FvH4_3g24180

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012206
Physical Location & Seq
Reverse (-)
17183918 .. 17184832
915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24180.t1

Sequence Viewer

Length: 915 bp
ATGAGAGACAAACTGTCTTGTTTTAGTGAAAATGCAGTGAATGTTTCTCATCCTTCATGTTCTAGCTATGCAAACACTGCTTGTGTTTCTCCAAGTCTATCTCCTTCAGTCCAAAATGCAGTCACTAGTCTCTACAAGATCACTCTCTCCACCACTAAAAAGCAGTTCTTGGTCACAGTCGCCTGGTGCAAGAACCATTATGCACAAGGCTTGAGCATTAAGTTTGGTGATGATCCCTCAACATCCTTCAGACTCAACACCAATTCTCGCCTGTTTCGCAAGAAGAAAGGCTCTAAAGTCTTCGAATCACCAGAAAGCTCGAAGATGGAAATCATTTGGGATCTCTCCAGAGCCAAGTATGATGCTACTGGTCCTGAACCTGTTGATGGGTTTTACATTTTGGTCATGGTTGATTCAGAAATAGGCCTAATTCTAGGTGACATGGGTGAAGAAGCCATGACCAAGAAGTTCAAGACTAGTACCCCAGTTTCTAAGGTCTCTTTGATATCAAGGCAAGAGCATTATTCAGGAAGTAGTACCCTTTACTCCACCAAAGCTCAATTCAGTGATACTGGGATTTCTCATAACATTGTGATCAGATGTAGCGGAGAAAATGAAGGCTTGAAGCATCCAGTATTGTCTGTTTCGATTGATACGAAGACGGTGATTCGAGTAAAGAGGCTGCAGTGGAATTTTAGAGGAAACCAGACAATTTTTGTTGATGGTTTGCTGGTTGATCTGATGTGGGATGTTCATGATTGGTTCTTCAACAATCCTTCATCAAGATATGCAGTTTTCATGTTCAGAACAAGAAGTGGAATGGATAGCAGACTTTGGTTAGAAGAAAAGTTGGTGCAGAAAGAACAGGAAAAAGTTGAATTCTCCTTGTTGATCTATGCATGTAAGACTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

305

Amino Acids

34.32

Weight (kDa)

9.0

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 37 - 302 2.4e-89 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27770
fragaria_vesca FvH4_3g24180
malus_domestica MD03G1135700.v1.1 MD11G1158200.v1.1
prunus_persica Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1
pyrus_communis pycom03g09160 pycom11g12850
rosa_chinensis RchiOBHm_Chr5g0043291
rosa_laevigata RLG00000034177
rosa_multiflora Rmu_sc0005936.1_g000006
rosa_roxburghii Rroxscaffold_1G00037530
rosa_rugosa Rorug05G0205100
rosa_samantha Rh5BG297100 Rh5CG326900 Rh5DG306700
rosa_wichuraiana Rw5G026880 Rw5G026950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 606
AclWI GGATC 2 cut(s) 227, 348
AcsI RAATTY 2 cut(s) 691, 878
AcuI CTGAAG 2 cut(s) 90, 232
AfaI GTAC 2 cut(s) 481, 538
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 4 cut(s) 472, 625, 769, 878
AhdI GACNNNNNGTC 1 cut(s) 13
AhlI ACTAGT 2 cut(s) 125, 476
AjnI CCWGG 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 3 cut(s) 66, 318, 557
AluI AGCT 3 cut(s) 66, 318, 557
Alw26I GTCTC 2 cut(s) 134, 502
AlwI GGATC 2 cut(s) 227, 348
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 682
ApoI RAATTY 2 cut(s) 691, 878
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 5 cut(s) 239, 300, 449, 458, 676
AsuII TTCGAA 1 cut(s) 303
AvaII GGWCC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 292, 665
BbvI GCAGC 1 cut(s) 669
BccI CCATC 3 cut(s) 319, 380, 716
BciT130I CCWGG 1 cut(s) 184
BclI TGATCA 1 cut(s) 594
BcoDI GTCTC 2 cut(s) 134, 502
BcuI ACTAGT 2 cut(s) 125, 476
BfaI CTAG 4 cut(s) 63, 126, 434, 477
BfmI CTRYAG 1 cut(s) 683
BisI GCNGC 1 cut(s) 683
BlsI GCNGC 1 cut(s) 684
Bme1390I CCNGG 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 371
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 184
BmrI ACTGGG 2 cut(s) 479, 582
BmsI GCATC 2 cut(s) 352, 637
BmuI ACTGGG 2 cut(s) 479, 582
BpiI GAAGAC 2 cut(s) 292, 665
BpmI CTGGAG 1 cut(s) 331
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 502
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 4 cut(s) 373, 485, 577, 632
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 1 cut(s) 184
BseGI GGATG 4 cut(s) 49, 242, 628, 754
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 386
BseNI ACTGG 4 cut(s) 373, 485, 577, 632
BseXI GCAGC 1 cut(s) 669
BsgI GTGCAG 1 cut(s) 875
BshFI GGCC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 2 cut(s) 134, 502
BsnI GGCC 1 cut(s) 426
Bso31I GGTCTC 1 cut(s) 502
Bsp119I TTCGAA 1 cut(s) 303
Bsp143I GATC 6 cut(s) 138, 232, 340, 594, 736, 891
BspACI CCGC 1 cut(s) 606
BspANI GGCC 1 cut(s) 426
BspHI TCATGA 1 cut(s) 754
BspMAI CTGCAG 1 cut(s) 687
BspPI GGATC 2 cut(s) 227, 348
BspT104I TTCGAA 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 502
BsrI ACTGG 4 cut(s) 373, 485, 577, 632
BssMI GATC 6 cut(s) 138, 232, 340, 594, 736, 891
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 15, 178, 664
BstAPI GCANNNNNTGC 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 4 cut(s) 49, 242, 628, 754
BstKTI GATC 6 cut(s) 141, 235, 343, 597, 739, 894
BstMAI GTCTC 2 cut(s) 134, 502
BstMBI GATC 6 cut(s) 138, 232, 340, 594, 736, 891
BstMWI GCNNNNNNNGC 2 cut(s) 77, 276
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 903
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 683
BstV1I GCAGC 1 cut(s) 669
BstV2I GAAGAC 2 cut(s) 292, 665
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 1 cut(s) 426
BtsCI GGATG 4 cut(s) 49, 242, 628, 754
BtsI GCAGTG 3 cut(s) 42, 75, 692
BtsIMutI CAGTG 4 cut(s) 42, 75, 571, 692
CciI TCATGA 1 cut(s) 754
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 2 cut(s) 480, 537
CviAII CATG 7 cut(s) 57, 406, 442, 457, 755, 799, 900
CviQI GTAC 2 cut(s) 480, 537
DdeI CTNAG 1 cut(s) 492
DpnI GATC 6 cut(s) 140, 234, 342, 596, 738, 893
DpnII GATC 6 cut(s) 138, 232, 340, 594, 736, 891
DriI GACNNNNNGTC 1 cut(s) 13
Eam1105I GACNNNNNGTC 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 502
Eco32I GATATC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 2 cut(s) 90, 232
EcoRI GAATTC 1 cut(s) 878
EcoRII CCWGG 1 cut(s) 182
EcoRV GATATC 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 901
FaeI CATG 7 cut(s) 60, 409, 445, 460, 758, 802, 903
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 7 cut(s) 56, 405, 441, 456, 754, 798, 899
FbaI TGATCA 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 683
FokI GGATG 4 cut(s) 36, 229, 615, 761
Fsp4HI GCNGC 1 cut(s) 683
FspBI CTAG 4 cut(s) 63, 126, 434, 477
GluI GCNGC 1 cut(s) 683
GsuI CTGGAG 1 cut(s) 331
HaeIII GGCC 1 cut(s) 426
Hin1II CATG 7 cut(s) 60, 409, 445, 460, 758, 802, 903
HinfI GANTC 4 cut(s) 252, 305, 413, 667
HphI GGTGA 5 cut(s) 239, 300, 449, 458, 676
Hpy188I TCNGA 5 cut(s) 251, 418, 599, 741, 806
Hpy188III TCNNGA 6 cut(s) 348, 374, 472, 528, 755, 783
HpyAV CCTTC 5 cut(s) 63, 114, 256, 611, 786
HpyCH4III ACNGT 3 cut(s) 15, 178, 664
HpyCH4V TGCA 9 cut(s) 35, 71, 119, 189, 203, 685, 791, 856, 899
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 276
HpyF3I CTNAG 1 cut(s) 492
Hsp92II CATG 7 cut(s) 60, 409, 445, 460, 758, 802, 903
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 6 cut(s) 138, 232, 340, 594, 736, 891
Lsp1109I GCAGC 1 cut(s) 669
LweI GCATC 2 cut(s) 352, 637
MaeI CTAG 4 cut(s) 63, 126, 434, 477
MaeIII GTNAC 3 cut(s) 121, 172, 437
MalI GATC 6 cut(s) 140, 234, 342, 596, 738, 893
MboI GATC 6 cut(s) 138, 232, 340, 594, 736, 891
MboII GAAGA 7 cut(s) 292, 295, 334, 461, 670, 757, 854
MflI RGATCY 1 cut(s) 340
MluCI AATT 6 cut(s) 262, 429, 560, 691, 711, 878
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 3 cut(s) 247, 672, 692
Mph1103I ATGCAT 1 cut(s) 901
MseI TTAA 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 77, 276
NdeII GATC 6 cut(s) 138, 232, 340, 594, 736, 891
NlaIII CATG 7 cut(s) 60, 409, 445, 460, 758, 802, 903
NmuCI GTSAC 3 cut(s) 121, 172, 437
NsiI ATGCAT 1 cut(s) 901
NspI RCATGY 1 cut(s) 903
NspV TTCGAA 1 cut(s) 303
PagI TCATGA 1 cut(s) 754
PceI AGGCCT 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 653
PfeI GAWTC 3 cut(s) 305, 413, 667
PkrI GCNGC 1 cut(s) 684
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspPI GGNCC 1 cut(s) 371
PstI CTGCAG 1 cut(s) 687
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 2 cut(s) 481, 538
RsaNI GTAC 2 cut(s) 480, 537
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 683
Sau3AI GATC 6 cut(s) 138, 232, 340, 594, 736, 891
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 184
SetI ASST 6 cut(s) 68, 320, 382, 439, 498, 559
SfaNI GCATC 2 cut(s) 352, 637
SfcI CTRYAG 1 cut(s) 683
SfuI TTCGAA 1 cut(s) 303
SinI GGWCC 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SpeI ACTAGT 2 cut(s) 125, 476
Sse9I AATT 6 cut(s) 262, 429, 560, 691, 711, 878
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 1 cut(s) 606
SspMI CTAG 4 cut(s) 63, 126, 434, 477
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 3 cut(s) 15, 178, 664
TaqI TCGA 4 cut(s) 303, 320, 647, 670
TasI AATT 6 cut(s) 262, 429, 560, 691, 711, 878
TfiI GAWTC 3 cut(s) 305, 413, 667
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 4 cut(s) 42, 82, 571, 692
TseFI GTSAC 3 cut(s) 121, 172, 437
TseI GCWGC 1 cut(s) 682
Tsp45I GTSAC 3 cut(s) 121, 172, 437
TspDTI ATGAA 6 cut(s) 45, 630, 743, 768, 787, 900
TspRI CASTG 4 cut(s) 42, 82, 571, 692
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 2 cut(s) 691, 878
XceI RCATGY 1 cut(s) 903
XspI CTAG 4 cut(s) 63, 126, 434, 477
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.