Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005837

Physical Location & Seq

Genomic Coordinates Forward (+)

8950413 .. 8953024

Gene Structure 2612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1104000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGATTTCCGTTCGTAGATATTGCTTTAGAATGGATGTTCTTTCTTATAGTTTGAATTCCATCACTGGCACTTTGAGGCCTATACACTATTTGATTCAAACCCAAATTGACCCAGTTCCCAAAATCGCTTCAAATGGATATCCTGGTATATATGAGCGATTTTTGCTGTGTAATTATTACTCGACCAAGCCCCCATCGCGATCTTTTAGAAGGAGAGAGCGTAAGAGATCGGAGTCCAATAAATCGACTCTTGATGAAGTCCAGTTTCAAAGGGCCTTATCCCAGTTGTTGCCTAGATTTACACCTGAAGAACTTTGCAATGTTATAACTCAGCAAGACAATCCTTTTGTGTGCTTAGAGTTGTTCAATTGGGCATCACAACAGCCACGGTTCAAACACAATGTTTCTACTTATCACATTACGATCAAGAAACTTGGTGTAGCTAAAATGTATCAAGAAATGGATGATGTTGTCAACCAAGTGCTTGCTATTTCTTTCATTGGTTCTGAGGCACTTTACAATTCCATTATTTACTTTTTCACAGAAGCCCGGAAGTTGACTAGAGCTGTCAATATATTTAAACACATGAGGAACAGCAGAAACATGGAGTGTAGGCCTTCAATTAGGACGTATAATATTCTTTTTACGGCCTTTTTGAGTAGGGGATCTAATTCTTACATAAATCACATGTATATGGAGACCACCAGGTGTCTGTTTCGGCAAATGGTGGATGATGGGATTGAGCCTGATATTTACTCTTTGAATTCTATGATTAAGGGTTATGTACTTTCCCTTCATCTCAATGACGCACTTAGAATATTCCATCAGATGGATGTGGTCTATAAATGCACACCAAACTCGTTTTCCTACGATTATATCATCCATGGGTTATGTTGCCAAGGCCGGACACACAATGCTAAGCAGCTGTGCAATGAAATGAAGAGCAAAGGGTTTATGCCGAGTAGTAAATCATACAACTCGCTTGTGAACGCTTTGGTTCTTCATGGAGAGGTTGAGGAGGCACTGAAGTATCTGTGGGAGATGATTGAGAATCGAAGATCAGCTGAATTCATTACTTATAAGACAGTTCTTGATGAAATCTGCAGACAAGGAAGGGTTGGAGAGGCAATGAAGTTGTTGAAGGAATTTGAAGAGAAAGACCTTCTCAATGGGCATGCTTACAGGAAGCTTCTATATGTTCTTGAAGATGACTATGGAGATCCAAATGCTCATGCTCAAATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

416

Amino Acids

48.6

Weight (kDa)

8.95

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	172 - 218	4.8e-06	PPR repeat family
PPR_3	PF13812	238 - 295	1.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	254 - 298	1.9e-07	PPR repeat family
PPR_1	PF12854	283 - 314	2.6e-08	PPR repeat
PPR_2	PF13041	285 - 332	1.4e-11	PPR repeat family
PPR	PF01535	324 - 351	1e-05	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27800
fragaria_vesca	FvH4_3g33090 FvH4_3g33090
malus_domestica	MD03G1104000.v1.1 MD11G1131200.v1.1
prunus_persica	Prupe.6G095500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060431 RchiOBHm_Chr7g0223121 RchiOBHm_Chr7g0223131
rosa_laevigata	RLG00000001999 RLG00000002000 RLG00000035363
rosa_multiflora	Rmu_sc0002192.1_g000036 Rmu_sc0002608.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020390 Rroxscaffold_3G00236080
rosa_rugosa	Rorug05G0329900 Rorug07G0213100
rosa_samantha	Rh5AG394700 Rh5BG406800 Rh5CG430600 Rh5DG421900 Rh7AG358300 Rh7BG346400 Rh7CG376600 Rh7DG353700
rosa_wichuraiana	Rw5G037120 Rw7G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	326, 1080
AccB7I	CCANNNNNTGG	1 cut(s)	829
AccII	CGCG	1 cut(s)	199
AclWI	GGATC	2 cut(s)	673, 1214
AcsI	RAATTY	4 cut(s)	55, 763, 1067, 1145
AcuI	CTGAAG	2 cut(s)	327, 1046
AdeI	CACNNNGTG	1 cut(s)	708
AfaI	GTAC	1 cut(s)	786
AfiI	CCNNNNNNNGG	1 cut(s)	829
AflIII	ACRYGT	1 cut(s)	687
AjnI	CCWGG	2 cut(s)	142, 704
AjuI	GAANNNNNNNTTGG	2 cut(s)	847, 879
AluBI	AGCT	5 cut(s)	443, 566, 925, 1064, 1189
AluI	AGCT	5 cut(s)	443, 566, 925, 1064, 1189
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	2 cut(s)	673, 1214
AoxI	GGCC	5 cut(s)	77, 273, 614, 648, 901
ApeKI	GCWGC	1 cut(s)	922
ApoI	RAATTY	4 cut(s)	55, 763, 1067, 1145
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	550
BaeI	ACNNNNGTAYC	2 cut(s)	1013, 1046
BarI	GAAGNNNNNNTAC	2 cut(s)	777, 809
BbvI	GCAGC	1 cut(s)	934
BccI	CCATC	5 cut(s)	68, 202, 728, 823, 831
BceAI	ACGGC	1 cut(s)	663
BciT130I	CCWGG	2 cut(s)	144, 706
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	2 cut(s)	294, 561
BfmI	CTRYAG	1 cut(s)	1102
BisI	GCNGC	1 cut(s)	923
BlpI	GCTNAGC	1 cut(s)	918
BlsI	GCNGC	1 cut(s)	924
Bme1390I	CCNGG	3 cut(s)	144, 550, 706
BmgT120I	GGNCC	1 cut(s)	273
BmrFI	CCNGG	3 cut(s)	144, 550, 706
BmrI	ACTGGG	2 cut(s)	107, 277
BmsI	GCATC	1 cut(s)	383
BmuI	ACTGGG	2 cut(s)	107, 277
Bpu1102I	GCTNAGC	1 cut(s)	918
BpuMI	CCSGG	1 cut(s)	550
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	3 cut(s)	386, 883, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse1I	ACTGG	4 cut(s)	70, 113, 262, 283
Bse3DI	GCAATG	3 cut(s)	325, 937, 1134
BseBI	CCWGG	2 cut(s)	144, 706
BseDI	CCNNGG	3 cut(s)	386, 883, 898
BseGI	GGATG	5 cut(s)	40, 469, 736, 838, 879
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMI	GCAATG	3 cut(s)	325, 937, 1134
BseMII	CTCAG	2 cut(s)	344, 498
BseNI	ACTGG	4 cut(s)	70, 113, 262, 283
BseRI	GAGGAG	1 cut(s)	1031
BseXI	GCAGC	1 cut(s)	934
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	5 cut(s)	79, 275, 616, 650, 903
BsiSI	CCGG	2 cut(s)	550, 904
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	1 cut(s)	692
BsnI	GGCC	5 cut(s)	79, 275, 616, 650, 903
Bso31I	GGTCTC	1 cut(s)	692
Bsp143I	GATC	6 cut(s)	200, 227, 423, 665, 1058, 1219
Bsp1720I	GCTNAGC	1 cut(s)	918
Bsp19I	CCATGG	1 cut(s)	883
Bsp68I	TCGCGA	1 cut(s)	199
BspANI	GGCC	5 cut(s)	79, 275, 616, 650, 903
BspCNI	CTCAG	2 cut(s)	343, 499
BspFNI	CGCG	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	1106
BspPI	GGATC	2 cut(s)	673, 1214
BspQI	GCTCTTC	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	692
BsrDI	GCAATG	3 cut(s)	325, 937, 1134
BsrI	ACTGG	4 cut(s)	70, 113, 262, 283
BssECI	CCNNGG	3 cut(s)	386, 883, 898
BssMI	GATC	6 cut(s)	200, 227, 423, 665, 1058, 1219
BssT1I	CCWWGG	2 cut(s)	883, 898
Bst2UI	CCWGG	2 cut(s)	144, 706
Bst4CI	ACNGT	2 cut(s)	390, 1087
Bst6I	CTCTTC	2 cut(s)	935, 1146
BstC8I	GCNNGC	2 cut(s)	486, 1176
BstDEI	CTNAG	5 cut(s)	330, 355, 507, 812, 918
BstDSI	CCRYGG	2 cut(s)	386, 883
BstF5I	GGATG	5 cut(s)	40, 469, 736, 838, 879
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	6 cut(s)	203, 230, 426, 668, 1061, 1222
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	6 cut(s)	200, 227, 423, 665, 1058, 1219
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 196
BstNI	CCWGG	2 cut(s)	144, 706
BstNSI	RCATGY	2 cut(s)	691, 1178
BstSCI	CCNGG	3 cut(s)	142, 548, 704
BstSFI	CTRYAG	1 cut(s)	1102
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	934
BstX2I	RGATCY	2 cut(s)	665, 1219
BstYI	RGATCY	2 cut(s)	665, 1219
BsuRI	GGCC	5 cut(s)	79, 275, 616, 650, 903
BtgI	CCRYGG	2 cut(s)	386, 883
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	5 cut(s)	40, 469, 736, 838, 879
BtsIMutI	CAGTG	2 cut(s)	63, 1022
BtuMI	TCGCGA	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	486, 1176
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	1 cut(s)	815
CsiI	ACCWGGT	1 cut(s)	704
Csp6I	GTAC	1 cut(s)	785
CviAII	CATG	7 cut(s)	586, 604, 688, 884, 1004, 1175, 1232
CviQI	GTAC	1 cut(s)	785
DdeI	CTNAG	5 cut(s)	330, 355, 507, 812, 918
DpnI	GATC	6 cut(s)	202, 229, 425, 667, 1060, 1221
DpnII	GATC	6 cut(s)	200, 227, 423, 665, 1058, 1219
DraI	TTTAAA	1 cut(s)	580
DraIII	CACNNNGTG	1 cut(s)	708
Eam1104I	CTCTTC	2 cut(s)	935, 1146
EarI	CTCTTC	2 cut(s)	935, 1146
Eco130I	CCWWGG	2 cut(s)	883, 898
Eco147I	AGGCCT	2 cut(s)	79, 616
Eco31I	GGTCTC	1 cut(s)	692
Eco32I	GATATC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	327, 1046
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRI	GAATTC	3 cut(s)	55, 763, 1067
EcoRII	CCWGG	2 cut(s)	142, 704
EcoRV	GATATC	1 cut(s)	140
EcoT14I	CCWWGG	2 cut(s)	883, 898
ErhI	CCWWGG	2 cut(s)	883, 898
FaeI	CATG	7 cut(s)	589, 607, 691, 887, 1007, 1178, 1235
FatI	CATG	7 cut(s)	585, 603, 687, 883, 1003, 1174, 1231
Fnu4HI	GCNGC	1 cut(s)	923
FokI	GGATG	5 cut(s)	47, 476, 743, 845, 866
Fsp4HI	GCNGC	1 cut(s)	923
FspBI	CTAG	2 cut(s)	294, 561
GluI	GCNGC	1 cut(s)	923
HaeIII	GGCC	5 cut(s)	79, 275, 616, 650, 903
HapII	CCGG	2 cut(s)	550, 904
HgaI	GACGC	1 cut(s)	815
Hin1II	CATG	7 cut(s)	589, 607, 691, 887, 1007, 1178, 1235
HincII	GTYRAC	2 cut(s)	475, 558
HindII	GTYRAC	2 cut(s)	475, 558
HindIII	AAGCTT	1 cut(s)	1187
HinfI	GANTC	4 cut(s)	94, 233, 247, 1051
HpaII	CCGG	2 cut(s)	550, 904
Hpy166II	GTNNAC	3 cut(s)	475, 558, 988
Hpy188I	TCNGA	4 cut(s)	232, 508, 828, 1244
Hpy188III	TCNNGA	6 cut(s)	198, 251, 427, 455, 1091, 1202
Hpy8I	GTNNAC	3 cut(s)	475, 558, 988
HpyAV	CCTTC	6 cut(s)	204, 627, 803, 1107, 1135, 1172
HpyCH4III	ACNGT	2 cut(s)	390, 1087
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	4 cut(s)	318, 849, 930, 1104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 196
HpyF3I	CTNAG	5 cut(s)	330, 355, 507, 812, 918
HpySE526I	ACGT	1 cut(s)	629
Hsp92II	CATG	7 cut(s)	589, 607, 691, 887, 1007, 1178, 1235
Kzo9I	GATC	6 cut(s)	200, 227, 423, 665, 1058, 1219
LguI	GCTCTTC	1 cut(s)	935
Lsp1109I	GCAGC	1 cut(s)	934
LweI	GCATC	1 cut(s)	383
MabI	ACCWGGT	1 cut(s)	704
MaeI	CTAG	2 cut(s)	294, 561
MaeII	ACGT	1 cut(s)	629
MalI	GATC	6 cut(s)	202, 229, 425, 667, 1060, 1221
MboI	GATC	6 cut(s)	200, 227, 423, 665, 1058, 1219
MboII	GAAGA	6 cut(s)	320, 952, 992, 1068, 1163, 1217
MfeI	CAATTG	1 cut(s)	367
MflI	RGATCY	2 cut(s)	665, 1219
MlyI	GAGTC	2 cut(s)	241, 242
MmeI	TCCRAC	1 cut(s)	1099
MnlI	CCTC	7 cut(s)	69, 502, 582, 1003, 1009, 1012, 1117
MseI	TTAA	2 cut(s)	579, 774
MslI	CAYNNNNRTG	2 cut(s)	692, 801
MspA1I	CMGCKG	2 cut(s)	925, 1064
MspI	CCGG	2 cut(s)	550, 904
MspR9I	CCNGG	3 cut(s)	144, 550, 706
MunI	CAATTG	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	144, 706
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	163, 196
NciI	CCSGG	1 cut(s)	550
NcoI	CCATGG	1 cut(s)	883
NdeII	GATC	6 cut(s)	200, 227, 423, 665, 1058, 1219
NlaIII	CATG	7 cut(s)	589, 607, 691, 887, 1007, 1178, 1235
NmeAIII	GCCGAG	1 cut(s)	984
NruI	TCGCGA	1 cut(s)	199
NspI	RCATGY	2 cut(s)	691, 1178
PaeI	GCATGC	1 cut(s)	1178
PceI	AGGCCT	2 cut(s)	79, 616
PciI	ACATGT	1 cut(s)	687
PciSI	GCTCTTC	1 cut(s)	935
PfeI	GAWTC	2 cut(s)	94, 1051
PflMI	CCANNNNNTGG	1 cut(s)	829
PkrI	GCNGC	1 cut(s)	924
PleI	GAGTC	2 cut(s)	241, 241
PpsI	GAGTC	2 cut(s)	241, 241
PscI	ACATGT	1 cut(s)	687
PsiI	TTATAA	2 cut(s)	326, 1080
Psp6I	CCWGG	2 cut(s)	142, 704
PspGI	CCWGG	2 cut(s)	142, 704
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	1106
PsuI	RGATCY	2 cut(s)	665, 1219
PvuII	CAGCTG	2 cut(s)	925, 1064
RruI	TCGCGA	1 cut(s)	199
RsaI	GTAC	1 cut(s)	786
RsaNI	GTAC	1 cut(s)	785
RseI	CAYNNNNRTG	2 cut(s)	692, 801
SapI	GCTCTTC	1 cut(s)	935
SaqAI	TTAA	2 cut(s)	579, 774
SatI	GCNGC	1 cut(s)	923
Sau3AI	GATC	6 cut(s)	200, 227, 423, 665, 1058, 1219
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	2 cut(s)	241, 242
ScrFI	CCNGG	3 cut(s)	144, 550, 706
SexAI	ACCWGGT	1 cut(s)	704
SfaNI	GCATC	1 cut(s)	383
SfcI	CTRYAG	1 cut(s)	1102
SmiMI	CAYNNNNRTG	2 cut(s)	692, 801
SphI	GCATGC	1 cut(s)	1178
SseBI	AGGCCT	2 cut(s)	79, 616
SspI	AATATT	2 cut(s)	637, 819
SspMI	CTAG	2 cut(s)	294, 561
StuI	AGGCCT	2 cut(s)	79, 616
StyD4I	CCNGG	3 cut(s)	142, 548, 704
StyI	CCWWGG	2 cut(s)	883, 898
TaaI	ACNGT	2 cut(s)	390, 1087
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	3 cut(s)	182, 245, 1054
TatI	WGTACW	1 cut(s)	784
TfiI	GAWTC	2 cut(s)	94, 1051
Tru1I	TTAA	2 cut(s)	579, 774
Tru9I	TTAA	2 cut(s)	579, 774
TscAI	CASTG	2 cut(s)	70, 1029
TseI	GCWGC	1 cut(s)	922
TspDTI	ATGAA	9 cut(s)	270, 487, 785, 948, 953, 992, 1060, 1110, 1145
TspRI	CASTG	2 cut(s)	70, 1029
Van91I	CCANNNNNTGG	1 cut(s)	829
XapI	RAATTY	4 cut(s)	55, 763, 1067, 1145
XceI	RCATGY	2 cut(s)	691, 1178
XspI	CTAG	2 cut(s)	294, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.