCCAAGGAATTGCTAGCTAAATATGGAGGGGCATACCTGGCCACCTCTATTGCTCTATCCATTATATCATTTTCGTTGTGTTATGCGTTAATCAGCGTCGGAGTTGATGTCCAAGCTTTGCTGCAGAAGGTTGGAATCTCAGGTAGTGAGGCTGGAGAGAAAGTTGGAACTTTTGCTTTGGCATATGCTGCACATAAAGCTGCATCTCCAATTAGGTTTCCTCCAACTGTGGCTCTCACTCCAGTAGTCGCCGGTTGGATTGGGAAGATAGTCGGAAAAGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

201

Amino Acids

21.26

Weight (kDa)

9.3

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 106 - 188 4.5e-25 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27290
fragaria_vesca FvH4_3g25980
malus_domestica MD03G1152600.v1.1 MD11G1172600.v1.1
prunus_persica Prupe.6G139600_v2.0.a1
pyrus_communis pycom11g14560
rosa_chinensis RchiOBHm_Chr5g0047271
rosa_laevigata RLG00000034485
rosa_multiflora Rmu_sc0003154.1_g000004
rosa_roxburghii Rroxscaffold_1G00034090
rosa_rugosa Rorug05G0235300
rosa_samantha Rh5AG314300 Rh5BG323000 Rh5CG350200 Rh5DG334000
rosa_wichuraiana Rw5G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 192
AgsI TTSAA 4 cut(s) 58, 101, 127, 242
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 7 cut(s) 11, 206, 245, 267, 335, 434, 518
AluI AGCT 7 cut(s) 11, 206, 245, 267, 335, 434, 518
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 4 cut(s) 84, 439, 506, 518
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 302, 323
AsuNHI GCTAGC 1 cut(s) 331
BalI TGGCCA 1 cut(s) 359
BanII GRGCYC 1 cut(s) 148
BbvI GCAGC 4 cut(s) 71, 426, 493, 505
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 440
BisI GCNGC 4 cut(s) 85, 440, 507, 519
BlsI GCNGC 4 cut(s) 86, 441, 508, 520
Bme1390I CCNGG 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 530
BmtI GCTAGC 1 cut(s) 335
BpmI CTGGAG 2 cut(s) 492, 543
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 321
BsaXI ACNNNNNCTCC 4 cut(s) 411, 441, 465, 495
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 1 cut(s) 560
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 560
BseXI GCAGC 4 cut(s) 71, 426, 493, 505
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 570
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 148
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 470
BspMAI CTGCAG 1 cut(s) 444
BspOI GCTAGC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 569
BssECI CCNNGG 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 547
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 457
BstHHI GCGC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 3 cut(s) 356, 506, 515
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 440
BstV1I GCAGC 4 cut(s) 71, 426, 493, 505
BsuRI GGCC 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 569
CseI GACGC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
DdeI CTNAG 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 321
FaiI YATR 8 cut(s) 234, 342, 352, 383, 402, 502, 504, 513
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 85, 440, 507, 519
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 85, 440, 507, 519
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 113
GluI GCNGC 4 cut(s) 85, 440, 507, 519
GsuI CTGGAG 2 cut(s) 492, 543
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 570
HgaI GACGC 1 cut(s) 403
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 204, 432
HinfI GANTC 2 cut(s) 138, 453
HpaII CCGG 1 cut(s) 570
HphI GGTGA 2 cut(s) 302, 323
Hpy188I TCNGA 3 cut(s) 143, 419, 593
Hpy188III TCNNGA 2 cut(s) 55, 253
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 36, 281, 439
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4V TGCA 3 cut(s) 442, 509, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 506, 515
HpyF3I CTNAG 1 cut(s) 457
HspAI GCGC 1 cut(s) 112
LpnPI CCDG 8 cut(s) 231, 238, 341, 368, 444, 456, 573, 583
Lsp1109I GCAGC 4 cut(s) 71, 426, 493, 505
LweI GCATC 1 cut(s) 530
MaeI CTAG 1 cut(s) 332
MboII GAAGA 8 cut(s) 174, 180, 183, 189, 268, 290, 310, 595
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 4 cut(s) 115, 219, 326, 528
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 6 cut(s) 397, 430, 463, 554, 566, 571
Mox20I TGGCCA 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 359
MseI TTAA 2 cut(s) 134, 407
Msp20I TGGCCA 1 cut(s) 359
MspI CCGG 1 cut(s) 570
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 356, 506, 515
NdeI CATATG 1 cut(s) 502
NheI GCTAGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 453
PkrI GCNGC 4 cut(s) 86, 441, 508, 520
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PstI CTGCAG 1 cut(s) 444
SaqAI TTAA 2 cut(s) 134, 407
SatI GCNGC 4 cut(s) 85, 440, 507, 519
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 1 cut(s) 530
SfcI CTRYAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 115, 219, 326, 528
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 547
TaqI TCGA 1 cut(s) 171
TasI AATT 4 cut(s) 115, 219, 326, 528
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 2 cut(s) 134, 407
Tru9I TTAA 2 cut(s) 134, 407
TseI GCWGC 4 cut(s) 84, 439, 506, 518
TspDTI ATGAA 3 cut(s) 174, 183, 330
TspGWI ACGGA 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.