FvH4_3g25980

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015262
Physical Location & Seq
Forward (+)
18797687 .. 18799199
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25980.t1

Sequence Viewer

Length: 594 bp
ATGGCAACTCTGTTACTCCCCCCTTCTCCTTGTCTTCCCTCTGCTTCTTTCTTGAAGAACAATGGAGAACCAAGAAGTTGCTGCTGTGCCTCAGTTCAACAATCCAAGCGTAACACTAACTTGAAAGGTTTCAGAGTCCGAGCCCTCAAAGAGAAAACGGAGAAAATCGAAAACCCATCTTCATCTTCTTCGTCTTCAGCTGAGGAAATCACCAAGAAGTATGGTCTTGAAGCTGGTCTGTGGAAGATATTCAGTTCAAAAGAGGAAGGAAAGGAATATGAAGAGAAGAAGTCAAAGGGTGATGAAGCCAAGGAATTGCTAGCTAAATATGGAGGGGCTTACCTGGCCACCTCAATCACTCTATCCATTATATCGTTTTCGTTATGTTATGTGCTAATCAGCGCCGGTGTTGATGTTCAGGCTTTGCTGCAGAAGGTTGGAATCTCAAGTAATGAGGCGGGAGAGAAAGTGGGGACTTTTGCTTTGGCATATGCTGCACACAAGGCTGCATCTCCAATTAGGTTTCCTCCAACTGTGGCTCTCACTCCGGTGGTCGCCAGTTGGATCGGAAAGATAGTCGGAAAAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

198

Amino Acids

21.09

Weight (kDa)

9.21

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 102 - 184 8.4e-27 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27290
fragaria_vesca FvH4_3g25980
malus_domestica MD03G1152600.v1.1 MD11G1172600.v1.1
prunus_persica Prupe.6G139600_v2.0.a1
pyrus_communis pycom11g14560
rosa_chinensis RchiOBHm_Chr5g0047271
rosa_laevigata RLG00000034485
rosa_multiflora Rmu_sc0003154.1_g000004
rosa_roxburghii Rroxscaffold_1G00034090
rosa_rugosa Rorug05G0235300
rosa_samantha Rh5AG314300 Rh5BG323000 Rh5CG350200 Rh5DG334000
rosa_wichuraiana Rw5G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 458
AclWI GGATC 1 cut(s) 572
AcoI YGGCCR 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 180
AgsI TTSAA 5 cut(s) 55, 98, 124, 230, 258
AjnI CCWGG 1 cut(s) 342
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 3 cut(s) 200, 233, 323
AluI AGCT 3 cut(s) 200, 233, 323
AlwI GGATC 1 cut(s) 572
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 4 cut(s) 81, 427, 494, 506
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
Asp700I GAANNNNTTC 2 cut(s) 128, 248
AspLEI GCGC 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 202, 311
AsuNHI GCTAGC 1 cut(s) 319
BalI TGGCCA 1 cut(s) 347
BanII GRGCYC 1 cut(s) 145
BbsI GAAGAC 2 cut(s) 26, 186
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 4 cut(s) 68, 414, 481, 493
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 344
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 428
BfoI RGCGCY 1 cut(s) 405
BisI GCNGC 4 cut(s) 82, 428, 495, 507
BlsI GCNGC 4 cut(s) 83, 429, 496, 508
Bme1390I CCNGG 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 1 cut(s) 518
BmtI GCTAGC 1 cut(s) 323
BpiI GAAGAC 2 cut(s) 26, 186
Bpu10I CCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 105, 192
BseNI ACTGG 1 cut(s) 558
BseXI GCAGC 4 cut(s) 68, 414, 481, 493
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 1 cut(s) 347
BsiSI CCGG 2 cut(s) 405, 548
BslFI GGGAC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 564
BspACI CCGC 1 cut(s) 458
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 2 cut(s) 104, 193
BspMAI CTGCAG 1 cut(s) 432
BspOI GCTAGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 572
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 1 cut(s) 558
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 1 cut(s) 564
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 91, 201
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 1 cut(s) 567
BstMBI GATC 1 cut(s) 564
BstMWI GCNNNNNNNGC 3 cut(s) 344, 494, 503
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 428
BstV1I GCAGC 4 cut(s) 68, 414, 481, 493
BstV2I GAAGAC 2 cut(s) 26, 186
BsuRI GGCC 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 321
CfoI GCGC 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 404
DdeI CTNAG 2 cut(s) 91, 201
DpnI GATC 1 cut(s) 566
DpnII GATC 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 309
FaiI YATR 8 cut(s) 222, 279, 330, 371, 385, 390, 490, 492
FaqI GGGAC 1 cut(s) 487
FauI CCCGC 1 cut(s) 451
FauNDI CATATG 1 cut(s) 490
Fnu4HI GCNGC 4 cut(s) 82, 428, 495, 507
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 4 cut(s) 82, 428, 495, 507
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 403
GluI GCNGC 4 cut(s) 82, 428, 495, 507
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 1 cut(s) 347
HapII CCGG 2 cut(s) 405, 548
HhaI GCGC 1 cut(s) 404
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HinfI GANTC 2 cut(s) 135, 441
HpaII CCGG 2 cut(s) 405, 548
HphI GGTGA 2 cut(s) 202, 311
Hpy188I TCNGA 4 cut(s) 134, 140, 569, 581
Hpy188III TCNNGA 2 cut(s) 52, 227
HpyAV CCTTC 3 cut(s) 33, 260, 427
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4V TGCA 3 cut(s) 430, 497, 509
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 494, 503
HpyF3I CTNAG 2 cut(s) 91, 201
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 1 cut(s) 564
LpnPI CCDG 7 cut(s) 219, 329, 356, 404, 418, 561, 571
Lsp1109I GCAGC 4 cut(s) 68, 414, 481, 493
LweI GCATC 1 cut(s) 518
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 12, 110
MalI GATC 1 cut(s) 566
MboI GATC 1 cut(s) 564
MboII GAAGA 9 cut(s) 26, 67, 171, 177, 180, 186, 256, 293, 298
MhlI GDGCHC 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 2 cut(s) 314, 516
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 4 cut(s) 418, 542, 554, 559
MnlI CCTC 9 cut(s) 49, 100, 155, 196, 256, 326, 361, 448, 537
Mox20I TGGCCA 1 cut(s) 347
MroXI GAANNNNTTC 2 cut(s) 128, 248
MscI TGGCCA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 405, 548
MspR9I CCNGG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 344, 494, 503
NdeI CATATG 1 cut(s) 490
NdeII GATC 1 cut(s) 564
NheI GCTAGC 1 cut(s) 319
OliI CACNNNNGTG 1 cut(s) 548
PdmI GAANNNNTTC 2 cut(s) 128, 248
PfeI GAWTC 1 cut(s) 441
PkrI GCNGC 4 cut(s) 83, 429, 496, 508
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PstI CTGCAG 1 cut(s) 432
PvuII CAGCTG 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 548
SatI GCNGC 4 cut(s) 82, 428, 495, 507
Sau3AI GATC 1 cut(s) 564
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 1 cut(s) 145
SetI ASST 8 cut(s) 130, 202, 235, 325, 345, 353, 438, 524
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 428
SgrAI CRCCGGYG 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 2 cut(s) 314, 516
SsiI CCGC 1 cut(s) 458
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 535
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 314, 516
TfiI GAWTC 1 cut(s) 441
TseI GCWGC 4 cut(s) 81, 427, 494, 506
TspDTI ATGAA 3 cut(s) 171, 294, 318
TspGWI ACGGA 1 cut(s) 173
XmnI GAANNNNTTC 2 cut(s) 128, 248
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.