Rh5BG297100

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012206
Physical Location & Seq
Reverse (-)
38010322 .. 38012998
2677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG297100.1

Sequence Viewer

Length: 927 bp
ATGAGAGACAAACTGTCTTGTTTTAGTGAAAATGCAGTAAATTTGTCTCATCCTTCATGTTCTAGCTATGCAAACACTGCTTGTGTTTCTCCAAGTCTATCTCCTTCAGTCCAAAATGCAGTCACTTGTCTCTACAAAATCACTCTCTCCACCACTAAAAAGCAGTTCTTGGTCACAGTCACCTGGTGCAAGAACCACTATGCGCAAGGCTTGAGCATTAAGTTTGGTGATGATCCCTTAACATCCTTCAAACTCAACACCAATTCTCGCTTGTTTCGCAAGAAGAAAGGCACAAAAGTCTTTGAATCCCCCGAAAGTTCGAAGATGGAAATCATTTGGGATCTCTCCAAAGCCAAGTATGATGCTACTGGTCCTGAACCCGTTGATGGGTTTTACATTTTGGTCATGGTTGATTCAGAAATAGGCCTCATTCTAGGTGACATGGCTGAAGAAGCTATGACCAAGAAGTTCAAGACTAGTACCCCAGTTTCTAAAGTTTCTTTAATCTCAAGGCAAGAGCATTATTCAGGAGGTAGTACCCTCTACTCCACCAAAGCTCAATTCAGTGATACTGGAATTTCACATAACATTGTGATCAGATGTAGTGGAGAAAATGAAGGCTTGAAGCATCCAGTATTGTCTGTTTCAATTGATACGAAGACGGTGATTCGAGTAAAGAGGCTGCAGTGGAATTTTAGAGGAAACCAGACGATTTTTGTTGATGGGTTGCTGGTTGATCTGATGTGGGATGTTCATGACTGGTTCTTCAACAACCCTTCATCAAGATATGCGGTTTTCATGTTCAGAACAAGAAGTGGAATGGATAGCAGACTTTGGTTAGAAGAAAAGATGGTGCAGAAAGAACAGGAAAAAGTCGAATTCTCCTTGTTGATCTATGCATGTTCTATGAATACAAACAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

308

Amino Acids

34.86

Weight (kDa)

8.93

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 37 - 301 5e-90 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27770
fragaria_vesca FvH4_3g24180
malus_domestica MD03G1135700.v1.1 MD11G1158200.v1.1
prunus_persica Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1
pyrus_communis pycom03g09160 pycom11g12850
rosa_chinensis RchiOBHm_Chr5g0043291
rosa_laevigata RLG00000034177
rosa_multiflora Rmu_sc0005936.1_g000006
rosa_roxburghii Rroxscaffold_1G00037530
rosa_rugosa Rorug05G0205100
rosa_samantha Rh5BG297100 Rh5CG326900 Rh5DG306700
rosa_wichuraiana Rw5G026880 Rw5G026950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 204
AciI CCGC 1 cut(s) 791
AclWI GGATC 2 cut(s) 227, 348
AcsI RAATTY 4 cut(s) 40, 576, 691, 878
AcuI CTGAAG 2 cut(s) 90, 468
AdeI CACNNNGTG 1 cut(s) 186
AfaI GTAC 2 cut(s) 481, 538
AfiI CCNNNNNNNGG 2 cut(s) 386, 387
AgsI TTSAA 6 cut(s) 250, 305, 472, 625, 648, 769
AhdI GACNNNNNGTC 1 cut(s) 13
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 3 cut(s) 66, 455, 557
AluI AGCT 3 cut(s) 66, 455, 557
Alw26I GTCTC 2 cut(s) 51, 134
AlwI GGATC 2 cut(s) 227, 348
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 682
ApoI RAATTY 4 cut(s) 40, 576, 691, 878
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 4 cut(s) 172, 239, 449, 676
AsuII TTCGAA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 665
BbvI GCAGC 1 cut(s) 669
BccI CCATC 4 cut(s) 319, 380, 716, 844
BciT130I CCWGG 1 cut(s) 184
BclI TGATCA 1 cut(s) 594
BcoDI GTCTC 2 cut(s) 51, 134
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 3 cut(s) 63, 434, 477
BfmI CTRYAG 1 cut(s) 683
BisI GCNGC 1 cut(s) 683
BlsI GCNGC 1 cut(s) 684
Bme1390I CCNGG 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 371
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 184
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 2 cut(s) 352, 637
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 665
Bpu14I TTCGAA 1 cut(s) 320
BpuEI CTTGAG 2 cut(s) 232, 493
BsaBI GATNNNNATC 1 cut(s) 329
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 387
Bse1I ACTGG 5 cut(s) 373, 485, 577, 632, 764
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 1 cut(s) 184
BseGI GGATG 4 cut(s) 49, 242, 628, 754
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 2 cut(s) 386, 387
BseNI ACTGG 5 cut(s) 373, 485, 577, 632, 764
BseXI GCAGC 1 cut(s) 669
BsgI GTGCAG 1 cut(s) 875
BshFI GGCC 1 cut(s) 426
BslI CCNNNNNNNGG 2 cut(s) 386, 387
BsmAI GTCTC 2 cut(s) 51, 134
BsnI GGCC 1 cut(s) 426
Bsp119I TTCGAA 1 cut(s) 320
Bsp143I GATC 5 cut(s) 232, 340, 594, 736, 891
BspACI CCGC 1 cut(s) 791
BspANI GGCC 1 cut(s) 426
BspHI TCATGA 1 cut(s) 754
BspMAI CTGCAG 1 cut(s) 687
BspPI GGATC 2 cut(s) 227, 348
BspT104I TTCGAA 1 cut(s) 320
BsrI ACTGG 5 cut(s) 373, 485, 577, 632, 764
BssMI GATC 5 cut(s) 232, 340, 594, 736, 891
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 15, 178, 664
BstAPI GCANNNNNTGC 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 320
BstF5I GGATG 4 cut(s) 49, 242, 628, 754
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 5 cut(s) 235, 343, 597, 739, 894
BstMAI GTCTC 2 cut(s) 51, 134
BstMBI GATC 5 cut(s) 232, 340, 594, 736, 891
BstMWI GCNNNNNNNGC 3 cut(s) 77, 276, 452
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 903
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 683
BstV1I GCAGC 1 cut(s) 669
BstV2I GAAGAC 1 cut(s) 665
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 1 cut(s) 426
BtsCI GGATG 4 cut(s) 49, 242, 628, 754
BtsI GCAGTG 2 cut(s) 75, 692
BtsIMutI CAGTG 4 cut(s) 75, 571, 692, 922
CciI TCATGA 1 cut(s) 754
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 371
CsiI ACCWGGT 1 cut(s) 182
Csp6I GTAC 2 cut(s) 480, 537
CviAII CATG 6 cut(s) 57, 406, 442, 755, 799, 900
CviJI RGCY 9 cut(s) 66, 210, 353, 426, 446, 455, 557, 621, 682
CviKI_1 RGCY 9 cut(s) 66, 210, 353, 426, 446, 455, 557, 621, 682
CviQI GTAC 2 cut(s) 480, 537
DpnI GATC 5 cut(s) 234, 342, 596, 738, 893
DpnII GATC 5 cut(s) 232, 340, 594, 736, 891
DraIII CACNNNGTG 1 cut(s) 186
DriI GACNNNNNGTC 1 cut(s) 13
Eam1105I GACNNNNNGTC 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 2 cut(s) 90, 468
EcoRI GAATTC 1 cut(s) 878
EcoRII CCWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 901
FaeI CATG 6 cut(s) 60, 409, 445, 758, 802, 903
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 6 cut(s) 56, 405, 441, 754, 798, 899
FbaI TGATCA 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 683
FokI GGATG 4 cut(s) 36, 229, 615, 761
Fsp4HI GCNGC 1 cut(s) 683
FspBI CTAG 3 cut(s) 63, 434, 477
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 683
HaeIII GGCC 1 cut(s) 426
HhaI GCGC 1 cut(s) 205
Hin1II CATG 6 cut(s) 60, 409, 445, 758, 802, 903
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 3 cut(s) 305, 413, 667
HphI GGTGA 4 cut(s) 172, 239, 449, 676
Hpy188I TCNGA 4 cut(s) 418, 599, 741, 806
Hpy188III TCNNGA 5 cut(s) 374, 472, 528, 755, 783
HpyAV CCTTC 5 cut(s) 63, 114, 256, 611, 786
HpyCH4III ACNGT 3 cut(s) 15, 178, 664
HpyCH4V TGCA 7 cut(s) 35, 71, 119, 189, 685, 856, 899
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 276, 452
Hsp92II CATG 6 cut(s) 60, 409, 445, 758, 802, 903
HspAI GCGC 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 5 cut(s) 232, 340, 594, 736, 891
Lsp1109I GCAGC 1 cut(s) 669
LweI GCATC 2 cut(s) 352, 637
MabI ACCWGGT 1 cut(s) 182
MaeI CTAG 3 cut(s) 63, 434, 477
MaeIII GTNAC 4 cut(s) 121, 172, 178, 437
MalI GATC 5 cut(s) 234, 342, 596, 738, 893
MboI GATC 5 cut(s) 232, 340, 594, 736, 891
MboII GAAGA 6 cut(s) 295, 334, 461, 670, 757, 854
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 1 cut(s) 340
MluCI AATT 7 cut(s) 40, 262, 560, 576, 648, 691, 878
MnlI CCTC 5 cut(s) 437, 524, 551, 672, 692
Mph1103I ATGCAT 1 cut(s) 901
MseI TTAA 3 cut(s) 219, 239, 503
MspR9I CCNGG 1 cut(s) 184
MunI CAATTG 1 cut(s) 648
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 77, 276, 452
NdeII GATC 5 cut(s) 232, 340, 594, 736, 891
NlaIII CATG 6 cut(s) 60, 409, 445, 758, 802, 903
NmuCI GTSAC 4 cut(s) 121, 172, 178, 437
NsbI TGCGCA 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 901
NspI RCATGY 1 cut(s) 903
NspV TTCGAA 1 cut(s) 320
PagI TCATGA 1 cut(s) 754
PceI AGGCCT 1 cut(s) 426
PfeI GAWTC 3 cut(s) 305, 413, 667
PkrI GCNGC 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspPI GGNCC 1 cut(s) 371
PstI CTGCAG 1 cut(s) 687
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 2 cut(s) 481, 538
RsaNI GTAC 2 cut(s) 480, 537
SaqAI TTAA 3 cut(s) 219, 239, 503
SatI GCNGC 1 cut(s) 683
Sau3AI GATC 5 cut(s) 232, 340, 594, 736, 891
Sau96I GGNCC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 184
SetI ASST 6 cut(s) 68, 185, 439, 457, 535, 559
SexAI ACCWGGT 1 cut(s) 182
SfaNI GCATC 2 cut(s) 352, 637
SfcI CTRYAG 1 cut(s) 683
SfuI TTCGAA 1 cut(s) 320
SinI GGWCC 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 211, 508
SmoI CTYRAG 2 cut(s) 211, 508
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 7 cut(s) 40, 262, 560, 576, 648, 691, 878
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 1 cut(s) 791
SspMI CTAG 3 cut(s) 63, 434, 477
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 3 cut(s) 15, 178, 664
TaqI TCGA 3 cut(s) 320, 670, 876
TasI AATT 7 cut(s) 40, 262, 560, 576, 648, 691, 878
TfiI GAWTC 3 cut(s) 305, 413, 667
Tru1I TTAA 3 cut(s) 219, 239, 503
Tru9I TTAA 3 cut(s) 219, 239, 503
TscAI CASTG 3 cut(s) 82, 571, 692
TseFI GTSAC 4 cut(s) 121, 172, 178, 437
TseI GCWGC 1 cut(s) 682
Tsp45I GTSAC 4 cut(s) 121, 172, 178, 437
TspDTI ATGAA 6 cut(s) 45, 630, 743, 768, 787, 923
TspRI CASTG 3 cut(s) 82, 571, 692
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 4 cut(s) 40, 576, 691, 878
XceI RCATGY 1 cut(s) 903
XspI CTAG 3 cut(s) 63, 434, 477
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.