Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005837

Physical Location & Seq

Genomic Coordinates Reverse (-)

6626193 .. 6627387

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G095500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

TCGAATCCAATTAATAGCACTTTGAGGCCTATACATTATTTGAGTCAAACCCAAATTGACCCAGTTCCCAAAATTGCTTCAAATGGATTTCTGGGTATATATGACCGGTTTTTGTTGTATAACTTTTACTCAACCAAGCCCCCTTCGCGATCTTTTAGAAGGAGAGAAAATAAAAGAGTCAAATCCAGTAAATCAACTCTTGATGAAGTCCAATTTCAAAGGGCCATATCCCAGTTGTTGCCTAGATTCACACCTGAAGAACTTTGCAATGTTATAACTCAGCAAGACGATCCTATTGTGTGTTTAGAGTTGTTCAATTGGGCATCACAACAGCCACGCTTCAAACATGATGCACTTTACAATTCCATTATCTATTTTTTCACAGAAGCTCGGAAGTTGACTAGAGCTGTCAATATATTTAAACACATGCAGAATAGCAGAAACTTGAATTGCAGGCCTTCAATTAGGACGTATAATATTCTTTTTACGGCCTTTTTGAGTAGGGGATCTAATTCTTACATAAATCACATGTACATGGAGACCATTAGGTGCCTGTTTAGGCAAATGGTGGATGATGGGATTGAACCTGATATTTACTCTTTGAATTCTATGATTAAGGGGTATGTACTTTCCCTTCATGTCAATGATGCACTTAGAATATTCCATCAGATGGGTGTGGTCTATAATTGCTTGCCCAACTCATTTTCGTATGATTATCTCATCCATGGGTTATGTTCCCAAGGCCGAACAAACAATGCTAAGCAGCTGTGCAATGAAATGAAGAGTAAAGGGTTTATCCCAAGTAGTAAATCATACAACTCGCTTGTGAACGCTTTGGCTCTTAATGGAGAGGTTGAGGAGGCAGTGAAGTATTTGTGGGAGATGATTGAGAAGCAAAGATCAGCTGAATTCATTACTTATAGGACAGTGCTTGATGAAATCTGCAGACAAGGAAGGGTGGGAGAGGCAATGAGGTTGTTGAAGGAGTTCCAAGAGAAAGACCTTCTGAATGGGCATACTTACAGGAAGCTTCTATATGTGCTTGAAGATGACTATGGAGATTCGAATGCCCACTCTCAATTCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

363

Amino Acids

42.29

Weight (kDa)

9.04

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27800
fragaria_vesca	FvH4_3g33090 FvH4_3g33090
malus_domestica	MD03G1104000.v1.1 MD11G1131200.v1.1
prunus_persica	Prupe.6G095500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060431 RchiOBHm_Chr7g0223121 RchiOBHm_Chr7g0223131
rosa_laevigata	RLG00000001999 RLG00000002000 RLG00000035363
rosa_multiflora	Rmu_sc0002192.1_g000036 Rmu_sc0002608.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020390 Rroxscaffold_3G00236080
rosa_rugosa	Rorug05G0329900 Rorug07G0213100
rosa_samantha	Rh5AG394700 Rh5BG406800 Rh5CG430600 Rh5DG421900 Rh7AG358300 Rh7BG346400 Rh7CG376600 Rh7DG353700
rosa_wichuraiana	Rw5G037120 Rw7G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	549
AccB7I	CCANNNNNTGG	1 cut(s)	670
AccII	CGCG	1 cut(s)	148
AclWI	GGATC	2 cut(s)	284, 514
AcsI	RAATTY	2 cut(s)	604, 908
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	2 cut(s)	533, 627
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	528
AgeI	ACCGGT	1 cut(s)	105
AluBI	AGCT	5 cut(s)	389, 407, 766, 905, 1030
AluI	AGCT	5 cut(s)	389, 407, 766, 905, 1030
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	284, 514
AoxI	GGCC	5 cut(s)	26, 222, 455, 489, 742
ApeKI	GCWGC	1 cut(s)	763
ApoI	RAATTY	2 cut(s)	604, 908
AseI	ATTAAT	1 cut(s)	12
AsiGI	ACCGGT	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	986
AspS9I	GGNCC	1 cut(s)	222
AsuII	TTCGAA	1 cut(s)	1064
BanI	GGYRCC	1 cut(s)	549
BarI	GAAGNNNNNNTAC	2 cut(s)	618, 650
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	3 cut(s)	569, 664, 672
BceAI	ACGGC	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	2 cut(s)	243, 402
BfmI	CTRYAG	1 cut(s)	943
BisI	GCNGC	1 cut(s)	764
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	765
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	551
BmrI	ACTGGG	2 cut(s)	56, 226
BmsI	GCATC	3 cut(s)	332, 340, 637
BmuI	ACTGGG	2 cut(s)	56, 226
Bpu1102I	GCTNAGC	1 cut(s)	759
Bpu14I	TTCGAA	1 cut(s)	1064
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	724, 739
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	3 cut(s)	62, 186, 232
Bse3DI	GCAATG	3 cut(s)	274, 778, 975
BseDI	CCNNGG	2 cut(s)	724, 739
BseGI	GGATG	2 cut(s)	577, 720
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	3 cut(s)	274, 778, 975
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	3 cut(s)	62, 186, 232
BseRI	GAGGAG	1 cut(s)	872
BseXI	GCAGC	1 cut(s)	775
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	5 cut(s)	28, 224, 457, 491, 744
BshNI	GGYRCC	1 cut(s)	549
BshTI	ACCGGT	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	1072
BsnI	GGCC	5 cut(s)	28, 224, 457, 491, 744
Bso31I	GGTCTC	1 cut(s)	533
Bsp119I	TTCGAA	1 cut(s)	1064
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	149, 289, 506, 899
Bsp1720I	GCTNAGC	1 cut(s)	759
Bsp19I	CCATGG	1 cut(s)	724
Bsp68I	TCGCGA	1 cut(s)	148
BspANI	GGCC	5 cut(s)	28, 224, 457, 491, 744
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	551
BspMAI	CTGCAG	1 cut(s)	947
BspPI	GGATC	2 cut(s)	284, 514
BspT104I	TTCGAA	1 cut(s)	1064
BspT107I	GGYRCC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	533
BsrDI	GCAATG	3 cut(s)	274, 778, 975
BsrFI	RCCGGY	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	62, 186, 232
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	724, 739
BssMI	GATC	4 cut(s)	149, 289, 506, 899
BssT1I	CCWWGG	2 cut(s)	724, 739
Bst4CI	ACNGT	1 cut(s)	928
Bst6I	CTCTTC	1 cut(s)	776
BstAUI	TGTACA	1 cut(s)	531
BstBI	TTCGAA	1 cut(s)	1064
BstC8I	GCNNGC	2 cut(s)	455, 692
BstDEI	CTNAG	3 cut(s)	279, 653, 759
BstDSI	CCRYGG	1 cut(s)	724
BstF5I	GGATG	2 cut(s)	577, 720
BstFNI	CGCG	1 cut(s)	148
BstKTI	GATC	4 cut(s)	152, 292, 509, 902
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	4 cut(s)	149, 289, 506, 899
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNSI	RCATGY	2 cut(s)	430, 532
BstSFI	CTRYAG	1 cut(s)	943
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	775
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	5 cut(s)	28, 224, 457, 491, 744
BtgI	CCRYGG	1 cut(s)	724
BtsCI	GGATG	2 cut(s)	577, 720
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	2 cut(s)	870, 933
BtuMI	TCGCGA	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	455, 692
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	532, 626
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	6 cut(s)	347, 427, 529, 535, 638, 725
CviQI	GTAC	2 cut(s)	532, 626
DdeI	CTNAG	3 cut(s)	279, 653, 759
DpnI	GATC	4 cut(s)	151, 291, 508, 901
DpnII	GATC	4 cut(s)	149, 289, 506, 899
DraI	TTTAAA	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	776
EarI	CTCTTC	1 cut(s)	776
Eco130I	CCWWGG	2 cut(s)	724, 739
Eco147I	AGGCCT	2 cut(s)	28, 457
Eco31I	GGTCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	276
EcoRI	GAATTC	2 cut(s)	604, 908
EcoT14I	CCWWGG	2 cut(s)	724, 739
ErhI	CCWWGG	2 cut(s)	724, 739
FaeI	CATG	6 cut(s)	350, 430, 532, 538, 641, 728
FatI	CATG	6 cut(s)	346, 426, 528, 534, 637, 724
Fnu4HI	GCNGC	1 cut(s)	764
FokI	GGATG	2 cut(s)	584, 707
Fsp4HI	GCNGC	1 cut(s)	764
FspBI	CTAG	2 cut(s)	243, 402
GluI	GCNGC	1 cut(s)	764
HaeIII	GGCC	5 cut(s)	28, 224, 457, 491, 744
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	6 cut(s)	350, 430, 532, 538, 641, 728
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	1028
HinfI	GANTC	5 cut(s)	4, 43, 177, 246, 1061
HpaII	CCGG	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	399, 829
Hpy188I	TCNGA	3 cut(s)	393, 669, 1008
Hpy188III	TCNNGA	2 cut(s)	147, 200
Hpy8I	GTNNAC	2 cut(s)	399, 829
HpyAV	CCTTC	7 cut(s)	153, 153, 468, 644, 948, 976, 1013
HpyCH4III	ACNGT	1 cut(s)	928
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	7 cut(s)	267, 353, 430, 453, 650, 771, 945
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	3 cut(s)	279, 653, 759
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	6 cut(s)	350, 430, 532, 538, 641, 728
Kzo9I	GATC	4 cut(s)	149, 289, 506, 899
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	3 cut(s)	332, 340, 637
MaeI	CTAG	2 cut(s)	243, 402
MaeII	ACGT	1 cut(s)	470
MalI	GATC	4 cut(s)	151, 291, 508, 901
MboI	GATC	4 cut(s)	149, 289, 506, 899
MboII	GAAGA	3 cut(s)	269, 793, 1058
MfeI	CAATTG	1 cut(s)	316
MflI	RGATCY	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	52, 186
MnlI	CCTC	6 cut(s)	18, 844, 850, 853, 958, 966
MroXI	GAANNNNTTC	1 cut(s)	986
MseI	TTAA	4 cut(s)	12, 420, 615, 843
MslI	CAYNNNNRTG	2 cut(s)	533, 642
MspA1I	CMGCKG	2 cut(s)	766, 905
MspI	CCGG	1 cut(s)	106
MunI	CAATTG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	1072
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	724
NdeII	GATC	4 cut(s)	149, 289, 506, 899
NlaIII	CATG	6 cut(s)	350, 430, 532, 538, 641, 728
NlaIV	GGNNCC	1 cut(s)	551
NruI	TCGCGA	1 cut(s)	148
NspI	RCATGY	2 cut(s)	430, 532
NspV	TTCGAA	1 cut(s)	1064
PceI	AGGCCT	2 cut(s)	28, 457
PciI	ACATGT	1 cut(s)	528
PctI	GAATGC	1 cut(s)	1072
PdmI	GAANNNNTTC	1 cut(s)	986
PfeI	GAWTC	3 cut(s)	4, 246, 1061
PflMI	CCANNNNNTGG	1 cut(s)	670
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	765
PleI	GAGTC	2 cut(s)	51, 185
PpsI	GAGTC	2 cut(s)	51, 185
PscI	ACATGT	1 cut(s)	528
PshBI	ATTAAT	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	551
PspPI	GGNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	947
PsuI	RGATCY	1 cut(s)	506
PvuII	CAGCTG	2 cut(s)	766, 905
RruI	TCGCGA	1 cut(s)	148
RsaI	GTAC	2 cut(s)	533, 627
RsaNI	GTAC	2 cut(s)	532, 626
RseI	CAYNNNNRTG	2 cut(s)	533, 642
SaqAI	TTAA	4 cut(s)	12, 420, 615, 843
SatI	GCNGC	1 cut(s)	764
Sau3AI	GATC	4 cut(s)	149, 289, 506, 899
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	2 cut(s)	52, 186
SfaNI	GCATC	3 cut(s)	332, 340, 637
SfcI	CTRYAG	1 cut(s)	943
SfuI	TTCGAA	1 cut(s)	1064
SmiMI	CAYNNNNRTG	2 cut(s)	533, 642
SseBI	AGGCCT	2 cut(s)	28, 457
SspI	AATATT	2 cut(s)	478, 660
SspMI	CTAG	2 cut(s)	243, 402
StuI	AGGCCT	2 cut(s)	28, 457
StyI	CCWWGG	2 cut(s)	724, 739
TaaI	ACNGT	1 cut(s)	928
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	2 cut(s)	2, 1064
TatI	WGTACW	2 cut(s)	531, 625
TfiI	GAWTC	3 cut(s)	4, 246, 1061
Tru1I	TTAA	4 cut(s)	12, 420, 615, 843
Tru9I	TTAA	4 cut(s)	12, 420, 615, 843
TscAI	CASTG	2 cut(s)	870, 933
TseI	GCWGC	1 cut(s)	763
TspDTI	ATGAA	6 cut(s)	219, 626, 789, 794, 901, 951
TspRI	CASTG	2 cut(s)	870, 933
Van91I	CCANNNNNTGG	1 cut(s)	670
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	2 cut(s)	604, 908
XceI	RCATGY	2 cut(s)	430, 532
XmnI	GAANNNNTTC	1 cut(s)	986
XspI	CTAG	2 cut(s)	243, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.