Rorug05G0205100

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012206
Physical Location & Seq
Forward (+)
20487040 .. 20489476
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0205100.1

Sequence Viewer

Length: 1557 bp
ATGGATGTAACACTGGCTAGTTGGATATCGCTGAGCCTTGTTTTGGTTAGCATAATACTGAGATGGGCATGGAGTGTGCTGGATTGGGTTTGGCTGAAGCCGAAGAAACTAGAAAGATGTTTGAGGGAGCAAGGCCTTCAAGGCAATTCCTACAAGTTCTTGTATGGAGATGTGAAGGAGAACTCTATCCTGCTAAAACATGCAAAATCCAAACCCATGAACCTCTCCACCTGCCATGACATAGCACCACGACTCATTCCTTTTCTCGATCAAACCGTAAAAACTTATGGTAAGAACTCTTTTGTTTGGAGTGGCCCCGTACCAAGGGTGACCATTATGAATCCTGAAGATGTGAAAGATGTCTTCACAAAACTTGATGATTTTCTTAAGCCAGTATCAAACCCACTTCTCAATTTCCTAACAACGGGTCTTCTAAGCTATGAAGGTGAGAAATGGGCTAAGCGAAGGAGGATTATCAACCCAACATTCCATGTAGCGAAACTAAAGCAAATGTTACCCGCCTTTCACATAAGTTGTGATGAGATGATTAAGGAATGGGAGAGCTTGGCTTCCAAAGAGGGCTCATCATGTCTGTTGGATGTTTGGCCATCTCTACAACACTTGACGGCTGATGTAATTTCTCGAACAGCATTTGGAAGTAGCTATCAGGAAGGAAGGAAAATGTTTGAACTCCTCAAAGAGCAAGTAATGCTTGTAATGAATGCCATACAAAGTGTGTACATACCAGGATGGAGGTTTCTACCAACGAAGATGAACAAGAGGATGAAGAAAATTGACAAAGAGGTAAAAGGTTTACTTAAGGGTATAATAAATAAAAGAGAGAAGGCCATTGGGGCAGGTGAAGCCTCTAAAGATGACTTATTAGGTACACTTATGGAGTCAAAATTCAAGGACATCCAGGGAAATGGGAAGGTTGGGATGAGTATTGAAGATGTAATTGAGGAATGTAAGCTGTTTTACCTTGCTGGGCAAGAGACCACTTCCATATTGCTGGTTTGGACAATAATATTACTTGGTCAAAATCAGAATTGGCAAGATCGAGCAAGACAAGAGGTTTTTCATGTCTTTGGAAGCAACAAGCCAGACTTTGATGGACTATCTCACCTAAAAGTAGTAACCATGATTTTACATGAAGTTCTTCGATTGTACTCACCAGTGGATATGATCTCTCGAACCACTCACAAGAAAACACAACTCGGGAAATTGTCACTACCAGCTGGAGTCCAAGTCGACTTACCAACAGTGCTCATTCACCGTGACAAAGAACTGTGGGGTGATGATGCAAACGAGTTCAATCCTGAGAGGTTTTCGGAAGGAGTTTCCAAGGCAACAAAGAGCCAACTCTCATTTATCCCTTTCGGAGGTGGTCCCCGGATTTGCATTGGACAAAACTTTGCTATGATAGAAGCGAAGTTGGCCTTGTCATTGATCTTGCTACACTTTGACTTCGAGCTTTCTCCATCTTATGCTCATGCTCCTTCTGCACCTATGATTCGACCACAGTATGGAGCTCCTATCATTTTACAGAAGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

518

Amino Acids

58.76

Weight (kDa)

9.19

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 89 - 495 3e-85 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27770
fragaria_vesca FvH4_3g24180
malus_domestica MD03G1135700.v1.1 MD11G1158200.v1.1
prunus_persica Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1
pyrus_communis pycom03g09160 pycom11g12850
rosa_chinensis RchiOBHm_Chr5g0043291
rosa_laevigata RLG00000034177
rosa_multiflora Rmu_sc0005936.1_g000006
rosa_roxburghii Rroxscaffold_1G00037530
rosa_rugosa Rorug05G0205100
rosa_samantha Rh5BG297100 Rh5CG326900 Rh5DG306700
rosa_wichuraiana Rw5G026880 Rw5G026950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 239, 848
Acc36I ACCTGC 2 cut(s) 239, 848
AccB7I CCANNNNNTGG 1 cut(s) 1526
AccI GTMKAC 1 cut(s) 1251
AciI CCGC 1 cut(s) 519
AcoI YGGCCR 1 cut(s) 605
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 2 cut(s) 116, 366
AfaI GTAC 4 cut(s) 321, 740, 889, 1169
AfeI AGCGCT 1 cut(s) 1553
AfiI CCNNNNNNNGG 5 cut(s) 43, 324, 424, 1382, 1526
AflII CTTAAG 2 cut(s) 386, 818
AgsI TTSAA 5 cut(s) 140, 689, 910, 950, 1315
AjnI CCWGG 2 cut(s) 745, 918
AluBI AGCT 7 cut(s) 438, 564, 663, 973, 1238, 1474, 1532
AluI AGCT 7 cut(s) 438, 564, 663, 973, 1238, 1474, 1532
Alw21I GWGCWC 2 cut(s) 1269, 1534
Alw26I GTCTC 1 cut(s) 989
Ama87I CYCGRG 1 cut(s) 1217
Aor51HI AGCGCT 1 cut(s) 1553
AoxI GGCC 5 cut(s) 133, 313, 605, 846, 1437
ApoI RAATTY 1 cut(s) 905
Asp700I GAANNNNTTC 1 cut(s) 1158
AspLEI GCGC 1 cut(s) 1554
AspS9I GGNCC 2 cut(s) 314, 1388
AsuC2I CCSGG 1 cut(s) 1393
AsuHPI GGTGA 7 cut(s) 340, 458, 872, 1115, 1164, 1265, 1307
AvaI CYCGRG 1 cut(s) 1217
AvaII GGWCC 1 cut(s) 1388
BalI TGGCCA 1 cut(s) 607
BanII GRGCYC 2 cut(s) 584, 1534
BbsI GAAGAC 2 cut(s) 355, 422
Bbv12I GWGCWC 2 cut(s) 1269, 1534
BccI CCATC 5 cut(s) 57, 616, 744, 1106, 1489
BceAI ACGGC 1 cut(s) 642
BciT130I CCWGG 2 cut(s) 747, 920
BcnI CCSGG 1 cut(s) 1393
BcoDI GTCTC 1 cut(s) 989
BfaI CTAG 2 cut(s) 18, 110
BfoI RGCGCY 1 cut(s) 1555
BfrI CTTAAG 2 cut(s) 386, 818
BfuAI ACCTGC 2 cut(s) 239, 848
BglI GCCNNNNNGGC 2 cut(s) 141, 854
BlpI GCTNAGC 2 cut(s) 32, 459
Bme1390I CCNGG 3 cut(s) 747, 920, 1393
Bme18I GGWCC 1 cut(s) 1388
BmeT110I CYCGRG 1 cut(s) 1217
BmgT120I GGNCC 2 cut(s) 314, 1388
BmiI GGNNCC 2 cut(s) 316, 1390
BmrFI CCNGG 3 cut(s) 747, 920, 1393
BmsI GCATC 1 cut(s) 1291
BpiI GAAGAC 2 cut(s) 355, 422
BpmI CTGGAG 1 cut(s) 1260
Bpu1102I GCTNAGC 2 cut(s) 32, 459
BpuMI CCSGG 1 cut(s) 1393
BsaI GGTCTC 1 cut(s) 989
BsaJI CCNNGG 4 cut(s) 323, 919, 1344, 1391
BsaXI ACNNNNNCTCC 2 cut(s) 1233, 1263
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 324, 424, 1382, 1526
Bse1I ACTGG 3 cut(s) 18, 392, 1175
BseBI CCWGG 2 cut(s) 747, 920
BseDI CCNNGG 4 cut(s) 323, 919, 1344, 1391
BseGI GGATG 6 cut(s) 10, 604, 755, 789, 915, 945
BseLI CCNNNNNNNGG 5 cut(s) 43, 324, 424, 1382, 1526
BseMII CTCAG 3 cut(s) 23, 50, 1311
BseNI ACTGG 3 cut(s) 18, 392, 1175
BseRI GAGGAG 1 cut(s) 683
BseYI CCCAGC 1 cut(s) 986
BsgI GTGCAG 1 cut(s) 1488
BshFI GGCC 5 cut(s) 135, 315, 607, 848, 1439
BsiHKAI GWGCWC 2 cut(s) 1269, 1534
BsiHKCI CYCGRG 1 cut(s) 1217
BsiSI CCGG 1 cut(s) 1393
BslFI GGGAC 1 cut(s) 1374
BslI CCNNNNNNNGG 5 cut(s) 43, 324, 424, 1382, 1526
BsmAI GTCTC 1 cut(s) 989
BsmFI GGGAC 1 cut(s) 1374
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 5 cut(s) 135, 315, 607, 848, 1439
Bso31I GGTCTC 1 cut(s) 989
BsoBI CYCGRG 1 cut(s) 1217
Bsp1286I GDGCHC 3 cut(s) 584, 1269, 1534
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 4 cut(s) 268, 1057, 1185, 1449
Bsp1720I GCTNAGC 2 cut(s) 32, 459
BspACI CCGC 1 cut(s) 519
BspANI GGCC 5 cut(s) 135, 315, 607, 848, 1439
BspCNI CTCAG 3 cut(s) 24, 51, 1312
BspLI GGNNCC 2 cut(s) 316, 1390
BspMI ACCTGC 2 cut(s) 239, 848
BspTI CTTAAG 2 cut(s) 386, 818
BspTNI GGTCTC 1 cut(s) 989
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 3 cut(s) 18, 392, 1175
BssECI CCNNGG 4 cut(s) 323, 919, 1344, 1391
BssMI GATC 4 cut(s) 268, 1057, 1185, 1449
BssT1I CCWWGG 2 cut(s) 323, 1344
Bst2UI CCWGG 2 cut(s) 747, 920
Bst4CI ACNGT 5 cut(s) 277, 1264, 1277, 1290, 1524
BstAFI CTTAAG 2 cut(s) 386, 818
BstAPI GCANNNNNTGC 1 cut(s) 709
BstAUI TGTACA 1 cut(s) 738
BstDEI CTNAG 5 cut(s) 32, 59, 434, 459, 1320
BstEII GGTNACC 1 cut(s) 328
BstENI CCTNNNNNAGG 1 cut(s) 1380
BstF5I GGATG 6 cut(s) 10, 604, 755, 789, 915, 945
BstH2I RGCGCY 1 cut(s) 1555
BstHHI GCGC 1 cut(s) 1554
BstKTI GATC 4 cut(s) 271, 1060, 1188, 1452
BstMAI GTCTC 1 cut(s) 989
BstMBI GATC 4 cut(s) 268, 1057, 1185, 1449
BstMWI GCNNNNNNNGC 6 cut(s) 141, 709, 854, 863, 1436, 1502
BstNI CCWGG 2 cut(s) 747, 920
BstNSI RCATGY 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 328
BstSCI CCNGG 3 cut(s) 745, 918, 1391
BstV2I GAAGAC 2 cut(s) 355, 422
BstXI CCANNNNNNTGG 2 cut(s) 926, 1012
BsuRI GGCC 5 cut(s) 135, 315, 607, 848, 1439
BtsCI GGATG 6 cut(s) 10, 604, 755, 789, 915, 945
BtsIMutI CAGTG 3 cut(s) 11, 1182, 1269
BveI ACCTGC 2 cut(s) 239, 848
CfoI GCGC 1 cut(s) 1554
Cfr13I GGNCC 2 cut(s) 314, 1388
Csp6I GTAC 4 cut(s) 320, 739, 888, 1168
CviQI GTAC 4 cut(s) 320, 739, 888, 1168
DdeI CTNAG 5 cut(s) 32, 59, 434, 459, 1320
DpnI GATC 4 cut(s) 270, 1059, 1187, 1451
DpnII GATC 4 cut(s) 268, 1057, 1185, 1449
EaeI YGGCCR 1 cut(s) 605
Ecl136II GAGCTC 1 cut(s) 1532
Eco130I CCWWGG 2 cut(s) 323, 1344
Eco147I AGGCCT 1 cut(s) 135
Eco24I GRGCYC 2 cut(s) 584, 1534
Eco31I GGTCTC 1 cut(s) 989
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 1388
Eco47III AGCGCT 1 cut(s) 1553
Eco53kI GAGCTC 1 cut(s) 1532
Eco57I CTGAAG 2 cut(s) 116, 366
Eco88I CYCGRG 1 cut(s) 1217
Eco91I GGTNACC 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 1532
EcoNI CCTNNNNNAGG 1 cut(s) 1380
EcoO65I GGTNACC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 745, 918
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 323, 1344
EcoT38I GRGCYC 2 cut(s) 584, 1534
ErhI CCWWGG 2 cut(s) 323, 1344
FalI AAGNNNNNCTT 8 cut(s) 696, 728, 801, 833, 1091, 1123, 1424, 1456
FaqI GGGAC 1 cut(s) 1374
FauI CCCGC 1 cut(s) 526
FblI GTMKAC 1 cut(s) 1251
FokI GGATG 6 cut(s) 17, 611, 762, 796, 902, 952
FriOI GRGCYC 2 cut(s) 584, 1534
FspBI CTAG 2 cut(s) 18, 110
GlaI GCGC 1 cut(s) 1553
GsaI CCCAGC 1 cut(s) 990
GsuI CTGGAG 1 cut(s) 1260
HaeII RGCGCY 1 cut(s) 1555
HaeIII GGCC 5 cut(s) 135, 315, 607, 848, 1439
HapII CCGG 1 cut(s) 1393
HhaI GCGC 1 cut(s) 1554
Hin6I GCGC 1 cut(s) 1552
HinP1I GCGC 1 cut(s) 1552
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HinfI GANTC 5 cut(s) 252, 340, 899, 1242, 1513
HpaII CCGG 1 cut(s) 1393
HphI GGTGA 7 cut(s) 340, 458, 872, 1115, 1164, 1265, 1307
Hpy166II GTNNAC 4 cut(s) 739, 815, 890, 1252
Hpy188I TCNGA 3 cut(s) 1047, 1333, 1382
Hpy188III TCNNGA 7 cut(s) 266, 344, 642, 668, 1191, 1219, 1319
Hpy8I GTNNAC 4 cut(s) 739, 815, 890, 1252
HpyCH4III ACNGT 5 cut(s) 277, 1264, 1277, 1290, 1524
HpyCH4V TGCA 4 cut(s) 203, 1304, 1401, 1505
HpyF10VI GCNNNNNNNGC 6 cut(s) 141, 709, 854, 863, 1436, 1502
HpyF3I CTNAG 5 cut(s) 32, 59, 434, 459, 1320
HspAI GCGC 1 cut(s) 1552
Kzo9I GATC 4 cut(s) 268, 1057, 1185, 1449
LmnI GCTCC 4 cut(s) 127, 1501, 1529, 1537
LweI GCATC 1 cut(s) 1291
MaeI CTAG 2 cut(s) 18, 110
MaeIII GTNAC 6 cut(s) 7, 328, 513, 1135, 1227, 1277
MalI GATC 4 cut(s) 270, 1059, 1187, 1451
MboI GATC 4 cut(s) 268, 1057, 1185, 1449
MboII GAAGA 8 cut(s) 115, 355, 359, 422, 781, 799, 962, 1151
MhlI GDGCHC 3 cut(s) 584, 1269, 1534
MlsI TGGCCA 1 cut(s) 607
MluCI AATT 8 cut(s) 145, 412, 636, 792, 905, 957, 1048, 1223
MluNI TGGCCA 1 cut(s) 607
MlyI GAGTC 3 cut(s) 246, 908, 1251
MmeI TCCRAC 1 cut(s) 576
Mox20I TGGCCA 1 cut(s) 607
MroXI GAANNNNTTC 1 cut(s) 1158
MscI TGGCCA 1 cut(s) 607
MseI TTAA 3 cut(s) 387, 549, 819
Msp20I TGGCCA 1 cut(s) 607
MspA1I CMGCKG 1 cut(s) 1238
MspCI CTTAAG 2 cut(s) 386, 818
MspI CCGG 1 cut(s) 1393
MspR9I CCNGG 3 cut(s) 747, 920, 1393
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 2 cut(s) 747, 920
MwoI GCNNNNNNNGC 6 cut(s) 141, 709, 854, 863, 1436, 1502
NciI CCSGG 1 cut(s) 1393
NdeII GATC 4 cut(s) 268, 1057, 1185, 1449
NlaIV GGNNCC 2 cut(s) 316, 1390
NmuCI GTSAC 3 cut(s) 328, 1227, 1277
NspI RCATGY 1 cut(s) 203
PaqCI CACCTGC 2 cut(s) 239, 848
PceI AGGCCT 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PctI GAATGC 1 cut(s) 727
PdmI GAANNNNTTC 1 cut(s) 1158
PfeI GAWTC 2 cut(s) 340, 1513
PflMI CCANNNNNTGG 1 cut(s) 1526
PleI GAGTC 3 cut(s) 246, 907, 1250
PpsI GAGTC 3 cut(s) 246, 907, 1250
Psp124BI GAGCTC 1 cut(s) 1534
Psp6I CCWGG 2 cut(s) 745, 918
PspEI GGTNACC 1 cut(s) 328
PspFI CCCAGC 1 cut(s) 986
PspGI CCWGG 2 cut(s) 745, 918
PspN4I GGNNCC 2 cut(s) 316, 1390
PspPI GGNCC 2 cut(s) 314, 1388
PvuII CAGCTG 1 cut(s) 1238
RsaI GTAC 4 cut(s) 321, 740, 889, 1169
RsaNI GTAC 4 cut(s) 320, 739, 888, 1168
SacI GAGCTC 1 cut(s) 1534
SalI GTCGAC 1 cut(s) 1250
SaqAI TTAA 3 cut(s) 387, 549, 819
Sau3AI GATC 4 cut(s) 268, 1057, 1185, 1449
Sau96I GGNCC 2 cut(s) 314, 1388
SchI GAGTC 3 cut(s) 246, 908, 1251
ScrFI CCNGG 3 cut(s) 747, 920, 1393
SduI GDGCHC 3 cut(s) 584, 1269, 1534
SfaNI GCATC 1 cut(s) 1291
SinI GGWCC 1 cut(s) 1388
SmlI CTYRAG 2 cut(s) 386, 818
SmoI CTYRAG 2 cut(s) 386, 818
Sse9I AATT 8 cut(s) 145, 412, 636, 792, 905, 957, 1048, 1223
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 1 cut(s) 519
SspI AATATT 1 cut(s) 1029
SspMI CTAG 2 cut(s) 18, 110
SstI GAGCTC 1 cut(s) 1534
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 745, 918, 1391
StyI CCWWGG 2 cut(s) 323, 1344
TaaI ACNGT 5 cut(s) 277, 1264, 1277, 1290, 1524
TaqI TCGA 8 cut(s) 267, 643, 1060, 1162, 1192, 1251, 1470, 1516
TasI AATT 8 cut(s) 145, 412, 636, 792, 905, 957, 1048, 1223
TatI WGTACW 2 cut(s) 738, 1167
TfiI GAWTC 2 cut(s) 340, 1513
Tru1I TTAA 3 cut(s) 387, 549, 819
Tru9I TTAA 3 cut(s) 387, 549, 819
TscAI CASTG 3 cut(s) 18, 1182, 1269
TseFI GTSAC 3 cut(s) 328, 1227, 1277
Tsp45I GTSAC 3 cut(s) 328, 1227, 1277
TspDTI ATGAA 8 cut(s) 233, 353, 456, 734, 788, 800, 1070, 1167
TspRI CASTG 3 cut(s) 18, 1182, 1269
Van91I CCANNNNNTGG 1 cut(s) 1526
Vha464I CTTAAG 2 cut(s) 386, 818
VpaK11BI GGWCC 1 cut(s) 1388
XagI CCTNNNNNAGG 1 cut(s) 1380
XapI RAATTY 1 cut(s) 905
XceI RCATGY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 1251
XmnI GAANNNNTTC 1 cut(s) 1158
XspI CTAG 2 cut(s) 18, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.