Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005837

Physical Location & Seq

Genomic Coordinates Forward (+)

28482107 .. 28487238

Gene Structure 5132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGATTTCTCTTCGTGGACATTTCTGCAAGTGTAGTTGCATGCTCAGAAACCTCAATACCAAACTCTTTTATGAAAACCCTTTTCATCAATACTTGCCTAAGCTGAAGAGCATGGATGCTCATTCCTATAGTTTGAATCCCATTAATAGTACTCTGAGGCCAGTACACTCTTTGACTCAACCCCACTTTGACATAGTACCCAAAGTTGCTTCCACTGGATTTCTTGGTATTTATGAGCAATTTTCATTGCATAAGTTTTACTCATCCCCATCTCGATCTTTTAGAAGAAGAGAAAATAAAAGATTAGAATCCAGTAGAAAACCAACTCTTAATCAAGCCCAATTCCAAAAGTCTGTGTCCCAGTTGTTGCCTAGATTTACGCCTGAAGAACTGGGTGATATTATAACTAAGCAAGAAGATCCTCTTGTGTGTTTAGAGTTGTTCAATTGGGCATCCCAACAGTTGCGGTTCAAACATGATGTTAACAGTTATCACATTACAATAAAGAAACTTGGTGTGGCTAAGATGTACGAAGAGATGGATGACGTCGTCAACCAAGTGCTTGCTATGTCTCACATGGGTTCCGAGGCGCTGTTTAATTCGATTATATACTTTTTCACAGAAGCTCGGAAGTTGACTAGAGCTGTCAATATATTTAAACACATGAAGAATAGTAGAAACACGGACTGCAGACCTTCAGTTAGGACATACAATATTCTCTTTACTGCCTTTTTGAGTAGGGGATGTAATACCTACATAAATCACATGTATATGGAAACCATTAGATGTCTGTTTAGGCAAATGGTGAACGATGGGATTGAACCTGATATTTATACTTTGAATTCTATGATTAAGGGGTATGTTCTTTCCCTACATGTGAATGATGCACTTAGAGTATTCCATCAGATGGGTGTGGTCTATAACTGCCTGCCAAACACATTTTCCTATGATTATCTCATCCATGGATTATGTGCTCAAGGCCGAACAAACAATGCTAAGCAGTTGTGCGATGAAATGAAGACTAAAGGGTTCATTCTGAGTAGTAAATCTTACAACTCACTTGTGAATGCTTTGGCTCTTAGTGGAGAGATTGAGGAGGCAGTGAAGTATTTGTGGGAGATGGTTGAGAAGCGGAGGTCAACTGAATTCATTACTTATAAGACGGTACTTGATGAATTCTGCAGACAAGGACTGGTTGGACAAGCAATGAAGTTGCTAAAAGAGTTTCAAGAGAAAGACATTGTGAGCGGGCATGCTTACAGGAAGCTCCGATATGTGCTTGAAGATGACTATGGAGATTCTGTTTCCCATACTCGATTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

442

Amino Acids

51.35

Weight (kDa)

9.16

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	198 - 244	2.9e-06	PPR repeat family
PPR_2	PF13041	252 - 287	4.7e-06	PPR repeat family
PPR_3	PF13812	264 - 321	3.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	281 - 324	2.1e-07	PPR repeat family
PPR_1	PF12854	308 - 340	8.1e-09	PPR repeat
PPR_2	PF13041	311 - 359	9e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27800
fragaria_vesca	FvH4_3g33090 FvH4_3g33090
malus_domestica	MD03G1104000.v1.1 MD11G1131200.v1.1
prunus_persica	Prupe.6G095500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060431 RchiOBHm_Chr7g0223121 RchiOBHm_Chr7g0223131
rosa_laevigata	RLG00000001999 RLG00000002000 RLG00000035363
rosa_multiflora	Rmu_sc0002192.1_g000036 Rmu_sc0002608.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020390 Rroxscaffold_3G00236080
rosa_rugosa	Rorug05G0329900 Rorug07G0213100
rosa_samantha	Rh5AG394700 Rh5BG406800 Rh5CG430600 Rh5DG421900 Rh7AG358300 Rh7BG346400 Rh7CG376600 Rh7DG353700
rosa_wichuraiana	Rw5G037120 Rw7G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	404, 1158
AatII	GACGTC	1 cut(s)	549
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccBSI	CCGCTC	1 cut(s)	1248
AciI	CCGC	3 cut(s)	466, 1132, 1248
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	841, 1145, 1175
AcuI	CTGAAG	3 cut(s)	125, 405, 681
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	5 cut(s)	151, 165, 198, 530, 1167
AfiI	CCNNNNNNNGG	1 cut(s)	907
AflIII	ACRYGT	2 cut(s)	765, 874
AgsI	TTSAA	7 cut(s)	136, 445, 472, 821, 841, 1229, 1283
AjuI	GAANNNNNNNTTGG	2 cut(s)	925, 957
AluBI	AGCT	4 cut(s)	103, 626, 644, 1267
AluI	AGCT	4 cut(s)	103, 626, 644, 1267
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	2 cut(s)	158, 979
ApoI	RAATTY	3 cut(s)	841, 1145, 1175
AseI	ATTAAT	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	407, 817
BbsI	GAAGAC	1 cut(s)	1025
Bbv12I	GWGCWC	1 cut(s)	976
BccI	CCATC	6 cut(s)	277, 532, 806, 901, 909, 1114
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	2 cut(s)	372, 639
BfmI	CTRYAG	3 cut(s)	127, 688, 1180
BfoI	RGCGCY	1 cut(s)	593
BlpI	GCTNAGC	1 cut(s)	996
BmcAI	AGTACT	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	583
BmrI	ACTGGG	2 cut(s)	355, 401
BmsI	GCATC	3 cut(s)	106, 461, 874
BmuI	ACTGGG	2 cut(s)	355, 401
BpiI	GAAGAC	1 cut(s)	1025
Bpu10I	CCTNAGC	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	1 cut(s)	960
BsaBI	GATNNNNATC	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	585, 961
BsaXI	ACNNNNNCTCC	2 cut(s)	1287, 1317
Bsc4I	CCNNNNNNNGG	1 cut(s)	907
Bse1I	ACTGG	6 cut(s)	161, 220, 312, 361, 396, 1197
Bse3DI	GCAATG	2 cut(s)	245, 1212
Bse8I	GATNNNNATC	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	585, 961
BseGI	GGATG	6 cut(s)	121, 263, 452, 547, 749, 957
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	907
BseMI	GCAATG	2 cut(s)	245, 1212
BseMII	CTCAG	3 cut(s)	58, 146, 1028
BseNI	ACTGG	6 cut(s)	161, 220, 312, 361, 396, 1197
BseRI	GAGGAG	1 cut(s)	1109
BshFI	GGCC	2 cut(s)	160, 981
BsiHKAI	GWGCWC	1 cut(s)	976
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	907
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	1072
BsnI	GGCC	2 cut(s)	160, 981
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp143I	GATC	2 cut(s)	275, 418
Bsp1720I	GCTNAGC	1 cut(s)	996
Bsp19I	CCATGG	1 cut(s)	961
BspACI	CCGC	3 cut(s)	466, 1132, 1248
BspANI	GGCC	2 cut(s)	160, 981
BspCNI	CTCAG	3 cut(s)	57, 147, 1029
BspLI	GGNNCC	1 cut(s)	583
BspMAI	CTGCAG	2 cut(s)	692, 1184
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	1248
BsrDI	GCAATG	2 cut(s)	245, 1212
BsrI	ACTGG	6 cut(s)	161, 220, 312, 361, 396, 1197
BssECI	CCNNGG	2 cut(s)	585, 961
BssMI	GATC	2 cut(s)	275, 418
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	961
Bst4CI	ACNGT	3 cut(s)	462, 488, 1165
Bst6I	CTCTTC	4 cut(s)	15, 101, 283, 528
BstACI	GRCGYC	1 cut(s)	546
BstC8I	GCNNGC	5 cut(s)	41, 564, 929, 1250, 1254
BstDEI	CTNAG	9 cut(s)	44, 99, 155, 408, 522, 890, 996, 1037, 1079
BstDSI	CCRYGG	1 cut(s)	961
BstF5I	GGATG	6 cut(s)	121, 263, 452, 547, 749, 957
BstH2I	RGCGCY	1 cut(s)	593
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	2 cut(s)	278, 421
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	2 cut(s)	275, 418
BstNSI	RCATGY	4 cut(s)	43, 769, 878, 1256
BstSFI	CTRYAG	3 cut(s)	127, 688, 1180
BstV2I	GAAGAC	1 cut(s)	1025
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	160, 981
BtgI	CCRYGG	1 cut(s)	961
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	6 cut(s)	121, 263, 452, 547, 749, 957
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	2 cut(s)	213, 1107
Cac8I	GCNNGC	5 cut(s)	41, 564, 929, 1250, 1254
CfoI	GCGC	1 cut(s)	592
Csp6I	GTAC	5 cut(s)	150, 164, 197, 529, 1166
CviAII	CATG	9 cut(s)	40, 112, 476, 577, 664, 766, 875, 962, 1253
CviJI	RGCY	9 cut(s)	103, 160, 338, 521, 626, 644, 981, 1076, 1267
CviKI_1	RGCY	9 cut(s)	103, 160, 338, 521, 626, 644, 981, 1076, 1267
CviQI	GTAC	5 cut(s)	150, 164, 197, 529, 1166
DdeI	CTNAG	9 cut(s)	44, 99, 155, 408, 522, 890, 996, 1037, 1079
DpnI	GATC	2 cut(s)	277, 420
DpnII	GATC	2 cut(s)	275, 418
DraI	TTTAAA	1 cut(s)	658
Eam1104I	CTCTTC	4 cut(s)	15, 101, 283, 528
EarI	CTCTTC	4 cut(s)	15, 101, 283, 528
Eco130I	CCWWGG	1 cut(s)	961
Eco57I	CTGAAG	3 cut(s)	125, 405, 681
EcoRI	GAATTC	3 cut(s)	841, 1145, 1175
EcoT14I	CCWWGG	1 cut(s)	961
ErhI	CCWWGG	1 cut(s)	961
FaeI	CATG	9 cut(s)	43, 115, 479, 580, 667, 769, 878, 965, 1256
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	9 cut(s)	39, 111, 475, 576, 663, 765, 874, 961, 1252
FauI	CCCGC	1 cut(s)	1241
FokI	GGATG	6 cut(s)	128, 250, 439, 554, 756, 944
FspBI	CTAG	2 cut(s)	372, 639
GlaI	GCGC	1 cut(s)	591
HaeII	RGCGCY	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	160, 981
HhaI	GCGC	1 cut(s)	592
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	9 cut(s)	43, 115, 479, 580, 667, 769, 878, 965, 1256
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HincII	GTYRAC	4 cut(s)	484, 553, 636, 1140
HindII	GTYRAC	4 cut(s)	484, 553, 636, 1140
HinfI	GANTC	4 cut(s)	136, 175, 308, 1298
HpaI	GTTAAC	1 cut(s)	484
HphI	GGTGA	2 cut(s)	407, 817
Hpy166II	GTNNAC	7 cut(s)	17, 166, 484, 553, 636, 808, 1140
Hpy188I	TCNGA	7 cut(s)	47, 156, 586, 630, 906, 1038, 1271
Hpy188III	TCNNGA	2 cut(s)	273, 1229
Hpy8I	GTNNAC	7 cut(s)	17, 166, 484, 553, 636, 808, 1140
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	1 cut(s)	705
HpyCH4III	ACNGT	3 cut(s)	462, 488, 1165
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	6 cut(s)	27, 39, 250, 690, 887, 1182
HpyF3I	CTNAG	9 cut(s)	44, 99, 155, 408, 522, 890, 996, 1037, 1079
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	9 cut(s)	43, 115, 479, 580, 667, 769, 878, 965, 1256
HspAI	GCGC	1 cut(s)	590
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	275, 418
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	1272
LweI	GCATC	3 cut(s)	106, 461, 874
MaeI	CTAG	2 cut(s)	372, 639
MaeII	ACGT	1 cut(s)	546
MalI	GATC	2 cut(s)	277, 420
MbiI	CCGCTC	1 cut(s)	1248
MboI	GATC	2 cut(s)	275, 418
MboII	GAAGA	9 cut(s)	118, 297, 300, 398, 428, 545, 679, 1030, 1295
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	7 cut(s)	239, 341, 445, 598, 841, 1145, 1175
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	1177
MnlI	CCTC	7 cut(s)	62, 150, 432, 580, 1087, 1090, 1128
MseI	TTAA	6 cut(s)	144, 330, 483, 597, 657, 852
MslI	CAYNNNNRTG	2 cut(s)	770, 879
MunI	CAATTG	1 cut(s)	445
Mva1269I	GAATGC	1 cut(s)	1072
NcoI	CCATGG	1 cut(s)	961
NdeII	GATC	2 cut(s)	275, 418
NlaIII	CATG	9 cut(s)	43, 115, 479, 580, 667, 769, 878, 965, 1256
NlaIV	GGNNCC	1 cut(s)	583
NspI	RCATGY	4 cut(s)	43, 769, 878, 1256
PaeI	GCATGC	2 cut(s)	43, 1256
PciI	ACATGT	2 cut(s)	765, 874
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	1072
PfeI	GAWTC	3 cut(s)	136, 308, 1298
PflFI	GACNNNGTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	907
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PscI	ACATGT	2 cut(s)	765, 874
PshBI	ATTAAT	1 cut(s)	144
PsiI	TTATAA	2 cut(s)	404, 1158
PspN4I	GGNNCC	1 cut(s)	583
PstI	CTGCAG	2 cut(s)	692, 1184
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	548
RsaI	GTAC	5 cut(s)	151, 165, 198, 530, 1167
RsaNI	GTAC	5 cut(s)	150, 164, 197, 529, 1166
RseI	CAYNNNNRTG	2 cut(s)	770, 879
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	6 cut(s)	144, 330, 483, 597, 657, 852
Sau3AI	GATC	2 cut(s)	275, 418
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	3 cut(s)	106, 461, 874
SfcI	CTRYAG	3 cut(s)	127, 688, 1180
SmiMI	CAYNNNNRTG	2 cut(s)	770, 879
SmlI	CTYRAG	1 cut(s)	975
SmoI	CTYRAG	1 cut(s)	975
SphI	GCATGC	2 cut(s)	43, 1256
Sse9I	AATT	7 cut(s)	239, 341, 445, 598, 841, 1145, 1175
SsiI	CCGC	3 cut(s)	466, 1132, 1248
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	2 cut(s)	372, 639
StyI	CCWWGG	1 cut(s)	961
TaaI	ACNGT	3 cut(s)	462, 488, 1165
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	3 cut(s)	274, 602, 1315
TasI	AATT	7 cut(s)	239, 341, 445, 598, 841, 1145, 1175
TatI	WGTACW	2 cut(s)	149, 163
TfiI	GAWTC	3 cut(s)	136, 308, 1298
Tru1I	TTAA	6 cut(s)	144, 330, 483, 597, 657, 852
Tru9I	TTAA	6 cut(s)	144, 330, 483, 597, 657, 852
TscAI	CASTG	2 cut(s)	220, 1107
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	2 cut(s)	220, 1107
Tth111I	GACNNNGTC	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	907
VspI	ATTAAT	1 cut(s)	144
XapI	RAATTY	3 cut(s)	841, 1145, 1175
XceI	RCATGY	4 cut(s)	43, 769, 878, 1256
XspI	CTAG	2 cut(s)	372, 639
ZraI	GACGTC	1 cut(s)	547
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.