Prupe.6G137300_v2.0.a1

F-box protein At2g27310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011837
Physical Location & Seq
Forward (+)
11126256 .. 11127683
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G137300.1

Sequence Viewer

Length: 1011 bp
ATGGGTTTTTCTGCTACATCACCCACCGTCGATCAGGGCGACGGCGCTTCGATCTCCGCCGTCCATCCCGACATAATCATGGCCCACATCCTCACCCGCCTCGACGGCCAGACCTTGGCCTCCGCCTCCTGCGCATCCTCCCAATTACACGCCTTCTCCACAGAAGGAAAACTCTGGCGGGACATCTGCTCCGCCACGTGGCCTTCCGTCGCCGATCCACGTGTCGACGACCTCATTTCCACTTTCCCAGCCGGTCACCGCTCGTTCTTCTCCGACTCTTTCCCGCTTCTCGACAACTTTCCCTCCCGATTCGATCTCAGCCGTCCGTCTTCACCTCCCACCACGGAGCTAATCTCCGCCGTCGATATCTTTTACAAAGACCAGCTGATTTTCTCCAAGGTTCAGGAGTCCGAGACGGAATCCGGTTGGTTCCTCTGCTCGCCTTTCCGGGTTGACTTACTTGACCCGAAAGAAACAGTTCCGACACCAATCCGCCACGTCGGAGAAGACCAGGCGTCGCTGAAGCAATTGGAGGAGAACTTGAGTTTGAGCTGGATCGTGATCGACCCGACCCGGAAGCGGGCGGCGAATTTTTCGAGTCGGAGGGCGGTTACGGTGCAGCGGCACTGGTTGACCGGGGAGATACAGTTGCGGTTCGCGACGATTTTGGCTGGGGAGAAGAGAGGGGAGTTCGTGCAGTGCGGGATGGTGGTCACGTGCAATTGGAGCGAAGGCGGGGAGCTGCACGTGAGGGAGGTGAGCATGCAGGTGGAGGGCATGGAGGGGAATCATTTGAACGGGAAGGAGAGTTTGGTAATTTTGGAGAGGGCGATCGAGGGAGGGGAGAGGAGGAAGGAGGTGAAGGGGAAGGGGAGATTTGAGGAGTATTTGGAGATGAAGAGAGAGAGAAGAGAGAGAAAGGAGAGGAGAGAGAAGACTTTGGACATGATATGCATTGCCACTGGGGTTACTATTTTCTTGACCTTTTGGTCCTTCGTCTTCTTCAGATAG

Protein Analysis

337

Amino Acids

37.92

Weight (kDa)

5.84

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27310
fragaria_vesca FvH4_3g25740
malus_domestica MD03G1150200.v1.1 MD03G1150400.v1.1 MD11G1169600.v1.1 MD11G1169800.v1.1
prunus_persica Prupe.6G137300_v2.0.a1
pyrus_communis pycom03g10430 pycom11g14220
rosa_chinensis RchiOBHm_Chr5g0046101
rosa_laevigata RLG00000034384
rosa_multiflora Rmu_sc0001035.1_g000053
rosa_roxburghii Rroxscaffold_1G00035360
rosa_rugosa Rorug05G0225800
rosa_samantha Rh5AG306500 Rh5BG314900 Rh5CG341200 Rh5DG325100
rosa_wichuraiana Rw5G028660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 757
AasI GACNNNNNNGTC 1 cut(s) 988
Acc16I TGCGCA 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 757
AccB7I CCANNNNNTGG 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 659
AclWI GGATC 2 cut(s) 209, 563
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 2 cut(s) 542, 988
AcvI CACGTG 4 cut(s) 198, 221, 717, 748
AcyI GRCGYC 1 cut(s) 515
AfiI CCNNNNNNNGG 4 cut(s) 115, 198, 579, 580
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 1 cut(s) 796
AhdI GACNNNNNGTC 1 cut(s) 514
AjiI CACGTC 1 cut(s) 499
AjnI CCWGG 1 cut(s) 510
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 4 cut(s) 349, 385, 552, 742
AluI AGCT 4 cut(s) 349, 385, 552, 742
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 2 cut(s) 209, 563
AoxI GGCC 4 cut(s) 81, 106, 117, 200
ApeKI GCWGC 2 cut(s) 619, 742
ApoI RAATTY 1 cut(s) 589
Asp700I GAANNNNTTC 1 cut(s) 477
AspLEI GCGC 2 cut(s) 47, 134
AspS9I GGNCC 2 cut(s) 82, 990
AsuC2I CCSGG 3 cut(s) 449, 574, 637
AsuHPI GGTGA 6 cut(s) 12, 85, 248, 324, 769, 871
AvaII GGWCC 1 cut(s) 990
BbrPI CACGTG 4 cut(s) 198, 221, 717, 748
BbsI GAAGAC 4 cut(s) 321, 513, 941, 991
BbvI GCAGC 2 cut(s) 631, 729
BccI CCATC 2 cut(s) 72, 700
BceAI ACGGC 5 cut(s) 44, 58, 121, 306, 344
BciT130I CCWGG 1 cut(s) 512
BcnI CCSGG 3 cut(s) 449, 574, 637
BcoDI GTCTC 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 757
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 4 cut(s) 585, 620, 623, 743
BlsI GCNGC 4 cut(s) 586, 621, 624, 744
Bme1390I CCNGG 4 cut(s) 449, 512, 574, 637
Bme18I GGWCC 1 cut(s) 990
BmeRI GACNNNNNGTC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 499
BmgT120I GGNCC 2 cut(s) 82, 990
BmiI GGNNCC 1 cut(s) 431
BmrFI CCNGG 4 cut(s) 449, 512, 574, 637
BmrI ACTGGG 1 cut(s) 972
BmsI GCATC 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 972
BpiI GAAGAC 4 cut(s) 321, 513, 941, 991
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BpuEI CTTGAG 1 cut(s) 562
BpuMI CCSGG 3 cut(s) 449, 574, 637
BsaAI YACGTR 4 cut(s) 198, 221, 717, 748
BsaBI GATNNNNATC 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 515
BsaJI CCNNGG 4 cut(s) 114, 342, 396, 636
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 8 cut(s) 140, 170, 173, 203, 287, 317, 632, 662
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 198, 579, 580
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 632, 967
Bse3DI GCAATG 1 cut(s) 954
Bse8I GATNNNNATC 1 cut(s) 560
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 4 cut(s) 114, 342, 396, 636
BseGI GGATG 4 cut(s) 64, 87, 134, 711
BseJI GATNNNNATC 1 cut(s) 560
BseLI CCNNNNNNNGG 4 cut(s) 115, 198, 579, 580
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 2 cut(s) 632, 967
BseRI GAGGAG 4 cut(s) 548, 862, 896, 940
BseXI GCAGC 2 cut(s) 631, 729
BseYI CCCAGC 2 cut(s) 247, 671
BsgI GTGCAG 3 cut(s) 638, 716, 728
Bsh1236I CGCG 1 cut(s) 659
Bsh1285I CGRYCG 1 cut(s) 834
BshFI GGCC 4 cut(s) 83, 108, 119, 202
BsiEI CGRYCG 1 cut(s) 834
BsiSI CCGG 5 cut(s) 252, 423, 448, 574, 636
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 4 cut(s) 115, 198, 579, 580
BsmAI GTCTC 1 cut(s) 407
BsmBI CGTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 4 cut(s) 83, 108, 119, 202
Bsp143I GATC 7 cut(s) 31, 51, 214, 313, 555, 561, 831
Bsp68I TCGCGA 1 cut(s) 659
BspANI GGCC 4 cut(s) 83, 108, 119, 202
BspCNI CTCAG 1 cut(s) 330
BspFNI CGCG 1 cut(s) 659
BspLI GGNNCC 1 cut(s) 431
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 2 cut(s) 209, 563
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 954
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 2 cut(s) 632, 967
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 4 cut(s) 114, 342, 396, 636
BssMI GATC 7 cut(s) 31, 51, 214, 313, 555, 561, 831
BssNI GRCGYC 1 cut(s) 515
BssT1I CCWWGG 2 cut(s) 114, 396
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 4 cut(s) 28, 478, 616, 648
Bst6I CTCTTC 3 cut(s) 674, 893, 904
BstACI GRCGYC 1 cut(s) 515
BstBAI YACGTR 4 cut(s) 198, 221, 717, 748
BstC8I GCNNGC 3 cut(s) 440, 582, 764
BstDEI CTNAG 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 342
BstEII GGTNACC 1 cut(s) 254
BstF5I GGATG 4 cut(s) 64, 87, 134, 711
BstFNI CGCG 1 cut(s) 659
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 2 cut(s) 47, 134
BstKTI GATC 7 cut(s) 34, 54, 217, 316, 558, 564, 834
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 7 cut(s) 31, 51, 214, 313, 555, 561, 831
BstMCI CGRYCG 1 cut(s) 834
BstMWI GCNNNNNNNGC 3 cut(s) 105, 131, 726
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 1 cut(s) 766
BstPI GGTNACC 1 cut(s) 254
BstSCI CCNGG 4 cut(s) 447, 510, 572, 635
BstUI CGCG 1 cut(s) 659
BstV1I GCAGC 2 cut(s) 631, 729
BstV2I GAAGAC 4 cut(s) 321, 513, 941, 991
BsuRI GGCC 4 cut(s) 83, 108, 119, 202
BtgI CCRYGG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 499
BtsCI GGATG 4 cut(s) 64, 87, 134, 711
BtsI GCAGTG 1 cut(s) 704
BtsIMutI CAGTG 3 cut(s) 625, 704, 960
BtuMI TCGCGA 1 cut(s) 659
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 3 cut(s) 440, 582, 764
CfoI GCGC 2 cut(s) 47, 134
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 82, 990
CseI GACGC 1 cut(s) 504
CviAII CATG 4 cut(s) 79, 763, 778, 946
DdeI CTNAG 1 cut(s) 317
DpnI GATC 7 cut(s) 33, 53, 216, 315, 557, 563, 833
DpnII GATC 7 cut(s) 31, 51, 214, 313, 555, 561, 831
DrdI GACNNNNNNGTC 1 cut(s) 988
DriI GACNNNNNGTC 1 cut(s) 514
DseDI GACNNNNNNGTC 1 cut(s) 988
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 3 cut(s) 674, 893, 904
Eam1105I GACNNNNNGTC 1 cut(s) 514
EarI CTCTTC 3 cut(s) 674, 893, 904
EciI GGCGGA 5 cut(s) 46, 112, 181, 346, 482
Eco130I CCWWGG 2 cut(s) 114, 396
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 990
Eco57I CTGAAG 2 cut(s) 542, 988
Eco72I CACGTG 4 cut(s) 198, 221, 717, 748
Eco91I GGTNACC 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 510
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 2 cut(s) 114, 396
EcoT22I ATGCAT 1 cut(s) 956
ErhI CCWWGG 2 cut(s) 114, 396
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 4 cut(s) 82, 766, 781, 949
FaiI YATR 6 cut(s) 74, 80, 764, 779, 947, 952
FaqI GGGAC 1 cut(s) 194
FatI CATG 4 cut(s) 78, 762, 777, 945
FauI CCCGC 6 cut(s) 104, 171, 291, 573, 695, 728
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 585, 620, 623, 743
FokI GGATG 4 cut(s) 51, 74, 121, 718
Fsp4HI GCNGC 4 cut(s) 585, 620, 623, 743
FspI TGCGCA 1 cut(s) 133
GlaI GCGC 2 cut(s) 46, 133
GluI GCNGC 4 cut(s) 585, 620, 623, 743
GsaI CCCAGC 2 cut(s) 251, 675
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 4 cut(s) 83, 108, 119, 202
HapII CCGG 5 cut(s) 252, 423, 448, 574, 636
HgaI GACGC 1 cut(s) 504
HhaI GCGC 2 cut(s) 47, 134
Hin1I GRCGYC 1 cut(s) 515
Hin1II CATG 4 cut(s) 82, 766, 781, 949
Hin6I GCGC 2 cut(s) 45, 132
HinP1I GCGC 2 cut(s) 45, 132
HincII GTYRAC 3 cut(s) 226, 454, 633
HindII GTYRAC 3 cut(s) 226, 454, 633
HinfI GANTC 6 cut(s) 275, 309, 407, 419, 598, 787
HpaII CCGG 5 cut(s) 252, 423, 448, 574, 636
HphI GGTGA 6 cut(s) 12, 85, 248, 324, 769, 871
Hpy166II GTNNAC 3 cut(s) 226, 454, 633
Hpy188I TCNGA 6 cut(s) 274, 412, 483, 503, 603, 1007
Hpy188III TCNNGA 7 cut(s) 68, 290, 306, 404, 559, 658, 979
Hpy8I GTNNAC 3 cut(s) 226, 454, 633
Hpy99I CGWCG 9 cut(s) 32, 44, 107, 212, 230, 365, 503, 520, 664
HpyAV CCTTC 9 cut(s) 158, 163, 213, 725, 796, 847, 856, 862, 1003
HpyCH4III ACNGT 4 cut(s) 28, 478, 616, 648
HpyCH4IV ACGT 5 cut(s) 197, 220, 498, 716, 747
HpyCH4V TGCA 6 cut(s) 619, 697, 720, 745, 766, 954
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 131, 726
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 5 cut(s) 197, 220, 498, 716, 747
Hsp92I GRCGYC 1 cut(s) 515
Hsp92II CATG 4 cut(s) 82, 766, 781, 949
HspAI GCGC 2 cut(s) 45, 132
Kzo9I GATC 7 cut(s) 31, 51, 214, 313, 555, 561, 831
LmnI GCTCC 4 cut(s) 194, 346, 726, 739
Lsp1109I GCAGC 2 cut(s) 631, 729
LweI GCATC 1 cut(s) 143
MaeII ACGT 5 cut(s) 197, 220, 498, 716, 747
MaeIII GTNAC 4 cut(s) 254, 610, 712, 967
MalI GATC 7 cut(s) 33, 53, 216, 315, 557, 563, 833
MbiI CCGCTC 1 cut(s) 261
MboI GATC 7 cut(s) 31, 51, 214, 313, 555, 561, 831
MboII GAAGA 9 cut(s) 259, 321, 518, 691, 910, 921, 946, 991, 994
MfeI CAATTG 2 cut(s) 527, 721
MluCI AATT 5 cut(s) 143, 527, 589, 721, 816
MlyI GAGTC 3 cut(s) 269, 416, 607
MmeI TCCRAC 4 cut(s) 297, 481, 506, 581
Mph1103I ATGCAT 1 cut(s) 956
MroXI GAANNNNTTC 1 cut(s) 477
MslI CAYNNNNRTG 2 cut(s) 77, 767
MspA1I CMGCKG 2 cut(s) 385, 622
MspI CCGG 5 cut(s) 252, 423, 448, 574, 636
MspR9I CCNGG 4 cut(s) 449, 512, 574, 637
MunI CAATTG 2 cut(s) 527, 721
MvaI CCWGG 1 cut(s) 512
MvnI CGCG 1 cut(s) 659
MwoI GCNNNNNNNGC 3 cut(s) 105, 131, 726
NciI CCSGG 3 cut(s) 449, 574, 637
NdeII GATC 7 cut(s) 31, 51, 214, 313, 555, 561, 831
NlaIII CATG 4 cut(s) 82, 766, 781, 949
NlaIV GGNNCC 1 cut(s) 431
NmuCI GTSAC 2 cut(s) 254, 712
NruI TCGCGA 1 cut(s) 659
NsbI TGCGCA 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 956
NspI RCATGY 1 cut(s) 766
PaeI GCATGC 1 cut(s) 766
PaqCI CACCTGC 1 cut(s) 757
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 3 cut(s) 309, 419, 787
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 4 cut(s) 586, 621, 624, 744
Ple19I CGATCG 1 cut(s) 834
PleI GAGTC 3 cut(s) 269, 415, 606
PmaCI CACGTG 4 cut(s) 198, 221, 717, 748
PmlI CACGTG 4 cut(s) 198, 221, 717, 748
PpsI GAGTC 3 cut(s) 269, 415, 606
Ppu21I YACGTR 4 cut(s) 198, 221, 717, 748
Psp6I CCWGG 1 cut(s) 510
PspCI CACGTG 4 cut(s) 198, 221, 717, 748
PspEI GGTNACC 1 cut(s) 254
PspFI CCCAGC 2 cut(s) 247, 671
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 431
PspPI GGNCC 2 cut(s) 82, 990
PvuI CGATCG 1 cut(s) 834
PvuII CAGCTG 1 cut(s) 385
RruI TCGCGA 1 cut(s) 659
RseI CAYNNNNRTG 2 cut(s) 77, 767
SalI GTCGAC 1 cut(s) 224
SatI GCNGC 4 cut(s) 585, 620, 623, 743
Sau3AI GATC 7 cut(s) 31, 51, 214, 313, 555, 561, 831
Sau96I GGNCC 2 cut(s) 82, 990
SchI GAGTC 3 cut(s) 269, 416, 607
ScrFI CCNGG 4 cut(s) 449, 512, 574, 637
SfaNI GCATC 1 cut(s) 143
SinI GGWCC 1 cut(s) 990
SmiMI CAYNNNNRTG 2 cut(s) 77, 767
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
SphI GCATGC 1 cut(s) 766
Sse9I AATT 5 cut(s) 143, 527, 589, 721, 816
StyD4I CCNGG 4 cut(s) 447, 510, 572, 635
StyI CCWWGG 2 cut(s) 114, 396
TaaI ACNGT 4 cut(s) 28, 478, 616, 648
TaiI ACGT 5 cut(s) 200, 223, 501, 719, 750
TasI AATT 5 cut(s) 143, 527, 589, 721, 816
TauI GCSGC 2 cut(s) 587, 625
TfiI GAWTC 3 cut(s) 309, 419, 787
TscAI CASTG 3 cut(s) 632, 704, 967
TseFI GTSAC 2 cut(s) 254, 712
TseI GCWGC 2 cut(s) 619, 742
Tsp45I GTSAC 2 cut(s) 254, 712
TspDTI ATGAA 1 cut(s) 911
TspGWI ACGGA 4 cut(s) 196, 315, 359, 431
TspRI CASTG 3 cut(s) 632, 704, 967
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 990
XapI RAATTY 1 cut(s) 589
XceI RCATGY 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.