Rh5DG334000

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015262
Physical Location & Seq
Forward (+)
44190522 .. 44192141
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG334000.1

Sequence Viewer

Length: 507 bp
ATGGCAACAGCTCTGCTGCTCCCTCCTTCTCCTTGTCTTTCCTCTGCTTCTTTCTTGAAGAACAATGGAGAACCAAGAAGTTGCTGCTGTGCCTCTATTCAACAATCCAAGCGCAATTCTCACTTGAAAGGTTTAAGAGTCAGAGCCCTCAAAGAGAAAACGGAGAAAATCGAAAACCCATCTTCATCTTCTTCATCTTCTAAAGCTTCAGCAGAGGAAATTACCAAGAAGTATGGACTTGAAGCTGGTCTCTGGAAGATATTCAGCTCAAAAGAGGAAGAAAAGGAAGGTGAAAAGAAGAAGTCAAAGGGTGATGAAGCCAAGGAATTGCTAGCTAAATATGGAGGGGCATACCTGGCCACCTCTATTGCACTATCCATTATATCATTTTCGTTGTGTTATGCGTTAATCAGCGTCGGAGTTGACGTCCAAGCTTTGCTGCAGAAGGTACAAGCAACCATCATATCAACTCTCTGTAGACTCAACTTGTTTTGTGTTATGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

168

Amino Acids

18.19

Weight (kDa)

9.16

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 106 - 152 3e-11 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27290
fragaria_vesca FvH4_3g25980
malus_domestica MD03G1152600.v1.1 MD11G1172600.v1.1
prunus_persica Prupe.6G139600_v2.0.a1
pyrus_communis pycom11g14560
rosa_chinensis RchiOBHm_Chr5g0047271
rosa_laevigata RLG00000034485
rosa_multiflora Rmu_sc0003154.1_g000004
rosa_roxburghii Rroxscaffold_1G00034090
rosa_rugosa Rorug05G0235300
rosa_samantha Rh5AG314300 Rh5BG323000 Rh5CG350200 Rh5DG334000
rosa_wichuraiana Rw5G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 429
AccI GTMKAC 1 cut(s) 478
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 1 cut(s) 450
AgsI TTSAA 4 cut(s) 58, 101, 127, 242
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 6 cut(s) 11, 206, 245, 267, 335, 434
AluI AGCT 6 cut(s) 11, 206, 245, 267, 335, 434
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 3 cut(s) 16, 84, 439
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 302, 323
AsuNHI GCTAGC 1 cut(s) 331
BalI TGGCCA 1 cut(s) 359
BanII GRGCYC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 3, 71, 426
BccI CCATC 2 cut(s) 187, 467
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 2 cut(s) 440, 475
BisI GCNGC 3 cut(s) 17, 85, 440
BlsI GCNGC 3 cut(s) 18, 86, 441
Bme1390I CCNGG 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 356
BmtI GCTAGC 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 321
BseXI GCAGC 3 cut(s) 3, 71, 426
BshFI GGCC 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 148
BspANI GGCC 1 cut(s) 359
BspMAI CTGCAG 1 cut(s) 444
BspOI GCTAGC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 321
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 333
BstHHI GCGC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 2 cut(s) 440, 475
BstV1I GCAGC 3 cut(s) 3, 71, 426
BsuRI GGCC 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 114
CseI GACGC 1 cut(s) 403
Csp6I GTAC 1 cut(s) 449
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviJI RGCY 9 cut(s) 11, 146, 206, 245, 267, 320, 335, 359, 434
CviKI_1 RGCY 9 cut(s) 11, 146, 206, 245, 267, 320, 335, 359, 434
CviQI GTAC 1 cut(s) 449
EaeI YGGCCR 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 321
FaiI YATR 7 cut(s) 234, 342, 352, 383, 402, 464, 500
FblI GTMKAC 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 17, 85, 440
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 3 cut(s) 17, 85, 440
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 17, 85, 440
HaeIII GGCC 1 cut(s) 359
HgaI GACGC 1 cut(s) 403
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 426
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HindIII AAGCTT 2 cut(s) 204, 432
HinfI GANTC 2 cut(s) 138, 480
HphI GGTGA 2 cut(s) 302, 323
Hpy166II GTNNAC 2 cut(s) 424, 479
Hpy188I TCNGA 2 cut(s) 143, 419
Hpy188III TCNNGA 2 cut(s) 55, 253
Hpy8I GTNNAC 2 cut(s) 424, 479
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 36, 281, 439
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 3 cut(s) 371, 442, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 426
Hsp92I GRCGYC 1 cut(s) 426
HspAI GCGC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 231, 238, 341, 368
Lsp1109I GCAGC 3 cut(s) 3, 71, 426
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 426
MboII GAAGA 8 cut(s) 70, 174, 180, 183, 189, 268, 290, 310
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 3 cut(s) 115, 219, 326
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 2 cut(s) 147, 474
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 8 cut(s) 33, 52, 103, 158, 208, 268, 338, 373
Mox20I TGGCCA 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 359
MseI TTAA 2 cut(s) 134, 407
Msp20I TGGCCA 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 1 cut(s) 356
NheI GCTAGC 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 260
PkrI GCNGC 3 cut(s) 18, 86, 441
PleI GAGTC 2 cut(s) 146, 474
PpsI GAGTC 2 cut(s) 146, 474
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PstI CTGCAG 1 cut(s) 444
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SaqAI TTAA 2 cut(s) 134, 407
SatI GCNGC 3 cut(s) 17, 85, 440
SchI GAGTC 2 cut(s) 147, 474
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 148
SfcI CTRYAG 2 cut(s) 440, 475
Sse9I AATT 3 cut(s) 115, 219, 326
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 321
TaiI ACGT 1 cut(s) 429
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 115, 219, 326
Tru1I TTAA 2 cut(s) 134, 407
Tru9I TTAA 2 cut(s) 134, 407
TseI GCWGC 3 cut(s) 16, 84, 439
TspDTI ATGAA 3 cut(s) 174, 183, 330
TspGWI ACGGA 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 332
ZraI GACGTC 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.