MD11G1169800.v1.1

F-box protein At2g27310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011837
Physical Location & Seq
Forward (+)
18235884 .. 18236897
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1169800.v1.1.491

Sequence Viewer

Length: 1014 bp
ATGAGCTTTTCAGCTGTAACAACATTGGCCGTCGATCAGGGCGACCGGCCTTCAATCTCCGTCGTCCATCCCGACATTATCACGGCTCACATCCTCACCCGCCTCGACGGCCAGACCTTGGCTGCAGCCTCCTGCGCTTCGTCCGAATTACACAGCTTCTCCGCCAAAGAAAAACTCTGGCGGGACGCCAGCATCGCCACATGGCCTTCCATAACCGATCCACGAGTCAACGATCTCATTTCCACTTTCCCTGGCGGTCACCGCTTTTTCTTCTCCGACTCTTTCCCGCTCCTCGACCACTCGCCCTCCCAATTCAATTTCAGCCCTTCGTCCCCCACCGCGGAGTTAATCTCGGCCGTCGATATTTTCTACAAAGACCAGCTCATTTTCTCTAAGGTTCAGGAGTCCGAGACCGAATCCGGGTGGTTCCTCTGCTCGCCTTTCCGGGTCGACTTACTTGACCGGAAAGAAACCGTCCCGACACCAATCCAACATGTCGGGGAAGACCAGAAGTCGTTGAAGCACTTGGAGGACAACCTGAGCCTGAGCTGGATCGTGATCGACCCCACCCGGAAAAGGGCAGCAAATTTGTCGAGCCGGACGGCAGTGACGGTGCAGCGTCACTGGCTGACAGGGGAGATACAGCTGCGGTTCGCGACGATATTGGCGGGGGAGAAGAAGGGGGAGTATGTGCAGTGCGGGATGGTGGTGACTTGCAAGAGGAGTGGGAGTGAAGGAAGGGAGCTGCACGTGAGGGAGGTGAGCATGCAGATGGAGGGAATGGAGGGGAATCATTTGAACGGGAGGGAGAGTTTGGTCATATTGCAGAGGGCGATCGAGGGAGGGAAGAGGAGGAAGGAGGTAAAGGGGAAGGCAAAGTATGAAGAGTACTTGGAGATGAAGAGAGAGAGGAGAGAGAGAAAGGAGAGGAGAGAGAAGGCTTTGGACATGATCTGCATTGCTGCTGGGGTTACTATTTTCATGGCGTTTTGGTCATTTGTCTTGTTCAGATAG

Protein Analysis

338

Amino Acids

38.12

Weight (kDa)

7.71

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27310
fragaria_vesca FvH4_3g25740
malus_domestica MD03G1150200.v1.1 MD03G1150400.v1.1 MD11G1169600.v1.1 MD11G1169800.v1.1
prunus_persica Prupe.6G137300_v2.0.a1
pyrus_communis pycom03g10430 pycom11g14220
rosa_chinensis RchiOBHm_Chr5g0046101
rosa_laevigata RLG00000034384
rosa_multiflora Rmu_sc0001035.1_g000053
rosa_roxburghii Rroxscaffold_1G00035360
rosa_rugosa Rorug05G0225800
rosa_samantha Rh5AG306500 Rh5BG314900 Rh5CG341200 Rh5DG325100
rosa_wichuraiana Rw5G028660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 450
AccII CGCG 2 cut(s) 341, 656
AclWI GGATC 2 cut(s) 212, 560
AcoI YGGCCR 3 cut(s) 27, 109, 354
AcsI RAATTY 1 cut(s) 586
AcvI CACGTG 1 cut(s) 751
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 890
AfiI CCNNNNNNNGG 5 cut(s) 118, 340, 420, 576, 577
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 4 cut(s) 54, 316, 520, 799
AhdI GACNNNNNGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 7 cut(s) 6, 14, 156, 382, 549, 646, 745
AluI AGCT 7 cut(s) 6, 14, 156, 382, 549, 646, 745
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 2 cut(s) 212, 560
AoxI GGCC 5 cut(s) 27, 47, 109, 203, 354
ApeKI GCWGC 7 cut(s) 122, 125, 581, 616, 646, 745, 962
ApoI RAATTY 1 cut(s) 586
AspLEI GCGC 1 cut(s) 137
AsuC2I CCSGG 3 cut(s) 421, 446, 571
AsuHPI GGTGA 4 cut(s) 88, 251, 721, 772
BauI CACGAG 1 cut(s) 222
BbrPI CACGTG 1 cut(s) 751
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 7 cut(s) 109, 137, 593, 628, 633, 732, 949
BccI CCATC 3 cut(s) 75, 697, 766
BceAI ACGGC 5 cut(s) 14, 99, 124, 341, 618
BcgI CGANNNNNNTGC 2 cut(s) 573, 607
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 3 cut(s) 421, 446, 571
BcoDI GTCTC 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 123
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 7 cut(s) 123, 126, 582, 617, 647, 746, 963
BlsI GCNGC 7 cut(s) 124, 127, 583, 618, 648, 747, 964
BmcAI AGTACT 1 cut(s) 890
Bme1390I CCNGG 4 cut(s) 252, 421, 446, 571
BmeRI GACNNNNNGTC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 4 cut(s) 252, 421, 446, 571
BmsI GCATC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 510
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu10I CCTNAGC 2 cut(s) 539, 545
BpuMI CCSGG 3 cut(s) 421, 446, 571
BsaAI YACGTR 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 557
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 117, 250, 339
BsaWI WCCGGW 1 cut(s) 462
BsaXI ACNNNNNCTCC 8 cut(s) 143, 173, 290, 320, 715, 745, 796, 826
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 340, 420, 576, 577
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 957
Bse8I GATNNNNATC 1 cut(s) 557
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 117, 250, 339
BseGI GGATG 3 cut(s) 67, 90, 708
BseJI GATNNNNATC 1 cut(s) 557
BseLI CCNNNNNNNGG 5 cut(s) 118, 340, 420, 576, 577
BseMI GCAATG 1 cut(s) 957
BseMII CTCAG 2 cut(s) 530, 536
BseNI ACTGG 1 cut(s) 629
BseRI GAGGAG 5 cut(s) 281, 736, 865, 925, 943
BseX3I CGGCCG 1 cut(s) 354
BseXI GCAGC 7 cut(s) 109, 137, 593, 628, 633, 732, 949
BseYI CCCAGC 1 cut(s) 965
BsgI GTGCAG 3 cut(s) 635, 713, 731
Bsh1236I CGCG 2 cut(s) 341, 656
Bsh1285I CGRYCG 3 cut(s) 46, 357, 837
BshFI GGCC 5 cut(s) 29, 49, 111, 205, 356
BsiEI CGRYCG 3 cut(s) 46, 357, 837
BsiSI CCGG 6 cut(s) 46, 420, 445, 463, 571, 598
BslFI GGGAC 3 cut(s) 197, 316, 461
BslI CCNNNNNNNGG 5 cut(s) 118, 340, 420, 576, 577
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 3 cut(s) 197, 316, 461
BsnI GGCC 5 cut(s) 29, 49, 111, 205, 356
Bso31I GGTCTC 1 cut(s) 404
Bsp143I GATC 7 cut(s) 34, 217, 232, 552, 558, 834, 951
Bsp68I TCGCGA 1 cut(s) 656
BspANI GGCC 5 cut(s) 29, 49, 111, 205, 356
BspCNI CTCAG 2 cut(s) 531, 537
BspFNI CGCG 2 cut(s) 341, 656
BspLI GGNNCC 1 cut(s) 428
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 2 cut(s) 212, 560
BspTNI GGTCTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 957
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 3 cut(s) 117, 250, 339
BssMI GATC 7 cut(s) 34, 217, 232, 552, 558, 834, 951
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 475, 613
Bst6I CTCTTC 3 cut(s) 842, 879, 896
BstACI GRCGYC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 751
BstC8I GCNNGC 3 cut(s) 190, 437, 767
BstDEI CTNAG 3 cut(s) 393, 539, 545
BstDSI CCRYGG 1 cut(s) 339
BstEII GGTNACC 1 cut(s) 257
BstF5I GGATG 3 cut(s) 67, 90, 708
BstFNI CGCG 2 cut(s) 341, 656
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 7 cut(s) 37, 220, 235, 555, 561, 837, 954
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 7 cut(s) 34, 217, 232, 552, 558, 834, 951
BstMCI CGRYCG 3 cut(s) 46, 357, 837
BstMWI GCNNNNNNNGC 5 cut(s) 108, 134, 194, 261, 625
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 2 cut(s) 497, 769
BstPI GGTNACC 1 cut(s) 257
BstSCI CCNGG 4 cut(s) 250, 419, 444, 569
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 2 cut(s) 341, 656
BstV1I GCAGC 7 cut(s) 109, 137, 593, 628, 633, 732, 949
BstV2I GAAGAC 1 cut(s) 510
BstZI CGGCCG 1 cut(s) 354
BsuRI GGCC 5 cut(s) 29, 49, 111, 205, 356
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 3 cut(s) 67, 90, 708
BtsI GCAGTG 2 cut(s) 612, 701
BtsIMutI CAGTG 3 cut(s) 612, 622, 701
BtuMI TCGCGA 1 cut(s) 656
Cac8I GCNNGC 3 cut(s) 190, 437, 767
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 45
Cfr42I CCGCGG 1 cut(s) 342
CseI GACGC 2 cut(s) 194, 608
Csp6I GTAC 1 cut(s) 889
CspCI CAANNNNNGTGG 2 cut(s) 706, 741
CviAII CATG 5 cut(s) 201, 494, 766, 949, 982
CviQI GTAC 1 cut(s) 889
DdeI CTNAG 3 cut(s) 393, 539, 545
DpnI GATC 7 cut(s) 36, 219, 234, 554, 560, 836, 953
DpnII GATC 7 cut(s) 34, 217, 232, 552, 558, 834, 951
DriI GACNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 3 cut(s) 27, 109, 354
EagI CGGCCG 1 cut(s) 354
Eam1104I CTCTTC 3 cut(s) 842, 879, 896
Eam1105I GACNNNNNGTC 1 cut(s) 511
EarI CTCTTC 3 cut(s) 842, 879, 896
EciI GGCGGA 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 404
Eco52I CGGCCG 1 cut(s) 354
Eco72I CACGTG 1 cut(s) 751
Eco91I GGTNACC 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 5 cut(s) 204, 497, 769, 952, 985
FaiI YATR 9 cut(s) 202, 212, 495, 690, 767, 821, 882, 950, 983
FaqI GGGAC 3 cut(s) 197, 316, 461
FatI CATG 5 cut(s) 200, 493, 765, 948, 981
FauI CCCGC 5 cut(s) 107, 174, 294, 661, 692
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 7 cut(s) 123, 126, 582, 617, 647, 746, 963
FokI GGATG 3 cut(s) 54, 77, 715
Fsp4HI GCNGC 7 cut(s) 123, 126, 582, 617, 647, 746, 963
GlaI GCGC 1 cut(s) 136
GluI GCNGC 7 cut(s) 123, 126, 582, 617, 647, 746, 963
GsaI CCCAGC 1 cut(s) 969
HaeIII GGCC 5 cut(s) 29, 49, 111, 205, 356
HapII CCGG 6 cut(s) 46, 420, 445, 463, 571, 598
HgaI GACGC 2 cut(s) 194, 608
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 5 cut(s) 204, 497, 769, 952, 985
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 229, 451
HindII GTYRAC 2 cut(s) 229, 451
HinfI GANTC 5 cut(s) 225, 278, 404, 416, 790
HpaII CCGG 6 cut(s) 46, 420, 445, 463, 571, 598
HphI GGTGA 4 cut(s) 88, 251, 721, 772
Hpy166II GTNNAC 2 cut(s) 229, 451
Hpy188I TCNGA 4 cut(s) 145, 277, 409, 1010
Hpy188III TCNNGA 5 cut(s) 71, 401, 478, 556, 655
Hpy8I GTNNAC 2 cut(s) 229, 451
Hpy99I CGWCG 5 cut(s) 35, 65, 110, 362, 661
HpyAV CCTTC 9 cut(s) 60, 216, 336, 673, 728, 732, 850, 865, 931
HpyCH4III ACNGT 2 cut(s) 475, 613
HpyCH4IV ACGT 1 cut(s) 750
HpyCH4V TGCA 8 cut(s) 125, 616, 694, 717, 748, 769, 826, 957
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 134, 194, 261, 625
HpyF3I CTNAG 3 cut(s) 393, 539, 545
HpySE526I ACGT 1 cut(s) 750
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 5 cut(s) 204, 497, 769, 952, 985
HspAI GCGC 1 cut(s) 135
KspI CCGCGG 1 cut(s) 342
Kzo9I GATC 7 cut(s) 34, 217, 232, 552, 558, 834, 951
LmnI GCTCC 2 cut(s) 294, 742
Lsp1109I GCAGC 7 cut(s) 109, 137, 593, 628, 633, 732, 949
LweI GCATC 1 cut(s) 201
MaeII ACGT 1 cut(s) 750
MaeIII GTNAC 6 cut(s) 16, 257, 607, 620, 709, 970
MalI GATC 7 cut(s) 36, 219, 234, 554, 560, 836, 953
MbiI CCGCTC 1 cut(s) 289
MboI GATC 7 cut(s) 34, 217, 232, 552, 558, 834, 951
MboII GAAGA 6 cut(s) 262, 515, 688, 859, 896, 913
MluCI AATT 4 cut(s) 146, 311, 316, 586
MlyI GAGTC 3 cut(s) 234, 272, 413
MmeI TCCRAC 2 cut(s) 300, 514
MseI TTAA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 770
MspA1I CMGCKG 3 cut(s) 14, 341, 646
MspI CCGG 6 cut(s) 46, 420, 445, 463, 571, 598
MspR9I CCNGG 4 cut(s) 252, 421, 446, 571
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 2 cut(s) 341, 656
MwoI GCNNNNNNNGC 5 cut(s) 108, 134, 194, 261, 625
NciI CCSGG 3 cut(s) 421, 446, 571
NdeII GATC 7 cut(s) 34, 217, 232, 552, 558, 834, 951
NlaIII CATG 5 cut(s) 204, 497, 769, 952, 985
NlaIV GGNNCC 1 cut(s) 428
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 4 cut(s) 257, 607, 620, 709
NruI TCGCGA 1 cut(s) 656
NspI RCATGY 2 cut(s) 497, 769
PaeI GCATGC 1 cut(s) 769
PciI ACATGT 1 cut(s) 493
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 69
PfeI GAWTC 2 cut(s) 416, 790
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 7 cut(s) 124, 127, 583, 618, 648, 747, 964
Ple19I CGATCG 1 cut(s) 837
PleI GAGTC 3 cut(s) 233, 272, 412
PmaCI CACGTG 1 cut(s) 751
PmlI CACGTG 1 cut(s) 751
PpsI GAGTC 3 cut(s) 233, 272, 412
Ppu21I YACGTR 1 cut(s) 751
PscI ACATGT 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 250
PspCI CACGTG 1 cut(s) 751
PspEI GGTNACC 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 428
PstI CTGCAG 1 cut(s) 127
PvuI CGATCG 1 cut(s) 837
PvuII CAGCTG 2 cut(s) 14, 646
RruI TCGCGA 1 cut(s) 656
RsaI GTAC 1 cut(s) 890
RsaNI GTAC 1 cut(s) 889
RseI CAYNNNNRTG 1 cut(s) 770
SacII CCGCGG 1 cut(s) 342
SalI GTCGAC 1 cut(s) 449
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 7 cut(s) 123, 126, 582, 617, 647, 746, 963
Sau3AI GATC 7 cut(s) 34, 217, 232, 552, 558, 834, 951
ScaI AGTACT 1 cut(s) 890
SchI GAGTC 3 cut(s) 234, 272, 413
ScrFI CCNGG 4 cut(s) 252, 421, 446, 571
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 123
Sfr303I CCGCGG 1 cut(s) 342
SgrBI CCGCGG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 770
SphI GCATGC 1 cut(s) 769
Sse9I AATT 4 cut(s) 146, 311, 316, 586
StyD4I CCNGG 4 cut(s) 250, 419, 444, 569
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 475, 613
TaiI ACGT 1 cut(s) 753
TaqI TCGA 8 cut(s) 33, 105, 294, 360, 450, 561, 593, 837
TaqII GACCGA 1 cut(s) 428
TasI AATT 4 cut(s) 146, 311, 316, 586
TatI WGTACW 1 cut(s) 888
TfiI GAWTC 2 cut(s) 416, 790
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 3 cut(s) 612, 629, 701
TseFI GTSAC 4 cut(s) 257, 607, 620, 709
TseI GCWGC 7 cut(s) 122, 125, 581, 616, 646, 745, 962
Tsp45I GTSAC 4 cut(s) 257, 607, 620, 709
TspDTI ATGAA 3 cut(s) 897, 914, 970
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 3 cut(s) 612, 629, 701
Van91I CCANNNNNTGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 586
XceI RCATGY 2 cut(s) 497, 769
XmiI GTMKAC 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.