pycom11g12850

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012206
Physical Location & Seq
Forward (+)
11880375 .. 11881290
916 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12850.1

Sequence Viewer

Length: 858 bp
ATGAGAGACATAGTTTCTTGTTTCAATGAAAATGCAGTGAACGTGTCTCATCCTTCATGTTCTAGCTATGCAAACACTGCTTGTGTTTCTCCAAACTTAACTCCTTCAGTCCAAAATGCAGTCTCGTGTGTCTACAGAATCACTCTCTCCTCCGCTCAAAAGCAGCTCATGGTTACAGTCTCCTGGTGCAAAAACCACTACGTACAAGGGTTGACCATTAAGCTAGCGGATGATCCATCAGCAGCATCCTTCAAGTTGAACACGAATTCGCGTATCTTCCGAAAGAAGAAAGGCACCAAAGTCATCGAATCTGATAAATCGAGGATGGAAATCTTTTGGGATCTCTCTAGAGCAAAGTATGATGTTAGTGGTCCTGAACCTGTTGAGGGATTTTACATTTTGGTCTTGGTTGATTCAGAAATAGGCCTAGTTCTAGGTGACATGGCTGAAGAAGCTGTAAGCAAGAAGTTCAAGACTAGTAGTGTTGCGAAAGTCTGTCTTGTTTCGAGGCAAGAGCATTGTTCCGGAAATGCTCTTTATTCCACAAGAGCTCAATTCTGTGACACAGGCATTGCACATGACATTTTGATAAAATGTAGTGGAGAAAATGAAGGCTTAAAACATCCGGTTTTATCTGTTTGCATTGACAAAAAGACGGTGATCCGAGTAAAGAGGCTGATTGATCTGATGTGGGATGTTCATAATTGGTTATTCAATCCTTCATCAAGGTATGCAGTGTTCATGTTCAGAACAAGAAGTGGGATGGACAGCCGATTGTGGTTGGAAGAGAAGATGGTGCACAAAGAGCAGGACAAAGTTGAATTCTCCTTGTTGATGTATGCCTGTAAGAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

286

Amino Acids

32.08

Weight (kDa)

8.79

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 37 - 283 2.2e-70 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27770
fragaria_vesca FvH4_3g24180
malus_domestica MD03G1135700.v1.1 MD11G1158200.v1.1
prunus_persica Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1
pyrus_communis pycom03g09160 pycom11g12850
rosa_chinensis RchiOBHm_Chr5g0043291
rosa_laevigata RLG00000034177
rosa_multiflora Rmu_sc0005936.1_g000006
rosa_roxburghii Rroxscaffold_1G00037530
rosa_rugosa Rorug05G0205100
rosa_samantha Rh5BG297100 Rh5CG326900 Rh5DG306700
rosa_wichuraiana Rw5G026880 Rw5G026950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 155
AccI GTMKAC 1 cut(s) 132
AccII CGCG 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 524
AciI CCGC 2 cut(s) 153, 227
AclWI GGATC 3 cut(s) 227, 348, 655
AcsI RAATTY 2 cut(s) 265, 821
AcuI CTGAAG 2 cut(s) 90, 468
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 386
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 6 cut(s) 25, 253, 259, 472, 715, 821
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 6 cut(s) 66, 166, 223, 455, 551, 852
AluI AGCT 6 cut(s) 66, 166, 223, 455, 551, 852
Alw21I GWGCWC 3 cut(s) 553, 801, 854
Alw26I GTCTC 3 cut(s) 51, 127, 184
Alw44I GTGCAC 1 cut(s) 797
AlwI GGATC 3 cut(s) 227, 348, 655
Aor13HI TCCGGA 1 cut(s) 524
AoxI GGCC 1 cut(s) 424
ApaLI GTGCAC 1 cut(s) 797
ApeKI GCWGC 2 cut(s) 163, 242
ApoI RAATTY 2 cut(s) 265, 821
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 449, 670
AsuNHI GCTAGC 1 cut(s) 223
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 801
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 2 cut(s) 553, 854
BauI CACGAG 1 cut(s) 124
Bbv12I GWGCWC 3 cut(s) 553, 801, 854
BbvI GCAGC 2 cut(s) 175, 254
BccI CCATC 4 cut(s) 244, 319, 757, 787
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 3 cut(s) 51, 127, 184
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 6 cut(s) 63, 224, 348, 428, 434, 477
BfmI CTRYAG 1 cut(s) 133
BisI GCNGC 2 cut(s) 164, 243
BlsI GCNGC 2 cut(s) 165, 244
Bme1390I CCNGG 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 254
BmtI GCTAGC 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 329
BsaWI WCCGGW 2 cut(s) 524, 625
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 329
BseAI TCCGGA 1 cut(s) 524
BseBI CCWGG 1 cut(s) 184
BseGI GGATG 7 cut(s) 49, 235, 245, 330, 622, 700, 768
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 570
BseRI GAGGAG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 801
BseXI GCAGC 2 cut(s) 175, 254
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 3 cut(s) 553, 801, 854
BsiSI CCGG 2 cut(s) 525, 626
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 3 cut(s) 51, 127, 184
BsnI GGCC 1 cut(s) 426
Bsp1286I GDGCHC 3 cut(s) 553, 801, 854
Bsp13I TCCGGA 1 cut(s) 524
Bsp143I GATC 4 cut(s) 232, 340, 660, 682
BspACI CCGC 2 cut(s) 153, 227
BspANI GGCC 1 cut(s) 426
BspEI TCCGGA 1 cut(s) 524
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 295
BspOI GCTAGC 1 cut(s) 227
BspPI GGATC 3 cut(s) 227, 348, 655
BspT107I GGYRCC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 570
BssMI GATC 4 cut(s) 232, 340, 660, 682
BssSI CACGAG 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 178, 658
Bst6I CTCTTC 1 cut(s) 780
BstAPI GCANNNNNTGC 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 7 cut(s) 49, 235, 245, 330, 622, 700, 768
BstFNI CGCG 1 cut(s) 271
BstKTI GATC 4 cut(s) 235, 343, 663, 685
BstMAI GTCTC 3 cut(s) 51, 127, 184
BstMBI GATC 4 cut(s) 232, 340, 660, 682
BstMWI GCNNNNNNNGC 3 cut(s) 77, 452, 805
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 801
BstSNI TACGTA 1 cut(s) 202
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 175, 254
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 1 cut(s) 426
BtsCI GGATG 7 cut(s) 49, 235, 245, 330, 622, 700, 768
BtsI GCAGTG 3 cut(s) 42, 75, 741
BtsIMutI CAGTG 3 cut(s) 42, 75, 741
Cac8I GCNNGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 203
CviAII CATG 5 cut(s) 57, 169, 442, 578, 742
CviQI GTAC 1 cut(s) 203
DpnI GATC 4 cut(s) 234, 342, 662, 684
DpnII GATC 4 cut(s) 232, 340, 660, 682
Eam1104I CTCTTC 1 cut(s) 780
EarI CTCTTC 1 cut(s) 780
Ecl136II GAGCTC 2 cut(s) 551, 852
Eco105I TACGTA 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 553, 854
Eco47I GGWCC 1 cut(s) 371
Eco53kI GAGCTC 2 cut(s) 551, 852
Eco57I CTGAAG 2 cut(s) 90, 468
EcoICRI GAGCTC 2 cut(s) 551, 852
EcoRI GAATTC 2 cut(s) 265, 821
EcoRII CCWGG 1 cut(s) 182
EcoT38I GRGCYC 2 cut(s) 553, 854
FaeI CATG 5 cut(s) 60, 172, 445, 581, 745
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 5 cut(s) 56, 168, 441, 577, 741
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 164, 243
FokI GGATG 7 cut(s) 36, 232, 242, 337, 609, 707, 775
FriOI GRGCYC 2 cut(s) 553, 854
Fsp4HI GCNGC 2 cut(s) 164, 243
FspBI CTAG 6 cut(s) 63, 224, 348, 428, 434, 477
GluI GCNGC 2 cut(s) 164, 243
HaeIII GGCC 1 cut(s) 426
HapII CCGG 2 cut(s) 525, 626
Hin1II CATG 5 cut(s) 60, 172, 445, 581, 745
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 3 cut(s) 138, 308, 413
HpaII CCGG 2 cut(s) 525, 626
HphI GGTGA 2 cut(s) 449, 670
Hpy166II GTNNAC 4 cut(s) 40, 133, 213, 799
Hpy188I TCNGA 6 cut(s) 281, 313, 418, 665, 687, 749
Hpy188III TCNNGA 4 cut(s) 348, 374, 472, 525
Hpy8I GTNNAC 4 cut(s) 40, 133, 213, 799
HpyAV CCTTC 5 cut(s) 63, 114, 259, 605, 729
HpyCH4III ACNGT 2 cut(s) 178, 658
HpyCH4IV ACGT 2 cut(s) 42, 201
HpyCH4V TGCA 8 cut(s) 35, 71, 119, 189, 575, 642, 734, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 452, 805
HpySE526I ACGT 2 cut(s) 42, 201
Hsp92II CATG 5 cut(s) 60, 172, 445, 581, 745
Kpn2I TCCGGA 1 cut(s) 524
Kzo9I GATC 4 cut(s) 232, 340, 660, 682
LpnPI CCDG 8 cut(s) 169, 196, 387, 393, 538, 552, 639, 794
Lsp1109I GCAGC 2 cut(s) 175, 254
LweI GCATC 1 cut(s) 254
MaeI CTAG 6 cut(s) 63, 224, 348, 428, 434, 477
MaeII ACGT 2 cut(s) 42, 201
MaeIII GTNAC 3 cut(s) 172, 437, 560
MalI GATC 4 cut(s) 234, 342, 662, 684
MbiI CCGCTC 1 cut(s) 155
MboI GATC 4 cut(s) 232, 340, 660, 682
MboII GAAGA 5 cut(s) 268, 298, 461, 797, 802
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 3 cut(s) 553, 801, 854
MluCI AATT 4 cut(s) 265, 554, 703, 821
MmeI TCCRAC 1 cut(s) 762
MnlI CCTC 5 cut(s) 160, 315, 379, 501, 666
MroI TCCGGA 1 cut(s) 524
MseI TTAA 4 cut(s) 98, 219, 617, 856
MspI CCGG 2 cut(s) 525, 626
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 3 cut(s) 77, 452, 805
NdeII GATC 4 cut(s) 232, 340, 660, 682
NheI GCTAGC 1 cut(s) 223
NlaIII CATG 5 cut(s) 60, 172, 445, 581, 745
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 2 cut(s) 437, 560
PceI AGGCCT 1 cut(s) 426
PfeI GAWTC 3 cut(s) 138, 308, 413
PkrI GCNGC 2 cut(s) 165, 244
Ppu21I YACGTR 1 cut(s) 202
Psp124BI GAGCTC 2 cut(s) 553, 854
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 1 cut(s) 371
PsrI GAACNNNNNNTAC 2 cut(s) 722, 754
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SacI GAGCTC 2 cut(s) 553, 854
SaqAI TTAA 4 cut(s) 98, 219, 617, 856
SatI GCNGC 2 cut(s) 164, 243
Sau3AI GATC 4 cut(s) 232, 340, 660, 682
Sau96I GGNCC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 3 cut(s) 553, 801, 854
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 1 cut(s) 133
SinI GGWCC 1 cut(s) 371
SnaBI TACGTA 1 cut(s) 202
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 4 cut(s) 265, 554, 703, 821
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 2 cut(s) 153, 227
SspMI CTAG 6 cut(s) 63, 224, 348, 428, 434, 477
SstI GAGCTC 2 cut(s) 553, 854
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 2 cut(s) 178, 658
TaiI ACGT 2 cut(s) 45, 204
TaqI TCGA 3 cut(s) 306, 320, 506
TasI AATT 4 cut(s) 265, 554, 703, 821
TfiI GAWTC 3 cut(s) 138, 308, 413
Tru1I TTAA 4 cut(s) 98, 219, 617, 856
Tru9I TTAA 4 cut(s) 98, 219, 617, 856
TscAI CASTG 3 cut(s) 42, 82, 741
TseFI GTSAC 2 cut(s) 437, 560
TseI GCWGC 2 cut(s) 163, 242
Tsp45I GTSAC 2 cut(s) 437, 560
TspDTI ATGAA 6 cut(s) 42, 45, 624, 689, 711, 730
TspRI CASTG 3 cut(s) 42, 82, 741
VneI GTGCAC 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 2 cut(s) 265, 821
XbaI TCTAGA 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 6 cut(s) 63, 224, 348, 428, 434, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.