Prupe.6G120000_v2.0.a1

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012206
Physical Location & Seq
Forward (+)
8902774 .. 8904797
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G120000.3

Sequence Viewer

Length: 906 bp
ATGAGAGACAAAATTTCTTGTTTTAGTGAAAATGCAGTAAATATTTCTCATCCTTCATGTTCTAGCTATGCAAACACTGCTTGTGTTTCTCCAAAGTTAACTCCTTCTGTCCAAAATGCAGTCTCATGTGTCTACAAAATCACTCTCTCCACTAAAAAGCAGTTCTTGGTCACAGTCTCCTGGTGCAAAAACCACTATGCACAGGGCTTAACCATTAAGTTTGGTGATGATCCAACAGCATGCTTCAAATTGAACATGAATTCGCGTCTGTTCCGGAAGAAGAAAGGCACCAAAGTCCTCGAATCGGATAATTCGAAGATGGAAATCTTTTGGGATCTGTCCAAAGCTAAGTATGATACTAGTGGTCCCGAACCAGTTGATGCTTTTTATATCCTGGTCATGGTTGACTCAGAAATAGGCCTAATTCTAGGTGACATGGCTGAAGAAGCTGTAGCCAAGAAGTTCAAGACTAGTGCAACCCCTGTTGCTAAGGTTTCTTTGGTTTCAAGGCAAGAGCATTGTTCAGGAAATGACCTTTATTCCACCAAGGCTCAATTCAGTGACACAGGCATTGTACATGACATTTTGATCAGATGCAGTGGAGAAAAAGATGGCTTAAAGCATCCGGTTTTATCAGTTTCCATCGACACAAAGACGGTCATTCGCGTAAAGAGGCTGCAGTGGAATTTTAGAGGCAATCAGACAATTTTTTTAGATGGGTTGCTGGTTGATCTGATGTGGGATGTTCATAACTGGTTCTTCAATCCTTCATCAAGGTATGCAGTGTTCATGTTCAGAACAAGAAGTGGAATGGATAGCAGGCTGTGGTTGGAAGAGAAGTTGGTGCAGAAGGAGCAGGACAGAGTTGAATTCTCCTTGTTGATCTATGCCTGTAAGAGCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

302

Amino Acids

34.05

Weight (kDa)

8.94

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27770
fragaria_vesca FvH4_3g24180
malus_domestica MD03G1135700.v1.1 MD11G1158200.v1.1
prunus_persica Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1 Prupe.6G120000_v2.0.a1
pyrus_communis pycom03g09160 pycom11g12850
rosa_chinensis RchiOBHm_Chr5g0043291
rosa_laevigata RLG00000034177
rosa_multiflora Rmu_sc0005936.1_g000006
rosa_roxburghii Rroxscaffold_1G00037530
rosa_rugosa Rorug05G0205100
rosa_samantha Rh5BG297100 Rh5CG326900 Rh5DG306700
rosa_wichuraiana Rw5G026880 Rw5G026950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 132
AccII CGCG 2 cut(s) 265, 666
AccIII TCCGGA 1 cut(s) 273
AclWI GGATC 2 cut(s) 224, 342
AcsI RAATTY 4 cut(s) 12, 259, 685, 869
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 1 cut(s) 576
AfiI CCNNNNNNNGG 2 cut(s) 304, 400
AgsI TTSAA 6 cut(s) 247, 253, 466, 507, 763, 869
AhlI ACTAGT 2 cut(s) 359, 470
AjnI CCWGG 2 cut(s) 179, 393
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AluBI AGCT 4 cut(s) 66, 347, 449, 900
AluI AGCT 4 cut(s) 66, 347, 449, 900
Alw21I GWGCWC 1 cut(s) 902
Alw26I GTCTC 2 cut(s) 127, 181
AlwI GGATC 2 cut(s) 224, 342
Aor13HI TCCGGA 1 cut(s) 273
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 1 cut(s) 676
ApoI RAATTY 4 cut(s) 12, 259, 685, 869
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 236, 443
AsuII TTCGAA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 902
Bbv12I GWGCWC 1 cut(s) 902
BbvI GCAGC 1 cut(s) 663
BccI CCATC 4 cut(s) 313, 605, 650, 710
BciT130I CCWGG 2 cut(s) 181, 395
BclI TGATCA 1 cut(s) 588
BcoDI GTCTC 2 cut(s) 127, 181
BcuI ACTAGT 2 cut(s) 359, 470
BfaI CTAG 4 cut(s) 63, 360, 428, 471
BfmI CTRYAG 2 cut(s) 450, 677
BisI GCNGC 1 cut(s) 677
BlsI GCNGC 1 cut(s) 678
Bme1390I CCNGG 2 cut(s) 181, 395
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 289, 367
BmrFI CCNGG 2 cut(s) 181, 395
BmsI GCATC 3 cut(s) 370, 584, 631
Bpu10I CCTNAGC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 546
BsaWI WCCGGW 2 cut(s) 273, 625
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 400
Bse1I ACTGG 2 cut(s) 374, 758
Bse8I GATNNNNATC 1 cut(s) 323
BseAI TCCGGA 1 cut(s) 273
BseBI CCWGG 2 cut(s) 181, 395
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 3 cut(s) 49, 622, 748
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 2 cut(s) 304, 400
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 2 cut(s) 374, 758
BseXI GCAGC 1 cut(s) 663
BsgI GTGCAG 1 cut(s) 866
Bsh1236I CGCG 2 cut(s) 265, 666
BshFI GGCC 1 cut(s) 420
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 902
BsiSI CCGG 2 cut(s) 274, 626
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 304, 400
BsmAI GTCTC 2 cut(s) 127, 181
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 1 cut(s) 420
Bsp119I TTCGAA 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 902
Bsp13I TCCGGA 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 574
Bsp143I GATC 5 cut(s) 229, 334, 588, 730, 882
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 1 cut(s) 422
BspEI TCCGGA 1 cut(s) 273
BspFNI CGCG 2 cut(s) 265, 666
BspLI GGNNCC 2 cut(s) 289, 367
BspMAI CTGCAG 1 cut(s) 681
BspPI GGATC 2 cut(s) 224, 342
BspT104I TTCGAA 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 574
BsrI ACTGG 2 cut(s) 374, 758
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 5 cut(s) 229, 334, 588, 730, 882
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 2 cut(s) 181, 395
Bst4CI ACNGT 2 cut(s) 175, 658
Bst6I CTCTTC 1 cut(s) 828
BstAPI GCANNNNNTGC 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 574
BstBI TTCGAA 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 241, 821
BstDEI CTNAG 3 cut(s) 348, 409, 489
BstF5I GGATG 3 cut(s) 49, 622, 748
BstFNI CGCG 2 cut(s) 265, 666
BstKTI GATC 5 cut(s) 232, 337, 591, 733, 885
BstMAI GTCTC 2 cut(s) 127, 181
BstMBI GATC 5 cut(s) 229, 334, 588, 730, 882
BstMWI GCNNNNNNNGC 3 cut(s) 77, 446, 853
BstNI CCWGG 2 cut(s) 181, 395
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 179, 393
BstSFI CTRYAG 2 cut(s) 450, 677
BstUI CGCG 2 cut(s) 265, 666
BstV1I GCAGC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 1 cut(s) 420
BtsCI GGATG 3 cut(s) 49, 622, 748
BtsI GCAGTG 4 cut(s) 75, 604, 686, 789
BtsIMutI CAGTG 5 cut(s) 75, 565, 604, 686, 789
Cac8I GCNNGC 2 cut(s) 241, 821
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 575
CviAII CATG 8 cut(s) 57, 126, 240, 256, 400, 436, 578, 790
CviQI GTAC 1 cut(s) 575
DdeI CTNAG 3 cut(s) 348, 409, 489
DpnI GATC 5 cut(s) 231, 336, 590, 732, 884
DpnII GATC 5 cut(s) 229, 334, 588, 730, 882
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Ecl136II GAGCTC 1 cut(s) 900
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 902
Eco47I GGWCC 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 900
Eco57I CTGAAG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 900
EcoRI GAATTC 2 cut(s) 259, 869
EcoRII CCWGG 2 cut(s) 179, 393
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 902
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 8 cut(s) 60, 129, 243, 259, 403, 439, 581, 793
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 351
FatI CATG 8 cut(s) 56, 125, 239, 255, 399, 435, 577, 789
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 677
FokI GGATG 3 cut(s) 36, 609, 755
FriOI GRGCYC 1 cut(s) 902
Fsp4HI GCNGC 1 cut(s) 677
FspBI CTAG 4 cut(s) 63, 360, 428, 471
GluI GCNGC 1 cut(s) 677
HaeIII GGCC 1 cut(s) 420
HapII CCGG 2 cut(s) 274, 626
HgaI GACGC 1 cut(s) 254
Hin1II CATG 8 cut(s) 60, 129, 243, 259, 403, 439, 581, 793
HincII GTYRAC 2 cut(s) 99, 406
HindII GTYRAC 2 cut(s) 99, 406
HinfI GANTC 2 cut(s) 302, 407
HpaI GTTAAC 1 cut(s) 99
HpaII CCGG 2 cut(s) 274, 626
HphI GGTGA 2 cut(s) 236, 443
Hpy166II GTNNAC 3 cut(s) 99, 133, 406
Hpy188I TCNGA 6 cut(s) 307, 412, 593, 702, 735, 797
Hpy188III TCNNGA 4 cut(s) 274, 368, 466, 525
Hpy8I GTNNAC 3 cut(s) 99, 133, 406
HpyAV CCTTC 4 cut(s) 63, 114, 777, 844
HpyCH4III ACNGT 2 cut(s) 175, 658
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 446, 853
HpyF3I CTNAG 3 cut(s) 348, 409, 489
Hsp92II CATG 8 cut(s) 60, 129, 243, 259, 403, 439, 581, 793
Kpn2I TCCGGA 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 99
Kzo9I GATC 5 cut(s) 229, 334, 588, 730, 882
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 1 cut(s) 663
LweI GCATC 3 cut(s) 370, 584, 631
MaeI CTAG 4 cut(s) 63, 360, 428, 471
MaeIII GTNAC 3 cut(s) 169, 431, 560
MalI GATC 5 cut(s) 231, 336, 590, 732, 884
MboI GATC 5 cut(s) 229, 334, 588, 730, 882
MboII GAAGA 6 cut(s) 289, 292, 328, 455, 751, 845
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 902
MluCI AATT 9 cut(s) 12, 248, 259, 310, 423, 554, 685, 705, 869
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 257, 810
MnlI CCTC 3 cut(s) 308, 666, 686
MroI TCCGGA 1 cut(s) 273
MseI TTAA 4 cut(s) 98, 209, 216, 617
MspI CCGG 2 cut(s) 274, 626
MspR9I CCNGG 2 cut(s) 181, 395
MvaI CCWGG 2 cut(s) 181, 395
MvnI CGCG 2 cut(s) 265, 666
MwoI GCNNNNNNNGC 3 cut(s) 77, 446, 853
NdeII GATC 5 cut(s) 229, 334, 588, 730, 882
NlaIII CATG 8 cut(s) 60, 129, 243, 259, 403, 439, 581, 793
NlaIV GGNNCC 2 cut(s) 289, 367
NmuCI GTSAC 3 cut(s) 169, 431, 560
NspI RCATGY 1 cut(s) 243
NspV TTCGAA 1 cut(s) 314
PaeI GCATGC 1 cut(s) 243
PceI AGGCCT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 678
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 902
Psp6I CCWGG 2 cut(s) 179, 393
PspGI CCWGG 2 cut(s) 179, 393
PspN4I GGNNCC 2 cut(s) 289, 367
PspPI GGNCC 1 cut(s) 365
PsrI GAACNNNNNNTAC 2 cut(s) 770, 802
PstI CTGCAG 1 cut(s) 681
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 576
RsaNI GTAC 1 cut(s) 575
SacI GAGCTC 1 cut(s) 902
SaqAI TTAA 4 cut(s) 98, 209, 216, 617
SatI GCNGC 1 cut(s) 677
Sau3AI GATC 5 cut(s) 229, 334, 588, 730, 882
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 181, 395
SduI GDGCHC 1 cut(s) 902
SetI ASST 8 cut(s) 68, 349, 433, 451, 495, 537, 779, 902
SfaNI GCATC 3 cut(s) 370, 584, 631
SfcI CTRYAG 2 cut(s) 450, 677
SfuI TTCGAA 1 cut(s) 314
SinI GGWCC 1 cut(s) 365
SpeI ACTAGT 2 cut(s) 359, 470
SphI GCATGC 1 cut(s) 243
Sse9I AATT 9 cut(s) 12, 248, 259, 310, 423, 554, 685, 705, 869
SseBI AGGCCT 1 cut(s) 420
SspI AATATT 1 cut(s) 43
SspMI CTAG 4 cut(s) 63, 360, 428, 471
SstI GAGCTC 1 cut(s) 902
StuI AGGCCT 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 179, 393
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 2 cut(s) 175, 658
TaqI TCGA 3 cut(s) 300, 314, 645
TasI AATT 9 cut(s) 12, 248, 259, 310, 423, 554, 685, 705, 869
TatI WGTACW 1 cut(s) 574
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 4 cut(s) 98, 209, 216, 617
Tru9I TTAA 4 cut(s) 98, 209, 216, 617
TscAI CASTG 5 cut(s) 82, 565, 604, 686, 789
TseFI GTSAC 3 cut(s) 169, 431, 560
TseI GCWGC 1 cut(s) 676
Tsp45I GTSAC 3 cut(s) 169, 431, 560
TspDTI ATGAA 5 cut(s) 45, 272, 737, 759, 778
TspRI CASTG 5 cut(s) 82, 565, 604, 686, 789
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 4 cut(s) 12, 259, 685, 869
XceI RCATGY 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 4 cut(s) 63, 360, 428, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.