AT2G27310

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011837
Physical Location & Seq
Reverse (-)
11683772 .. 11685342
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27310.1

Sequence Viewer

Length: 1014 bp
ATGGCAACCGTCGATGTCATCAACGGTGATTCAATCTCAACTCTTCATTCTGACATAATCCAAACCCAAATCTTGACCCGACTCGATGGTCCGACGCTAGCCTCCACCGCAACAACCTCTTCTTACCTCCAAACTCTATGCACGGAAGAGAAACTCTGGCAAGAACTCTCCATCGACACGTGGCCTTCGATCAATGATCCACGTGTTGTCCAAGCTATCTCCTCTTTCCCTTCCGGTTACCGTTCTTTCTTTGCTGACTCGTACCCGTTCACTGAACACACGTGGCAGTCTGAAAAACATGATCCACCGACGGGATTAATCTCAGCCGTTGATTTATACTACAGAGGAGAGATTATATACTCGAAGGTACAAGAGATGGAAACAGAGAAAGGTAAATCAGGATGGTTCTTGTCATCACCGTTTCGGGTCGATATACTCGACCCGAAAGAGTCGGTCCAAACCCGGATTCGATATCCGGGTGGGGACTACGAAGCGTGGGTGAAAGATATGGAAGAGAGCATGAAACTTAATTGGATACTAATCGATCCGATCAAGAAACGAGCGGCGAATATATCTAGTCGAAAGGCGGTGTCGGCGCGGCGGAACTGGCTAACGGGGGATTTAGAAATACGGTTTTCAACGGTAGTGACGGCGGAGGCGGCGGAAGTGGCGGCGGTTGTGTCATGCGGGTCAGCGGAAGCGTGGAAAGAGGTGGATGAGGAAGTGGGAGGAGAAATACACGTGAGGGACGTGAGGCTACAAGTAGAGGACATAGAAGGAAAATGTATGAAAGGTAGGGATAGTTTGGTAATTTTACAAGGGTTGTTAGATGGAAAGAGATCGTGTAAAGATGATGAAGAGAGAAGAGCTAAAGAAAGGTATGAAGAATACGTGCGAATGAAGATACAATGGAGAGAGAATAAAGAGAGGAGAGAAAAAGCTCAAGACACAATTTGTATGATCTTTGGGTTCTCTATGTTTGTGCTTTTGTGGAGTTTTATTTTGTTAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

337

Amino Acids

38.6

Weight (kDa)

5.17

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27310
fragaria_vesca FvH4_3g25740
malus_domestica MD03G1150200.v1.1 MD03G1150400.v1.1 MD11G1169600.v1.1 MD11G1169800.v1.1
prunus_persica Prupe.6G137300_v2.0.a1
pyrus_communis pycom03g10430 pycom11g14220
rosa_chinensis RchiOBHm_Chr5g0046101
rosa_laevigata RLG00000034384
rosa_multiflora Rmu_sc0001035.1_g000053
rosa_roxburghii Rroxscaffold_1G00035360
rosa_rugosa Rorug05G0225800
rosa_samantha Rh5AG306500 Rh5BG314900 Rh5CG341200 Rh5DG325100
rosa_wichuraiana Rw5G028660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 87
AccBSI CCGCTC 1 cut(s) 563
AccII CGCG 1 cut(s) 598
AclWI GGATC 3 cut(s) 191, 296, 539
AcvI CACGTG 4 cut(s) 180, 203, 282, 742
AfaI GTAC 2 cut(s) 263, 369
AfiI CCNNNNNNNGG 1 cut(s) 311
AflIII ACRYGT 4 cut(s) 177, 202, 279, 739
AgsI TTSAA 2 cut(s) 33, 639
AjiI CACGTC 1 cut(s) 751
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 3 cut(s) 215, 869, 941
AluI AGCT 3 cut(s) 215, 869, 941
AlwI GGATC 3 cut(s) 191, 296, 539
AoxI GGCC 1 cut(s) 182
AseI ATTAAT 1 cut(s) 317
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 89, 454
AsuC2I CCSGG 2 cut(s) 463, 477
AsuHPI GGTGA 3 cut(s) 38, 408, 511
AsuNHI GCTAGC 1 cut(s) 97
AvaII GGWCC 2 cut(s) 89, 454
BbrPI CACGTG 4 cut(s) 180, 203, 282, 742
BccI CCATC 5 cut(s) 80, 179, 370, 396, 824
BceAI ACGGC 2 cut(s) 311, 666
BciVI GTATCC 1 cut(s) 528
BcnI CCSGG 2 cut(s) 463, 477
BfaI CTAG 2 cut(s) 98, 576
BfmI CTRYAG 1 cut(s) 340
BfuI GTATCC 1 cut(s) 528
BisI GCNGC 4 cut(s) 564, 599, 660, 672
BlsI GCNGC 4 cut(s) 565, 600, 661, 673
Bme1390I CCNGG 2 cut(s) 463, 477
Bme18I GGWCC 2 cut(s) 89, 454
BmgBI CACGTC 1 cut(s) 751
BmgT120I GGNCC 2 cut(s) 89, 454
BmrFI CCNGG 2 cut(s) 463, 477
BmtI GCTAGC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 927
BpuMI CCSGG 2 cut(s) 463, 477
Bsa29I ATCGAT 1 cut(s) 543
BsaAI YACGTR 5 cut(s) 180, 203, 282, 742, 892
BsaBI GATNNNNATC 1 cut(s) 539
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 611
Bse8I GATNNNNATC 1 cut(s) 539
BseCI ATCGAT 1 cut(s) 543
BseGI GGATG 2 cut(s) 407, 721
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 611
BseRI GAGGAG 4 cut(s) 211, 360, 744, 943
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 1 cut(s) 184
BshVI ATCGAT 1 cut(s) 543
BsiSI CCGG 3 cut(s) 234, 463, 476
BslFI GGGAC 2 cut(s) 497, 761
BslI CCNNNNNNNGG 1 cut(s) 311
BsmFI GGGAC 2 cut(s) 497, 761
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 7 cut(s) 189, 196, 301, 544, 549, 839, 960
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 335
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 1 cut(s) 598
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 3 cut(s) 191, 296, 539
BspQI GCTCTTC 1 cut(s) 859
BsrBI CCGCTC 1 cut(s) 563
BsrI ACTGG 1 cut(s) 611
BssMI GATC 7 cut(s) 189, 196, 301, 544, 549, 839, 960
Bst4CI ACNGT 6 cut(s) 10, 26, 242, 420, 633, 643
Bst6I CTCTTC 6 cut(s) 48, 124, 141, 507, 852, 859
BstBAI YACGTR 5 cut(s) 180, 203, 282, 742, 892
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 322
BstEII GGTNACC 1 cut(s) 236
BstF5I GGATG 2 cut(s) 407, 721
BstFNI CGCG 1 cut(s) 598
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 7 cut(s) 192, 199, 304, 547, 552, 842, 963
BstMBI GATC 7 cut(s) 189, 196, 301, 544, 549, 839, 960
BstMWI GCNNNNNNNGC 5 cut(s) 107, 593, 607, 659, 668
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 461, 475
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 1 cut(s) 598
Bsu15I ATCGAT 1 cut(s) 543
BsuI GTATCC 1 cut(s) 528
BsuRI GGCC 1 cut(s) 184
BsuTUI ATCGAT 1 cut(s) 543
BtrI CACGTC 1 cut(s) 751
BtsCI GGATG 2 cut(s) 407, 721
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 89, 454
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 262, 368
CviAII CATG 3 cut(s) 299, 520, 684
CviJI RGCY 8 cut(s) 101, 184, 215, 326, 610, 757, 869, 941
CviKI_1 RGCY 8 cut(s) 101, 184, 215, 326, 610, 757, 869, 941
CviQI GTAC 2 cut(s) 262, 368
DdeI CTNAG 1 cut(s) 322
DpnI GATC 7 cut(s) 191, 198, 303, 546, 551, 841, 962
DpnII GATC 7 cut(s) 189, 196, 301, 544, 549, 839, 960
DrdI GACNNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 87
Eam1104I CTCTTC 6 cut(s) 48, 124, 141, 507, 852, 859
EarI CTCTTC 6 cut(s) 48, 124, 141, 507, 852, 859
EciI GGCGGA 3 cut(s) 616, 668, 677
Eco32I GATATC 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 89, 454
Eco72I CACGTG 4 cut(s) 180, 203, 282, 742
Eco91I GGTNACC 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 236
EcoRV GATATC 1 cut(s) 473
FaeI CATG 3 cut(s) 302, 523, 687
FaqI GGGAC 2 cut(s) 497, 761
FatI CATG 3 cut(s) 298, 519, 683
FauI CCCGC 1 cut(s) 680
Fnu4HI GCNGC 4 cut(s) 564, 599, 660, 672
FokI GGATG 2 cut(s) 414, 728
Fsp4HI GCNGC 4 cut(s) 564, 599, 660, 672
FspBI CTAG 2 cut(s) 98, 576
GlaI GCGC 1 cut(s) 597
GluI GCNGC 4 cut(s) 564, 599, 660, 672
HaeIII GGCC 1 cut(s) 184
HapII CCGG 3 cut(s) 234, 463, 476
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 598
Hin1II CATG 3 cut(s) 302, 523, 687
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HinfI GANTC 5 cut(s) 29, 81, 257, 449, 466
HpaII CCGG 3 cut(s) 234, 463, 476
HphI GGTGA 3 cut(s) 38, 408, 511
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 4 cut(s) 52, 93, 292, 549
Hpy188III TCNNGA 4 cut(s) 73, 399, 553, 944
Hpy8I GTNNAC 1 cut(s) 270
Hpy99I CGWCG 3 cut(s) 14, 97, 313
HpyAV CCTTC 4 cut(s) 195, 240, 358, 770
HpyCH4III ACNGT 6 cut(s) 10, 26, 242, 420, 633, 643
HpyCH4IV ACGT 6 cut(s) 179, 202, 281, 741, 750, 891
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 593, 607, 659, 668
HpyF3I CTNAG 1 cut(s) 322
HpySE526I ACGT 6 cut(s) 179, 202, 281, 741, 750, 891
Hsp92II CATG 3 cut(s) 302, 523, 687
HspAI GCGC 1 cut(s) 596
Kzo9I GATC 7 cut(s) 189, 196, 301, 544, 549, 839, 960
LguI GCTCTTC 1 cut(s) 859
LpnPI CCDG 6 cut(s) 142, 247, 384, 476, 489, 592
MaeI CTAG 2 cut(s) 98, 576
MaeII ACGT 6 cut(s) 179, 202, 281, 741, 750, 891
MaeIII GTNAC 2 cut(s) 236, 646
MalI GATC 7 cut(s) 191, 198, 303, 546, 551, 841, 962
MbiI CCGCTC 1 cut(s) 563
MboI GATC 7 cut(s) 189, 196, 301, 544, 549, 839, 960
MboII GAAGA 8 cut(s) 35, 111, 158, 524, 869, 876, 896, 913
MluCI AATT 3 cut(s) 529, 810, 951
MlyI GAGTC 3 cut(s) 75, 251, 458
MmeI TCCRAC 1 cut(s) 116
MseI TTAA 3 cut(s) 317, 528, 1007
MspA1I CMGCKG 1 cut(s) 695
MspI CCGG 3 cut(s) 234, 463, 476
MspR9I CCNGG 2 cut(s) 463, 477
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 5 cut(s) 107, 593, 607, 659, 668
NciI CCSGG 2 cut(s) 463, 477
NdeII GATC 7 cut(s) 189, 196, 301, 544, 549, 839, 960
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 3 cut(s) 302, 523, 687
NmuCI GTSAC 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 859
PcsI WCGNNNNNNNCGW 3 cut(s) 185, 435, 747
PfeI GAWTC 2 cut(s) 29, 466
PkrI GCNGC 4 cut(s) 565, 600, 661, 673
PleI GAGTC 3 cut(s) 75, 251, 457
PmaCI CACGTG 4 cut(s) 180, 203, 282, 742
PmlI CACGTG 4 cut(s) 180, 203, 282, 742
PpsI GAGTC 3 cut(s) 75, 251, 457
Ppu21I YACGTR 5 cut(s) 180, 203, 282, 742, 892
PshBI ATTAAT 1 cut(s) 317
PspCI CACGTG 4 cut(s) 180, 203, 282, 742
PspEI GGTNACC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 89, 454
RsaI GTAC 2 cut(s) 263, 369
RsaNI GTAC 2 cut(s) 262, 368
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 3 cut(s) 317, 528, 1007
SatI GCNGC 4 cut(s) 564, 599, 660, 672
Sau3AI GATC 7 cut(s) 189, 196, 301, 544, 549, 839, 960
Sau96I GGNCC 2 cut(s) 89, 454
SchI GAGTC 3 cut(s) 75, 251, 458
ScrFI CCNGG 2 cut(s) 463, 477
SfcI CTRYAG 1 cut(s) 340
SinI GGWCC 2 cut(s) 89, 454
SmlI CTYRAG 1 cut(s) 942
SmoI CTYRAG 1 cut(s) 942
Sse9I AATT 3 cut(s) 529, 810, 951
SspMI CTAG 2 cut(s) 98, 576
StyD4I CCNGG 2 cut(s) 461, 475
TaaI ACNGT 6 cut(s) 10, 26, 242, 420, 633, 643
TaiI ACGT 6 cut(s) 182, 205, 284, 744, 753, 894
TaqII GACCGA 1 cut(s) 442
TasI AATT 3 cut(s) 529, 810, 951
TauI GCSGC 4 cut(s) 566, 601, 662, 674
TfiI GAWTC 2 cut(s) 29, 466
Tru1I TTAA 3 cut(s) 317, 528, 1007
Tru9I TTAA 3 cut(s) 317, 528, 1007
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 646
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 6 cut(s) 35, 536, 803, 870, 897, 914
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 89, 454
VspI ATTAAT 1 cut(s) 317
XspI CTAG 2 cut(s) 98, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.