AT2G27770

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012206
Physical Location & Seq
Reverse (-)
11832543 .. 11834427
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27770.1

Sequence Viewer

Length: 963 bp
ATGAGAGATTTGGTGTCATGTTTCAGTGAGAACTCAATAAACGTGACACATCCCTTATCAATATCATCTTCATCATCATCATGTTCAAAATACAGTACCAACAATGTTTGTATCTCACCATCTCTCATACCATCAATACAAACCTCCATTACAAGCATCTACAGAATCACTTTATCGAAACATCTCATCATCAAAGTCACATGGTGCAATCCACACAACAACAATGGCTTAAGCATCTCTGTTGCATCCGCAGATCAAAACCCTTCAACAACTCTCAAACTCAACACTTCTTCTCGTTTCTTCCGTAAGAAGAAAGGTAACAAATCGGTTGATTCCGATCTCGGTAAAATCGAGGTTTTTTGGGATCTTTCTTCAGCTAAATATGATTCTAACTTGTGTGGTCCTGAACCTATCAATGGCTTCTACGTTATCGTCCTCGTTGATGGTCAAATGGGTCTTCTTCTTGGAGATTCATCTGAAGAAACTCTCCGTAAAAAAGGTTTCTCCGGCGATATCGGTTTCGATTTCTCTCTTGTTTCTCGACAAGAACATTTCACAGGGAACAATACTTTTTACTCGACTAAAGTAAGATTCGTTGAGACAGGAGATTCACATGAAATCGTCATCAGATGTAATAAAGAAACAGAGGGTCTAAAACAGAGCAATCATTACCCTGTTCTCTCTGTTTGTATTGATAAGAAGACGGTGATAAAAGTGAAGAGGCTTCAATGGAATTTCAGAGGGAATCAAACGATTTTCTTGGATGGATTGCTTGTGGATCTGATGTGGGATGTTCATGATTGGTTCTTTAGTAATCAAGGAGCTTGTGGAAGAGCTGTGTTCATGTTTAGGACAAGGAATGGTTTAGACAGCAGCAGGCTTTGGTTAGAAGAGAAGATTGTTAAGAAAGATCAACAAGACAAGCTTGACTTCTCTCTCTTCATTTACGCCTGTAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

320

Amino Acids

36.1

Weight (kDa)

8.77

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 46 - 319 4.7e-88 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27770
fragaria_vesca FvH4_3g24180
malus_domestica MD03G1135700.v1.1 MD11G1158200.v1.1
prunus_persica Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1
pyrus_communis pycom03g09160 pycom11g12850
rosa_chinensis RchiOBHm_Chr5g0043291
rosa_laevigata RLG00000034177
rosa_multiflora Rmu_sc0005936.1_g000006
rosa_roxburghii Rroxscaffold_1G00037530
rosa_rugosa Rorug05G0205100
rosa_samantha Rh5BG297100 Rh5CG326900 Rh5DG306700
rosa_wichuraiana Rw5G026880 Rw5G026950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 249
AclWI GGATC 2 cut(s) 372, 786
AcsI RAATTY 1 cut(s) 733
AcuI CTGAAG 2 cut(s) 357, 498
AdeI CACNNNGTG 1 cut(s) 204
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 416
AflII CTTAAG 1 cut(s) 229
AgsI TTSAA 3 cut(s) 87, 267, 728
AluBI AGCT 4 cut(s) 377, 824, 836, 925
AluI AGCT 4 cut(s) 377, 824, 836, 925
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 2 cut(s) 372, 786
ApeKI GCWGC 1 cut(s) 873
ApoI RAATTY 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 108, 718
AvaII GGWCC 1 cut(s) 401
BbsI GAAGAC 2 cut(s) 449, 707
BbvI GCAGC 1 cut(s) 885
BccI CCATC 4 cut(s) 127, 139, 437, 758
BcoDI GTCTC 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 160
BfrI CTTAAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 874
BlsI GCNGC 1 cut(s) 875
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmsI GCATC 3 cut(s) 165, 243, 254
BpiI GAAGAC 2 cut(s) 449, 707
BsaBI GATNNNNATC 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse8I GATNNNNATC 1 cut(s) 336
BseGI GGATG 4 cut(s) 49, 245, 769, 796
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 416
BseXI GCAGC 1 cut(s) 885
BsiSI CCGG 1 cut(s) 507
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 593
Bsp143I GATC 5 cut(s) 253, 337, 364, 778, 910
BspACI CCGC 1 cut(s) 249
BspHI TCATGA 1 cut(s) 796
BspPI GGATC 2 cut(s) 372, 786
BspQI GCTCTTC 1 cut(s) 826
BspTI CTTAAG 1 cut(s) 229
BssMI GATC 5 cut(s) 253, 337, 364, 778, 910
Bst4CI ACNGT 2 cut(s) 95, 706
Bst6I CTCTTC 4 cut(s) 713, 826, 885, 944
BstAFI CTTAAG 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 878
BstF5I GGATG 4 cut(s) 49, 245, 769, 796
BstKTI GATC 5 cut(s) 256, 340, 367, 781, 913
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 5 cut(s) 253, 337, 364, 778, 910
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 885
BstV2I GAAGAC 2 cut(s) 449, 707
BstX2I RGATCY 2 cut(s) 364, 778
BstYI RGATCY 2 cut(s) 364, 778
BtsCI GGATG 4 cut(s) 49, 245, 769, 796
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 878
CciI TCATGA 1 cut(s) 796
Cfr13I GGNCC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 96
CviAII CATG 6 cut(s) 18, 81, 201, 614, 797, 844
CviJI RGCY 8 cut(s) 228, 377, 420, 724, 824, 836, 880, 925
CviKI_1 RGCY 8 cut(s) 228, 377, 420, 724, 824, 836, 880, 925
CviQI GTAC 1 cut(s) 96
DpnI GATC 5 cut(s) 255, 339, 366, 780, 912
DpnII GATC 5 cut(s) 253, 337, 364, 778, 910
DraIII CACNNNGTG 1 cut(s) 204
Eam1104I CTCTTC 4 cut(s) 713, 826, 885, 944
EarI CTCTTC 4 cut(s) 713, 826, 885, 944
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 401
Eco57I CTGAAG 2 cut(s) 357, 498
EcoRV GATATC 1 cut(s) 514
FaeI CATG 6 cut(s) 21, 84, 204, 617, 800, 847
FaiI YATR 8 cut(s) 19, 82, 128, 202, 384, 615, 798, 845
FalI AAGNNNNNCTT 4 cut(s) 909, 941, 914, 946
FatI CATG 6 cut(s) 17, 80, 200, 613, 796, 843
Fnu4HI GCNGC 1 cut(s) 874
FokI GGATG 4 cut(s) 36, 232, 776, 803
Fsp4HI GCNGC 1 cut(s) 874
GluI GCNGC 1 cut(s) 874
HapII CCGG 1 cut(s) 507
Hin1II CATG 6 cut(s) 21, 84, 204, 617, 800, 847
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 7 cut(s) 165, 332, 386, 470, 591, 608, 745
HpaII CCGG 1 cut(s) 507
HphI GGTGA 2 cut(s) 108, 718
Hpy188I TCNGA 5 cut(s) 337, 478, 629, 740, 783
Hpy188III TCNNGA 3 cut(s) 404, 540, 797
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 2 cut(s) 95, 706
HpyCH4IV ACGT 2 cut(s) 42, 426
HpyCH4V TGCA 2 cut(s) 207, 245
HpySE526I ACGT 2 cut(s) 42, 426
Hsp92II CATG 6 cut(s) 21, 84, 204, 617, 800, 847
Kzo9I GATC 5 cut(s) 253, 337, 364, 778, 910
LguI GCTCTTC 1 cut(s) 826
LmnI GCTCC 1 cut(s) 821
LpnPI CCDG 6 cut(s) 417, 520, 543, 588, 687, 862
Lsp1109I GCAGC 1 cut(s) 885
LweI GCATC 3 cut(s) 165, 243, 254
MaeII ACGT 2 cut(s) 42, 426
MaeIII GTNAC 3 cut(s) 43, 196, 317
MalI GATC 5 cut(s) 255, 339, 366, 780, 912
MboI GATC 5 cut(s) 253, 337, 364, 778, 910
MflI RGATCY 2 cut(s) 364, 778
MluCI AATT 1 cut(s) 733
MnlI CCTC 6 cut(s) 154, 346, 446, 640, 714, 734
MseI TTAA 2 cut(s) 230, 903
MslI CAYNNNNRTG 1 cut(s) 79
MspCI CTTAAG 1 cut(s) 229
MspI CCGG 1 cut(s) 507
NdeII GATC 5 cut(s) 253, 337, 364, 778, 910
NlaIII CATG 6 cut(s) 21, 84, 204, 617, 800, 847
NmuCI GTSAC 2 cut(s) 43, 196
PagI TCATGA 1 cut(s) 796
PciSI GCTCTTC 1 cut(s) 826
PcsI WCGNNNNNNNCGW 2 cut(s) 301, 348
PfeI GAWTC 7 cut(s) 165, 332, 386, 470, 591, 608, 745
PkrI GCNGC 1 cut(s) 875
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 2 cut(s) 364, 778
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 826
SaqAI TTAA 2 cut(s) 230, 903
SatI GCNGC 1 cut(s) 874
Sau3AI GATC 5 cut(s) 253, 337, 364, 778, 910
Sau96I GGNCC 1 cut(s) 401
SfaNI GCATC 3 cut(s) 165, 243, 254
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 1 cut(s) 733
SsiI CCGC 1 cut(s) 249
TaaI ACNGT 2 cut(s) 95, 706
TaiI ACGT 2 cut(s) 45, 429
TaqI TCGA 5 cut(s) 176, 351, 522, 541, 578
TasI AATT 1 cut(s) 733
TfiI GAWTC 7 cut(s) 165, 332, 386, 470, 591, 608, 745
Tru1I TTAA 2 cut(s) 230, 903
Tru9I TTAA 2 cut(s) 230, 903
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 43, 196
TseI GCWGC 1 cut(s) 873
Tsp45I GTSAC 2 cut(s) 43, 196
TspDTI ATGAA 6 cut(s) 60, 462, 630, 785, 832, 931
TspGWI ACGGA 2 cut(s) 293, 479
TspRI CASTG 1 cut(s) 31
Vha464I CTTAAG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.