Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005837

Physical Location & Seq

Genomic Coordinates Reverse (-)

11849647 .. 11851457

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGTCTGCAACTAGGTCTACATTTCTAGGCTCCATCTTCAGAACCGCTAAAGCACGAATTTTGATCTCACCCATCGCTAGACGCTCTCTCCCAAGCCCTAATTTCACTTCCTCGCGCTTCCACACTTCTTCTTCTCTTCGTCAGTCTCGAATCGAAGGTTCTATTCCAAGAAGTTTTCTTCCGAGCATCCATGTACGATTTCATAGTGTTAGTGCTTCCACTTGGTTCAGTTCTCGACGAACCTCTTCTCAAGGTCGATTAGCATCTGTTTCCATGTATATACAATACTCAACTTCAGTCCCAACACGTTCACTTAGAAGGAGAATCAGCAATAGAAAGAAATCGAGTGCAAAACCAATCCTTAATGTTTCAAAGTTTCATGAAACGATATCAAAGCTTCCACCAAGATTCACCCCTGAAGAACTAGCTGATGCTATAACTCTTGAAGAAGACCCGTTTCTGTGTTTCCATCTCTTTAACTGGGCATCGCAACAGCCGAGGTTTACGCATGAGAATTGCTCTTACCATATCGCGATAAGGAAGCTCGGTGCTGCGAAAATGTATCAAGAAATGGATGATATTGTGAACCAAGTGCTCTCGGTTCGTCATATTGGTAACGAGAATCTTTACAATTCGATCATCTTCTATTTCACGAAAGCCGGGAAGTTGATACGCGCTGTGAATATATTTAGACATATGGTGACTAGTAAGAACTTGGAATGTAGACCAACGATTAGAACGTATCATATTCTTTTCAAAGCCTTGTTGGGTAGAGGTAACAACTCTTACATAAACCATGTGTATATGGAGACAGTAAGATCTTTGTTTAGGCAAATGGTGGATAGCGGTATTGAACCAGACGTATTCGCTTTGAACTGTTTGGTTAAAGGTTACGTGCTCTCGCTTCACGTCAATGATGCACTTAGGATATTTCATCAGATGAGTGTGGTTTACGATTGTGAACCGAATTCGTTTACTTATGATTATCTAATACATGGATTATGTGCTCAAGGTAGGACCATTAATGCTAGAGAATTGCTTAGTGAGATGAAAGGAAAAGGCTTTGTTCCTAATGGGAAATCTTATAACTCTCTGGTTAATGCTTTTGCGCTTAGCGGTGAGATTGACGATGCAGTGAAATGTTTGTGGGAGATGATTGAGAATGGTCGTGTGGTTGATTTTATTAGCTATAGAACACTAGTTGATGAGAGTTGTAGGAAAGGGAAGTATGATGAAGCGACGAGATTGTTGGAGATGTTGCGAGAGAAACAGCTTGTGGATAGAGATTCTTATGATAAGCTTGTGAATGTTCTTCACAAGGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

442

Amino Acids

50.7

Weight (kDa)

9.66

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	209 - 255	7.9e-06	PPR repeat family
PPR_3	PF13812	274 - 332	2.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	286 - 335	1.8e-10	PPR repeat family
PPR_1	PF12854	319 - 351	2.5e-08	PPR repeat
PPR_2	PF13041	322 - 370	1.7e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27800
fragaria_vesca	FvH4_3g33090 FvH4_3g33090
malus_domestica	MD03G1104000.v1.1 MD11G1131200.v1.1
prunus_persica	Prupe.6G095500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060431 RchiOBHm_Chr7g0223121 RchiOBHm_Chr7g0223131
rosa_laevigata	RLG00000001999 RLG00000002000 RLG00000035363
rosa_multiflora	Rmu_sc0002192.1_g000036 Rmu_sc0002608.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020390 Rroxscaffold_3G00236080
rosa_rugosa	Rorug05G0329900 Rorug07G0213100
rosa_samantha	Rh5AG394700 Rh5BG406800 Rh5CG430600 Rh5DG421900 Rh7AG358300 Rh7BG346400 Rh7CG376600 Rh7DG353700
rosa_wichuraiana	Rw5G037120 Rw7G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1086
AccI	GTMKAC	2 cut(s)	17, 724
AccII	CGCG	3 cut(s)	115, 533, 675
AciI	CCGC	3 cut(s)	45, 846, 1116
AcsI	RAATTY	2 cut(s)	57, 967
AcuI	CTGAAG	3 cut(s)	22, 279, 438
AfaI	GTAC	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	5 cut(s)	372, 446, 757, 854, 874
AhlI	ACTAGT	2 cut(s)	704, 1198
AjiI	CACGTC	1 cut(s)	910
AluBI	AGCT	6 cut(s)	397, 428, 544, 1188, 1273, 1300
AluI	AGCT	6 cut(s)	397, 428, 544, 1188, 1273, 1300
Alw21I	GWGCWC	3 cut(s)	597, 900, 1009
Alw26I	GTCTC	2 cut(s)	150, 803
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	2 cut(s)	57, 967
AseI	ATTAAT	1 cut(s)	1023
Asp700I	GAANNNNTTC	1 cut(s)	244
AspLEI	GCGC	3 cut(s)	117, 677, 1111
AspS9I	GGNCC	1 cut(s)	1017
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	4 cut(s)	60, 403, 712, 1130
AvaII	GGWCC	1 cut(s)	1017
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	3 cut(s)	597, 900, 1009
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	3 cut(s)	41, 80, 477
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	2 cut(s)	150, 803
BcuI	ACTAGT	2 cut(s)	704, 1198
BfaI	CTAG	7 cut(s)	12, 26, 78, 425, 705, 1029, 1199
BfmI	CTRYAG	1 cut(s)	1189
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	1 cut(s)	552
BlpI	GCTNAGC	1 cut(s)	1112
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	1 cut(s)	661
Bme18I	GGWCC	1 cut(s)	1017
BmgBI	CACGTC	1 cut(s)	910
BmgT120I	GGNCC	1 cut(s)	1017
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	661
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	6 cut(s)	195, 272, 421, 494, 907, 1120
BmuI	ACTGGG	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
Bpu1102I	GCTNAGC	1 cut(s)	1112
BpuEI	CTTGAG	2 cut(s)	234, 993
BpuMI	CCSGG	1 cut(s)	661
BsaAI	YACGTR	1 cut(s)	895
BsaBI	GATNNNNATC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	497
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse1I	ACTGG	1 cut(s)	485
Bse8I	GATNNNNATC	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	2 cut(s)	186, 580
BseJI	GATNNNNATC	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	538
Bsh1236I	CGCG	3 cut(s)	115, 533, 675
BsiHKAI	GWGCWC	3 cut(s)	597, 900, 1009
BsiSI	CCGG	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	150, 803
BsmFI	GGGAC	1 cut(s)	284
Bsp1286I	GDGCHC	3 cut(s)	597, 900, 1009
Bsp143I	GATC	3 cut(s)	63, 636, 818
Bsp1720I	GCTNAGC	1 cut(s)	1112
Bsp68I	TCGCGA	1 cut(s)	533
BspACI	CCGC	3 cut(s)	45, 846, 1116
BspFNI	CGCG	3 cut(s)	115, 533, 675
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	3 cut(s)	63, 636, 818
Bst4CI	ACNGT	2 cut(s)	814, 878
Bst6I	CTCTTC	2 cut(s)	141, 250
BstBAI	YACGTR	1 cut(s)	895
BstDEI	CTNAG	4 cut(s)	314, 923, 1040, 1112
BstF5I	GGATG	2 cut(s)	186, 580
BstFNI	CGCG	3 cut(s)	115, 533, 675
BstHHI	GCGC	3 cut(s)	117, 677, 1111
BstKTI	GATC	3 cut(s)	66, 639, 821
BstMAI	GTCTC	2 cut(s)	150, 803
BstMBI	GATC	3 cut(s)	63, 636, 818
BstSCI	CCNGG	1 cut(s)	659
BstSFI	CTRYAG	1 cut(s)	1189
BstUI	CGCG	3 cut(s)	115, 533, 675
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	818
BtgZI	GCGATG	2 cut(s)	58, 471
BtrI	CACGTC	1 cut(s)	910
BtsCI	GGATG	2 cut(s)	186, 580
BtsI	GCAGTG	1 cut(s)	1140
BtsIMutI	CAGTG	1 cut(s)	1140
BtuMI	TCGCGA	1 cut(s)	533
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	3 cut(s)	117, 677, 1111
Cfr13I	GGNCC	1 cut(s)	1017
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	6 cut(s)	191, 274, 380, 509, 797, 995
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	4 cut(s)	314, 923, 1040, 1112
DpnI	GATC	3 cut(s)	65, 638, 820
DpnII	GATC	3 cut(s)	63, 636, 818
Eam1104I	CTCTTC	2 cut(s)	141, 250
EarI	CTCTTC	2 cut(s)	141, 250
Eco32I	GATATC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	1017
Eco57I	CTGAAG	3 cut(s)	22, 279, 438
EcoRI	GAATTC	1 cut(s)	967
EcoRV	GATATC	1 cut(s)	390
FaeI	CATG	6 cut(s)	194, 277, 383, 512, 800, 998
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	6 cut(s)	190, 273, 379, 508, 796, 994
FauNDI	CATATG	1 cut(s)	696
FblI	GTMKAC	2 cut(s)	17, 724
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	2 cut(s)	173, 587
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	7 cut(s)	12, 26, 78, 425, 705, 1029, 1199
GlaI	GCGC	3 cut(s)	116, 676, 1110
GluI	GCNGC	1 cut(s)	552
HapII	CCGG	1 cut(s)	660
HgaI	GACGC	1 cut(s)	90
HhaI	GCGC	3 cut(s)	117, 677, 1111
Hin1II	CATG	6 cut(s)	194, 277, 383, 512, 800, 998
Hin6I	GCGC	3 cut(s)	115, 675, 1109
HinP1I	GCGC	3 cut(s)	115, 675, 1109
HindIII	AAGCTT	2 cut(s)	395, 1298
HinfI	GANTC	5 cut(s)	150, 324, 408, 622, 1286
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	4 cut(s)	60, 403, 712, 1130
Hpy166II	GTNNAC	8 cut(s)	18, 311, 504, 586, 725, 952, 962, 975
Hpy188I	TCNGA	3 cut(s)	41, 183, 939
Hpy188III	TCNNGA	7 cut(s)	147, 234, 380, 443, 532, 566, 652
Hpy8I	GTNNAC	8 cut(s)	18, 311, 504, 586, 725, 952, 962, 975
Hpy99I	CGWCG	2 cut(s)	240, 1243
HpyAV	CCTTC	2 cut(s)	149, 312
HpyCH4III	ACNGT	2 cut(s)	814, 878
HpyCH4IV	ACGT	5 cut(s)	307, 740, 861, 894, 909
HpyCH4V	TGCA	4 cut(s)	8, 350, 920, 1133
HpyF3I	CTNAG	4 cut(s)	314, 923, 1040, 1112
HpySE526I	ACGT	5 cut(s)	307, 740, 861, 894, 909
Hsp92II	CATG	6 cut(s)	194, 277, 383, 512, 800, 998
HspAI	GCGC	3 cut(s)	115, 675, 1109
Kzo9I	GATC	3 cut(s)	63, 636, 818
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	5 cut(s)	429, 466, 673, 870, 1079
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	6 cut(s)	195, 272, 421, 494, 907, 1120
MaeI	CTAG	7 cut(s)	12, 26, 78, 425, 705, 1029, 1199
MaeII	ACGT	5 cut(s)	307, 740, 861, 894, 909
MaeIII	GTNAC	4 cut(s)	614, 700, 776, 890
MalI	GATC	3 cut(s)	65, 638, 820
MboI	GATC	3 cut(s)	63, 636, 818
MflI	RGATCY	1 cut(s)	818
MhlI	GDGCHC	3 cut(s)	597, 900, 1009
MluCI	AATT	6 cut(s)	57, 100, 514, 631, 967, 1034
MmeI	TCCRAC	1 cut(s)	1230
MnlI	CCTC	4 cut(s)	121, 253, 492, 767
MroXI	GAANNNNTTC	1 cut(s)	244
MseI	TTAA	5 cut(s)	363, 477, 885, 1023, 1098
MslI	CAYNNNNRTG	1 cut(s)	912
MspI	CCGG	1 cut(s)	660
MspR9I	CCNGG	1 cut(s)	661
MvnI	CGCG	3 cut(s)	115, 533, 675
NciI	CCSGG	1 cut(s)	661
NdeI	CATATG	1 cut(s)	696
NdeII	GATC	3 cut(s)	63, 636, 818
NlaIII	CATG	6 cut(s)	194, 277, 383, 512, 800, 998
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	700
NruI	TCGCGA	1 cut(s)	533
PagI	TCATGA	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	3 cut(s)	145, 494, 737
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	5 cut(s)	150, 324, 408, 622, 1286
PkrI	GCNGC	1 cut(s)	553
Ppu21I	YACGTR	1 cut(s)	895
PshBI	ATTAAT	1 cut(s)	1023
PsiI	TTATAA	1 cut(s)	1086
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	1017
PsuI	RGATCY	1 cut(s)	818
RruI	TCGCGA	1 cut(s)	533
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	912
SaqAI	TTAA	5 cut(s)	363, 477, 885, 1023, 1098
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	3 cut(s)	63, 636, 818
Sau96I	GGNCC	1 cut(s)	1017
ScrFI	CCNGG	1 cut(s)	661
SduI	GDGCHC	3 cut(s)	597, 900, 1009
SfaNI	GCATC	6 cut(s)	195, 272, 421, 494, 907, 1120
SfcI	CTRYAG	1 cut(s)	1189
SinI	GGWCC	1 cut(s)	1017
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	2 cut(s)	249, 1008
SmoI	CTYRAG	2 cut(s)	249, 1008
SpeI	ACTAGT	2 cut(s)	704, 1198
Sse9I	AATT	6 cut(s)	57, 100, 514, 631, 967, 1034
SsiI	CCGC	3 cut(s)	45, 846, 1116
SspMI	CTAG	7 cut(s)	12, 26, 78, 425, 705, 1029, 1199
StyD4I	CCNGG	1 cut(s)	659
TaaI	ACNGT	2 cut(s)	814, 878
TaiI	ACGT	5 cut(s)	310, 743, 864, 897, 912
TaqI	TCGA	6 cut(s)	148, 153, 235, 256, 344, 635
TasI	AATT	6 cut(s)	57, 100, 514, 631, 967, 1034
TfiI	GAWTC	5 cut(s)	150, 324, 408, 622, 1286
Tru1I	TTAA	5 cut(s)	363, 477, 885, 1023, 1098
Tru9I	TTAA	5 cut(s)	363, 477, 885, 1023, 1098
TscAI	CASTG	1 cut(s)	1140
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	6 cut(s)	191, 368, 396, 923, 1064, 1248
TspRI	CASTG	1 cut(s)	1140
VpaK11BI	GGWCC	1 cut(s)	1017
VspI	ATTAAT	1 cut(s)	1023
XapI	RAATTY	2 cut(s)	57, 967
XmiI	GTMKAC	2 cut(s)	17, 724
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	7 cut(s)	12, 26, 78, 425, 705, 1029, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.