FvH4_3g25740

F-box protein At2g27310-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
18607615 .. 18609125
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25740.t1

Sequence Viewer

Length: 1209 bp
ATGGAAGCCGTTGTTGACTCTCTTCCTCCAAAGACCAAAGACCACCAGCTTCCCCAGGAGTACTATATAACCAAACCCCTCCAACCCTCTCTTTGTCATCACTCCCACCCCCACTTCAAACTCCAACTCGATCTCAGATTAACAAACGTACAGCTAGAGCTAGAGTTGGAAGAAGAAGAACAATACTTTGATAGAGAAATGGCTTCTTTCCTAGTTGAACAAGGCGGCGACGCCTCCATCTCCGCCCTCCACTCCGACATAATCACCTCCCACATCCTCACCCGCCTCGACGGCCCCACTCTCGCCTCTGCCGCATGTACTTCCTCGCAGTTGCGAGCCTTCTCGGCCGATCAGACACTCTGGAAGGACATCTGTGCCACCACCTGGCCTTCCGTCTCCGATAAACGTGTTCACGATATCATTTCCACTTTCCCGTCCGGCCACCGCTCGTTTTTCTCAGACTCCTTCCCTCTTCTTGATCACTCTGCTTGCTCGTCCGATACCAGCAGCCGTTTGGTAATTCCGGCCTCGGAGCTGATCTCCGCTGTGGATATATTCTACAAGGGGGAGCTCGTTTTCTCCAAGGTTCATGAGACCGAGACCGAGACCGGGTGGATCCTGTGCTCACCCTTCCGGATTGATCTGCTCGACCCAAAAGAGACCGTTCCGACTCCAATACGACACATCGGAGAAACCAACGAGTCCCTTAAGCACTTGGAGGAGAACTTGACATTGAGCTGGATCGTGATTGACCCCGCGCAAAAGCGCGCGGCCAATCTTTCCAGCCGTAAGCCAGTGTCGGTCACCCGACACTGGCTTACCGGCGAGGTACAGCTCCGTTTCGCGATGATCATGCCGGGGAATCGTCGCGGGGAGTTTGTGCAGTGCGGGATGGTCTTGACGTGCAAGGGGAGCGACGGAGGGAAGCTGCACGTGAGGGAGGTGAGCATGCAGATGGAGGCCATGGAGGGGAACCACCTGAACGGGAAGGAGAGTTTGGTAATTCTGCAAGGGGCGATTGAGGGAGGGAAGAGGAAGAGGGAGAGCGAGGAGGGAGGTGAAGGGAAGGCGAGATTTGGGGAGTTTCTGGAGATGAAGAGAGAGAGGAAGGAGAGGACGCAGAGGAGAGAGAGGGCTTTGGATATGGTCTGCATTGCTGCTGGTGTTACTTTGTTCATGGCTTTTTGGTCCTTCGTCTTGTTCCGATAG

Protein Analysis

403

Amino Acids

45.31

Weight (kDa)

5.91

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011837)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 384
AccBSI CCGCTC 1 cut(s) 447
AccII CGCG 5 cut(s) 758, 768, 770, 845, 870
AccIII TCCGGA 1 cut(s) 633
AclWI GGATC 3 cut(s) 610, 623, 749
AcoI YGGCCR 3 cut(s) 345, 439, 771
AcvI CACGTG 1 cut(s) 934
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 4 cut(s) 62, 150, 319, 831
AfiI CCNNNNNNNGG 4 cut(s) 384, 609, 813, 969
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 2 cut(s) 118, 218
AjiI CACGTC 1 cut(s) 903
AjnI CCWGG 2 cut(s) 54, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 980, 1012
AluBI AGCT 8 cut(s) 49, 154, 160, 535, 571, 738, 835, 928
AluI AGCT 8 cut(s) 49, 154, 160, 535, 571, 738, 835, 928
Alw21I GWGCWC 2 cut(s) 573, 626
Alw26I GTCTC 5 cut(s) 400, 587, 593, 599, 653
AlwI GGATC 3 cut(s) 610, 623, 749
Aor13HI TCCGGA 1 cut(s) 633
AoxI GGCC 7 cut(s) 292, 345, 386, 439, 525, 771, 960
ApeKI GCWGC 3 cut(s) 507, 928, 1157
AspLEI GCGC 3 cut(s) 760, 768, 770
AspS9I GGNCC 2 cut(s) 293, 1188
AsuC2I CCSGG 2 cut(s) 610, 858
AsuHPI GGTGA 6 cut(s) 256, 271, 618, 796, 955, 1070
AvaII GGWCC 1 cut(s) 1188
BamHI GGATCC 1 cut(s) 615
BanII GRGCYC 1 cut(s) 573
BbrPI CACGTG 1 cut(s) 934
Bbv12I GWGCWC 2 cut(s) 573, 626
BbvI GCAGC 3 cut(s) 519, 915, 1144
BccI CCATC 3 cut(s) 245, 886, 949
BceAI ACGGC 3 cut(s) 307, 495, 771
BcgI CGANNNNNNTGC 2 cut(s) 835, 869
BciT130I CCWGG 2 cut(s) 56, 385
BclI TGATCA 2 cut(s) 478, 849
BcnI CCSGG 2 cut(s) 610, 858
BcoDI GTCTC 5 cut(s) 400, 587, 593, 599, 653
BfaI CTAG 3 cut(s) 155, 161, 212
BfrI CTTAAG 1 cut(s) 707
BglI GCCNNNNNGGC 2 cut(s) 291, 344
BisI GCNGC 6 cut(s) 226, 312, 508, 771, 929, 1158
BlsI GCNGC 6 cut(s) 227, 313, 509, 772, 930, 1159
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 4 cut(s) 56, 385, 610, 858
Bme18I GGWCC 1 cut(s) 1188
BmgBI CACGTC 1 cut(s) 903
BmgT120I GGNCC 2 cut(s) 293, 1188
BmiI GGNNCC 3 cut(s) 295, 617, 974
BmrFI CCNGG 4 cut(s) 56, 385, 610, 858
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BpmI CTGGAG 1 cut(s) 1109
BpuMI CCSGG 2 cut(s) 610, 858
BsaAI YACGTR 1 cut(s) 934
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 4 cut(s) 587, 593, 599, 653
BsaJI CCNNGG 5 cut(s) 54, 528, 582, 857, 963
BsaWI WCCGGW 1 cut(s) 633
Bsc4I CCNNNNNNNGG 4 cut(s) 384, 609, 813, 969
Bse118I RCCGGY 1 cut(s) 821
Bse1I ACTGG 2 cut(s) 794, 818
Bse3DI GCAATG 1 cut(s) 1152
BseAI TCCGGA 1 cut(s) 633
BseBI CCWGG 2 cut(s) 56, 385
BseDI CCNNGG 5 cut(s) 54, 528, 582, 857, 963
BseGI GGATG 2 cut(s) 273, 897
BseLI CCNNNNNNNGG 4 cut(s) 384, 609, 813, 969
BseMI GCAATG 1 cut(s) 1152
BseMII CTCAG 2 cut(s) 148, 471
BseNI ACTGG 2 cut(s) 794, 818
BsePI GCGCGC 1 cut(s) 766
BseRI GAGGAG 3 cut(s) 734, 1064, 1138
BseX3I CGGCCG 1 cut(s) 345
BseXI GCAGC 3 cut(s) 519, 915, 1144
BsgI GTGCAG 2 cut(s) 902, 914
Bsh1236I CGCG 5 cut(s) 758, 768, 770, 845, 870
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 7 cut(s) 294, 347, 388, 441, 527, 773, 962
BsiEI CGRYCG 1 cut(s) 348
BsiHKAI GWGCWC 2 cut(s) 573, 626
BsiSI CCGG 6 cut(s) 438, 524, 609, 634, 822, 857
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 4 cut(s) 384, 609, 813, 969
BsmAI GTCTC 5 cut(s) 400, 587, 593, 599, 653
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 688
BsnI GGCC 7 cut(s) 294, 347, 388, 441, 527, 773, 962
Bso31I GGTCTC 4 cut(s) 587, 593, 599, 653
Bsp1286I GDGCHC 2 cut(s) 573, 626
Bsp13I TCCGGA 1 cut(s) 633
Bsp143I GATC 8 cut(s) 130, 349, 478, 537, 615, 640, 741, 849
Bsp19I CCATGG 1 cut(s) 963
Bsp68I TCGCGA 1 cut(s) 845
BspANI GGCC 7 cut(s) 294, 347, 388, 441, 527, 773, 962
BspCNI CTCAG 2 cut(s) 147, 470
BspEI TCCGGA 1 cut(s) 633
BspFNI CGCG 5 cut(s) 758, 768, 770, 845, 870
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 295, 617, 974
BspPI GGATC 3 cut(s) 610, 623, 749
BspTI CTTAAG 1 cut(s) 707
BspTNI GGTCTC 4 cut(s) 587, 593, 599, 653
BsrBI CCGCTC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 1152
BsrFI RCCGGY 1 cut(s) 821
BsrI ACTGG 2 cut(s) 794, 818
BssAI RCCGGY 1 cut(s) 821
BssECI CCNNGG 5 cut(s) 54, 528, 582, 857, 963
BssHII GCGCGC 1 cut(s) 766
BssMI GATC 8 cut(s) 130, 349, 478, 537, 615, 640, 741, 849
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 2 cut(s) 582, 963
Bst2UI CCWGG 2 cut(s) 56, 385
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 5 cut(s) 27, 477, 1025, 1031, 1091
BstACI GRCGYC 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 707
BstBAI YACGTR 1 cut(s) 934
BstC8I GCNNGC 4 cut(s) 336, 490, 768, 950
BstDEI CTNAG 2 cut(s) 134, 457
BstDSI CCRYGG 1 cut(s) 963
BstEII GGTNACC 1 cut(s) 802
BstF5I GGATG 2 cut(s) 273, 897
BstFNI CGCG 5 cut(s) 758, 768, 770, 845, 870
BstHHI GCGC 3 cut(s) 760, 768, 770
BstKTI GATC 8 cut(s) 133, 352, 481, 540, 618, 643, 744, 852
BstMAI GTCTC 5 cut(s) 400, 587, 593, 599, 653
BstMBI GATC 8 cut(s) 130, 349, 478, 537, 615, 640, 741, 849
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 4 cut(s) 291, 311, 344, 912
BstNI CCWGG 2 cut(s) 56, 385
BstNSI RCATGY 2 cut(s) 318, 952
BstPI GGTNACC 1 cut(s) 802
BstSCI CCNGG 4 cut(s) 54, 383, 608, 856
BstUI CGCG 5 cut(s) 758, 768, 770, 845, 870
BstV1I GCAGC 3 cut(s) 519, 915, 1144
BstX2I RGATCY 1 cut(s) 615
BstYI RGATCY 1 cut(s) 615
BstZI CGGCCG 1 cut(s) 345
BsuRI GGCC 7 cut(s) 294, 347, 388, 441, 527, 773, 962
BtgI CCRYGG 1 cut(s) 963
BtgZI GCGATG 1 cut(s) 860
BtrI CACGTC 1 cut(s) 903
BtsCI GGATG 2 cut(s) 273, 897
BtsI GCAGTG 1 cut(s) 890
BtsIMutI CAGTG 3 cut(s) 801, 811, 890
BtuMI TCGCGA 1 cut(s) 845
Cac8I GCNNGC 4 cut(s) 336, 490, 768, 950
CciI TCATGA 1 cut(s) 589
CfoI GCGC 3 cut(s) 760, 768, 770
Cfr10I RCCGGY 1 cut(s) 821
Cfr13I GGNCC 2 cut(s) 293, 1188
CseI GACGC 2 cut(s) 239, 1126
Csp6I GTAC 4 cut(s) 61, 149, 318, 830
CviAII CATG 6 cut(s) 315, 590, 853, 949, 964, 1177
CviQI GTAC 4 cut(s) 61, 149, 318, 830
DdeI CTNAG 2 cut(s) 134, 457
DpnI GATC 8 cut(s) 132, 351, 480, 539, 617, 642, 743, 851
DpnII GATC 8 cut(s) 130, 349, 478, 537, 615, 640, 741, 849
EaeI YGGCCR 3 cut(s) 345, 439, 771
EagI CGGCCG 1 cut(s) 345
Eam1104I CTCTTC 5 cut(s) 27, 477, 1025, 1031, 1091
EarI CTCTTC 5 cut(s) 27, 477, 1025, 1031, 1091
EciI GGCGGA 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 571
EclXI CGGCCG 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 582, 963
Eco24I GRGCYC 1 cut(s) 573
Eco31I GGTCTC 4 cut(s) 587, 593, 599, 653
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 1188
Eco52I CGGCCG 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 571
Eco72I CACGTG 1 cut(s) 934
Eco91I GGTNACC 1 cut(s) 802
EcoICRI GAGCTC 1 cut(s) 571
EcoO65I GGTNACC 1 cut(s) 802
EcoRII CCWGG 2 cut(s) 54, 383
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 582, 963
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 2 cut(s) 582, 963
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 6 cut(s) 318, 593, 856, 952, 967, 1180
FaqI GGGAC 1 cut(s) 688
FatI CATG 6 cut(s) 314, 589, 852, 948, 963, 1176
FauI CCCGC 4 cut(s) 290, 763, 863, 881
FbaI TGATCA 2 cut(s) 478, 849
Fnu4HI GCNGC 6 cut(s) 226, 312, 508, 771, 929, 1158
FokI GGATG 2 cut(s) 260, 904
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 6 cut(s) 226, 312, 508, 771, 929, 1158
FspBI CTAG 3 cut(s) 155, 161, 212
GlaI GCGC 3 cut(s) 759, 767, 769
GluI GCNGC 6 cut(s) 226, 312, 508, 771, 929, 1158
GsuI CTGGAG 1 cut(s) 1109
HaeIII GGCC 7 cut(s) 294, 347, 388, 441, 527, 773, 962
HapII CCGG 6 cut(s) 438, 524, 609, 634, 822, 857
HgaI GACGC 2 cut(s) 239, 1126
HhaI GCGC 3 cut(s) 760, 768, 770
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 6 cut(s) 318, 593, 856, 952, 967, 1180
Hin6I GCGC 3 cut(s) 758, 766, 768
HinP1I GCGC 3 cut(s) 758, 766, 768
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 5 cut(s) 17, 461, 670, 701, 862
HpaII CCGG 6 cut(s) 438, 524, 609, 634, 822, 857
HphI GGTGA 6 cut(s) 256, 271, 618, 796, 955, 1070
Hpy166II GTNNAC 2 cut(s) 16, 412
Hpy188III TCNNGA 9 cut(s) 361, 413, 476, 590, 634, 745, 844, 898, 1088
Hpy8I GTNNAC 2 cut(s) 16, 412
Hpy99I CGWCG 4 cut(s) 233, 293, 870, 920
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 4 cut(s) 147, 406, 902, 933
HpyCH4V TGCA 6 cut(s) 883, 906, 931, 952, 1009, 1152
HpyF10VI GCNNNNNNNGC 4 cut(s) 291, 311, 344, 912
HpyF3I CTNAG 2 cut(s) 134, 457
HpySE526I ACGT 4 cut(s) 147, 406, 902, 933
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 6 cut(s) 318, 593, 856, 952, 967, 1180
HspAI GCGC 3 cut(s) 758, 766, 768
Kpn2I TCCGGA 1 cut(s) 633
Ksp22I TGATCA 2 cut(s) 478, 849
Kzo9I GATC 8 cut(s) 130, 349, 478, 537, 615, 640, 741, 849
LmnI GCTCC 4 cut(s) 532, 568, 840, 912
Lsp1109I GCAGC 3 cut(s) 519, 915, 1144
MaeI CTAG 3 cut(s) 155, 161, 212
MaeII ACGT 4 cut(s) 147, 406, 902, 933
MaeIII GTNAC 2 cut(s) 802, 1165
MalI GATC 8 cut(s) 132, 351, 480, 539, 617, 642, 743, 851
MbiI CCGCTC 1 cut(s) 447
MboI GATC 8 cut(s) 130, 349, 478, 537, 615, 640, 741, 849
MboII GAAGA 8 cut(s) 14, 182, 185, 188, 464, 1042, 1048, 1108
MflI RGATCY 1 cut(s) 615
MhlI GDGCHC 2 cut(s) 573, 626
MluCI AATT 2 cut(s) 519, 1002
MlyI GAGTC 4 cut(s) 11, 455, 664, 710
MmeI TCCRAC 5 cut(s) 106, 147, 148, 279, 692
MroI TCCGGA 1 cut(s) 633
MseI TTAA 2 cut(s) 140, 708
MslI CAYNNNNRTG 1 cut(s) 953
MspA1I CMGCKG 1 cut(s) 545
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 6 cut(s) 438, 524, 609, 634, 822, 857
MspR9I CCNGG 4 cut(s) 56, 385, 610, 858
MvaI CCWGG 2 cut(s) 56, 385
MvnI CGCG 5 cut(s) 758, 768, 770, 845, 870
MwoI GCNNNNNNNGC 4 cut(s) 291, 311, 344, 912
NciI CCSGG 2 cut(s) 610, 858
NcoI CCATGG 1 cut(s) 963
NdeII GATC 8 cut(s) 130, 349, 478, 537, 615, 640, 741, 849
NlaIII CATG 6 cut(s) 318, 593, 856, 952, 967, 1180
NlaIV GGNNCC 3 cut(s) 295, 617, 974
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 802
NruI TCGCGA 1 cut(s) 845
NspI RCATGY 2 cut(s) 318, 952
PaeI GCATGC 1 cut(s) 952
PagI TCATGA 1 cut(s) 589
PauI GCGCGC 1 cut(s) 766
PfeI GAWTC 1 cut(s) 862
PflMI CCANNNNNTGG 1 cut(s) 384
PkrI GCNGC 6 cut(s) 227, 313, 509, 772, 930, 1159
PleI GAGTC 4 cut(s) 11, 455, 664, 709
PmaCI CACGTG 1 cut(s) 934
PmlI CACGTG 1 cut(s) 934
PpsI GAGTC 4 cut(s) 11, 455, 664, 709
Ppu21I YACGTR 1 cut(s) 934
Psp124BI GAGCTC 1 cut(s) 573
Psp6I CCWGG 2 cut(s) 54, 383
PspCI CACGTG 1 cut(s) 934
PspEI GGTNACC 1 cut(s) 802
PspGI CCWGG 2 cut(s) 54, 383
PspN4I GGNNCC 3 cut(s) 295, 617, 974
PspPI GGNCC 2 cut(s) 293, 1188
PsuI RGATCY 1 cut(s) 615
PteI GCGCGC 1 cut(s) 766
RruI TCGCGA 1 cut(s) 845
RsaI GTAC 4 cut(s) 62, 150, 319, 831
RsaNI GTAC 4 cut(s) 61, 149, 318, 830
RseI CAYNNNNRTG 1 cut(s) 953
SacI GAGCTC 1 cut(s) 573
SaqAI TTAA 2 cut(s) 140, 708
SatI GCNGC 6 cut(s) 226, 312, 508, 771, 929, 1158
Sau3AI GATC 8 cut(s) 130, 349, 478, 537, 615, 640, 741, 849
Sau96I GGNCC 2 cut(s) 293, 1188
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 4 cut(s) 11, 455, 664, 710
ScrFI CCNGG 4 cut(s) 56, 385, 610, 858
SduI GDGCHC 2 cut(s) 573, 626
SinI GGWCC 1 cut(s) 1188
SmiMI CAYNNNNRTG 1 cut(s) 953
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
SphI GCATGC 1 cut(s) 952
Sse9I AATT 2 cut(s) 519, 1002
SspMI CTAG 3 cut(s) 155, 161, 212
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 4 cut(s) 54, 383, 608, 856
StyI CCWWGG 2 cut(s) 582, 963
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 4 cut(s) 150, 409, 905, 936
TaqI TCGA 3 cut(s) 129, 288, 648
TaqII GACCGA 3 cut(s) 611, 617, 790
TasI AATT 2 cut(s) 519, 1002
TatI WGTACW 2 cut(s) 60, 317
TauI GCSGC 3 cut(s) 228, 314, 773
TfiI GAWTC 1 cut(s) 862
Tru1I TTAA 2 cut(s) 140, 708
Tru9I TTAA 2 cut(s) 140, 708
TscAI CASTG 3 cut(s) 801, 818, 890
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 3 cut(s) 507, 928, 1157
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 3 cut(s) 578, 1109, 1165
TspGWI ACGGA 3 cut(s) 382, 827, 933
TspRI CASTG 3 cut(s) 801, 818, 890
Van91I CCANNNNNTGG 1 cut(s) 384
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 1188
XceI RCATGY 2 cut(s) 318, 952
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XspI CTAG 3 cut(s) 155, 161, 212
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.