Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005837

Physical Location & Seq

Genomic Coordinates Forward (+)

65931824 .. 65935232

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035363

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGTAAAATCACGCTGTTTTACAATCTCACGTGCCTTGGTTTTCACCTTTGCAGCCTTCTTCTCTGTCTCGCTGTTCCTCACACTCTGTACTCTAGTCTCTAGCCACTACAAGAAAAGTACTCTTTTACGGCTTTACGGGTTGATTCGCTCCACAGTTACATATCTTCCTCCTGAATCAATTGATCCGATCCTCTCATCCTTCATACAATCATACCTTCTCCTGATAATCCTTTCAGTTTTCTTGCTGAAAAGCCATATGTTGTTGCCTAGATTTACACCTGAAGAACTGTGTGATGTTATAACTAAGCAAGATGATCCTCTTGTGTGTTTAGAGTTATTCAATTGGGCATCTCAACAGTCGCGGTTCAAACATGATGTTAACAGCTATCACATTACAATAAAGAAACTTGGTGTAGCTAAGATGTACAAAGAGATGGATGACATTGTCAACCAAGTGCTTGCTATCTCTCACATGGGTTCTGAGGCGCTTTTCAATTCCATTATATACTTTTTCACAGAAGCTCGGAAGTTGACTAGAGCTGTCAATATATTTAAACACATGAAGAATAGTAGAAACGTGGACTGTAGGCCTTCAGTTAGGACATACAATATTCTGTTTACTGCCTTTTTGAGTAGGGGATGTAATACCTACATAAATCACATGTATATGGAAACCATAAGATGCCTGTTTAGGCAAATGGTGAATGATGGGATTGAACCCGATATTTATACTTTGAATTCAATGATTAAGGGGTATGTTCTTTCCCTTCATGTGAATGATGCACTTAGAGTATTCCATCAGATGGGTGTGGTCTATAACTGCCTGCCAAACACATTTTCCTATGATTATCTCATCCATGGATTATGTGCTCAAGGCCGAACAAACAATGCTAAGCAGTTGTGCAATGAAATGAAGACTAAAGGGTTTATCCCGAGTAGTAAATCCTACAACTCGCTTGTGAATGCTTTGGCTCTTAGTGGAGAGATTGAGGAGGCAGTGAAGTATTTGTGGGAGATGATTGAGAAACGAAGGTCAACTGAATTCATTACTTATAAGACAGTGCTTGATGAAATGTGCAGACAAGGACAGGTTGGACAGGCAATGAAGTTGCTAAAAGAATTTCAAGAGAAAGATGTTCTGAGTGGGCATGCTTACAGGAAGCTCCGATATGTGCTTGAAGATGACTATGGAGATTCTGTTTCCCATACTCGATTGAGCACAGCTCTTGCTGCCAAGCATGTATTCAGCTGCCCCTCTTCCACTGGCACATGCTCATGTGGCATCCTCGTCCAAGACAAATCCAGGTGTTTTAGGAGCACCACCAAACCTCTGTTTGACTCCATGGACTGGAGAAGGCAAAAAATGATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

459

Amino Acids

52.73

Weight (kDa)

9.1

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	164 - 210	3.2e-06	PPR repeat family
PPR_2	PF13041	218 - 253	4.8e-06	PPR repeat family
PPR_3	PF13812	230 - 286	4.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	247 - 290	1.4e-07	PPR repeat family
PPR_1	PF12854	274 - 306	1.7e-08	PPR repeat
PPR_2	PF13041	277 - 325	1.8e-12	PPR repeat family
TPR_24	PF23276	279 - 375	1.1e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27800
fragaria_vesca	FvH4_3g33090 FvH4_3g33090
malus_domestica	MD03G1104000.v1.1 MD11G1131200.v1.1
prunus_persica	Prupe.6G095500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060431 RchiOBHm_Chr7g0223121 RchiOBHm_Chr7g0223131
rosa_laevigata	RLG00000001999 RLG00000002000 RLG00000035363
rosa_multiflora	Rmu_sc0002192.1_g000036 Rmu_sc0002608.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020390 Rroxscaffold_3G00236080
rosa_rugosa	Rorug05G0329900 Rorug07G0213100
rosa_samantha	Rh5AG394700 Rh5BG406800 Rh5CG430600 Rh5DG421900 Rh7AG358300 Rh7BG346400 Rh7CG376600 Rh7DG353700
rosa_wichuraiana	Rw5G037120 Rw7G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	302, 1056
AccB7I	CCANNNNNTGG	2 cut(s)	805, 1350
AccII	CGCG	1 cut(s)	364
AciI	CCGC	1 cut(s)	364
AclWI	GGATC	3 cut(s)	179, 184, 311
AcsI	RAATTY	3 cut(s)	739, 1043, 1121
AcuI	CTGAAG	2 cut(s)	303, 579
AcvI	CACGTG	1 cut(s)	32
AfaI	GTAC	3 cut(s)	91, 121, 428
AfiI	CCNNNNNNNGG	2 cut(s)	805, 1350
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	8 cut(s)	343, 370, 496, 719, 739, 744, 1127, 1181
AjnI	CCWGG	1 cut(s)	1304
AjuI	GAANNNNNNNTTGG	4 cut(s)	823, 855, 1229, 1261
AluBI	AGCT	7 cut(s)	387, 419, 524, 542, 1165, 1226, 1251
AluI	AGCT	7 cut(s)	387, 419, 524, 542, 1165, 1226, 1251
Alw21I	GWGCWC	3 cut(s)	874, 1223, 1322
Alw26I	GTCTC	2 cut(s)	73, 103
AlwI	GGATC	3 cut(s)	179, 184, 311
Ama87I	CYCGRG	1 cut(s)	934
AoxI	GGCC	2 cut(s)	590, 877
ApeKI	GCWGC	3 cut(s)	53, 1232, 1251
ApoI	RAATTY	3 cut(s)	739, 1043, 1121
AspLEI	GCGC	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	37, 715
AvaI	CYCGRG	1 cut(s)	934
BbrPI	CACGTG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	923
Bbv12I	GWGCWC	3 cut(s)	874, 1223, 1322
BbvI	GCAGC	3 cut(s)	65, 1219, 1238
BccI	CCATC	4 cut(s)	430, 704, 799, 807
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	1306
BcoDI	GTCTC	2 cut(s)	73, 103
BfaI	CTAG	4 cut(s)	95, 102, 270, 537
BfmI	CTRYAG	1 cut(s)	586
BfoI	RGCGCY	1 cut(s)	491
BisI	GCNGC	3 cut(s)	54, 1233, 1252
BlpI	GCTNAGC	1 cut(s)	894
BlsI	GCNGC	3 cut(s)	55, 1234, 1253
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	1306
BmeT110I	CYCGRG	1 cut(s)	934
BmrFI	CCNGG	1 cut(s)	1306
BmsI	GCATC	5 cut(s)	359, 674, 772, 1293, 1359
BpiI	GAAGAC	1 cut(s)	923
BplI	GAGNNNNNCTC	2 cut(s)	1210, 1242
BpmI	CTGGAG	1 cut(s)	1372
Bpu1102I	GCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	858
BsaAI	YACGTR	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	36, 859, 1344
BsaXI	ACNNNNNCTCC	2 cut(s)	1185, 1215
Bsc4I	CCNNNNNNNGG	2 cut(s)	805, 1350
Bse1I	ACTGG	2 cut(s)	1270, 1355
Bse3DI	GCAATG	2 cut(s)	913, 1110
BseBI	CCWGG	1 cut(s)	1306
BseDI	CCNNGG	3 cut(s)	36, 859, 1344
BseGI	GGATG	5 cut(s)	197, 445, 647, 855, 1284
BseLI	CCNNNNNNNGG	2 cut(s)	805, 1350
BseMI	GCAATG	2 cut(s)	913, 1110
BseMII	CTCAG	2 cut(s)	474, 1133
BseNI	ACTGG	2 cut(s)	1270, 1355
BseRI	GAGGAG	1 cut(s)	1007
BseXI	GCAGC	3 cut(s)	65, 1219, 1238
BsgI	GTGCAG	1 cut(s)	1099
Bsh1236I	CGCG	1 cut(s)	364
BshFI	GGCC	2 cut(s)	592, 879
BsiHKAI	GWGCWC	3 cut(s)	874, 1223, 1322
BsiHKCI	CYCGRG	1 cut(s)	934
BslI	CCNNNNNNNGG	2 cut(s)	805, 1350
BsmAI	GTCTC	2 cut(s)	73, 103
BsmI	GAATGC	1 cut(s)	970
BsnI	GGCC	2 cut(s)	592, 879
BsoBI	CYCGRG	1 cut(s)	934
Bsp1286I	GDGCHC	3 cut(s)	874, 1223, 1322
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	3 cut(s)	184, 189, 316
Bsp1720I	GCTNAGC	1 cut(s)	894
Bsp19I	CCATGG	2 cut(s)	859, 1344
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	2 cut(s)	592, 879
BspCNI	CTCAG	2 cut(s)	475, 1134
BspFNI	CGCG	1 cut(s)	364
BspPI	GGATC	3 cut(s)	179, 184, 311
BsrDI	GCAATG	2 cut(s)	913, 1110
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	1270, 1355
BssECI	CCNNGG	3 cut(s)	36, 859, 1344
BssMI	GATC	3 cut(s)	184, 189, 316
BssT1I	CCWWGG	3 cut(s)	36, 859, 1344
Bst2UI	CCWGG	1 cut(s)	1306
Bst4CI	ACNGT	5 cut(s)	157, 291, 360, 587, 1063
Bst6I	CTCTTC	1 cut(s)	1264
BstAUI	TGTACA	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	462, 827, 1152
BstDEI	CTNAG	7 cut(s)	306, 420, 483, 788, 894, 977, 1142
BstDSI	CCRYGG	2 cut(s)	859, 1344
BstF5I	GGATG	5 cut(s)	197, 445, 647, 855, 1284
BstFNI	CGCG	1 cut(s)	364
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	3 cut(s)	187, 192, 319
BstMAI	GTCTC	2 cut(s)	73, 103
BstMBI	GATC	3 cut(s)	184, 189, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	1232, 1281
BstNI	CCWGG	1 cut(s)	1306
BstNSI	RCATGY	4 cut(s)	667, 1154, 1244, 1275
BstSCI	CCNGG	1 cut(s)	1304
BstSFI	CTRYAG	1 cut(s)	586
BstUI	CGCG	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	65, 1219, 1238
BstV2I	GAAGAC	1 cut(s)	923
BsuRI	GGCC	2 cut(s)	592, 879
BtgI	CCRYGG	2 cut(s)	859, 1344
BtsCI	GGATG	5 cut(s)	197, 445, 647, 855, 1284
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	3 cut(s)	1005, 1068, 1263
Cac8I	GCNNGC	3 cut(s)	462, 827, 1152
CfoI	GCGC	1 cut(s)	490
Csp6I	GTAC	3 cut(s)	90, 120, 427
CviQI	GTAC	3 cut(s)	90, 120, 427
DdeI	CTNAG	7 cut(s)	306, 420, 483, 788, 894, 977, 1142
DpnI	GATC	3 cut(s)	186, 191, 318
DpnII	GATC	3 cut(s)	184, 189, 316
DraI	TTTAAA	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	1264
EarI	CTCTTC	1 cut(s)	1264
Eco130I	CCWWGG	3 cut(s)	36, 859, 1344
Eco147I	AGGCCT	1 cut(s)	592
Eco57I	CTGAAG	2 cut(s)	303, 579
Eco72I	CACGTG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	934
EcoRI	GAATTC	2 cut(s)	739, 1043
EcoRII	CCWGG	1 cut(s)	1304
EcoT14I	CCWWGG	3 cut(s)	36, 859, 1344
ErhI	CCWWGG	3 cut(s)	36, 859, 1344
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	54, 1233, 1252
FokI	GGATG	5 cut(s)	184, 452, 654, 842, 1271
Fsp4HI	GCNGC	3 cut(s)	54, 1233, 1252
FspBI	CTAG	4 cut(s)	95, 102, 270, 537
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	54, 1233, 1252
GsuI	CTGGAG	1 cut(s)	1372
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	592, 879
HhaI	GCGC	1 cut(s)	490
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	4 cut(s)	382, 451, 534, 1038
HindII	GTYRAC	4 cut(s)	382, 451, 534, 1038
HinfI	GANTC	4 cut(s)	145, 176, 1196, 1340
HpaI	GTTAAC	1 cut(s)	382
HphI	GGTGA	2 cut(s)	37, 715
Hpy166II	GTNNAC	6 cut(s)	382, 451, 534, 583, 621, 1038
Hpy188I	TCNGA	6 cut(s)	189, 484, 528, 804, 1143, 1169
Hpy188III	TCNNGA	4 cut(s)	173, 223, 934, 1127
Hpy8I	GTNNAC	6 cut(s)	382, 451, 534, 583, 621, 1038
HpyAV	CCTTC	7 cut(s)	67, 211, 227, 603, 779, 1026, 1350
HpyCH4III	ACNGT	5 cut(s)	157, 291, 360, 587, 1063
HpyCH4IV	ACGT	2 cut(s)	31, 579
HpyCH4V	TGCA	5 cut(s)	53, 785, 906, 1080, 1372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1232, 1281
HpyF3I	CTNAG	7 cut(s)	306, 420, 483, 788, 894, 977, 1142
HpySE526I	ACGT	2 cut(s)	31, 579
HspAI	GCGC	1 cut(s)	488
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	184, 189, 316
LmnI	GCTCC	3 cut(s)	155, 1170, 1317
Lsp1109I	GCAGC	3 cut(s)	65, 1219, 1238
LweI	GCATC	5 cut(s)	359, 674, 772, 1293, 1359
MaeI	CTAG	4 cut(s)	95, 102, 270, 537
MaeII	ACGT	2 cut(s)	31, 579
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	3 cut(s)	186, 191, 318
MboI	GATC	3 cut(s)	184, 189, 316
MboII	GAAGA	7 cut(s)	52, 158, 296, 577, 928, 1193, 1251
MfeI	CAATTG	2 cut(s)	180, 343
MhlI	GDGCHC	3 cut(s)	874, 1223, 1322
MluCI	AATT	6 cut(s)	180, 343, 496, 739, 1043, 1121
MlyI	GAGTC	1 cut(s)	1334
MmeI	TCCRAC	1 cut(s)	1075
MseI	TTAA	3 cut(s)	381, 555, 750
MslI	CAYNNNNRTG	3 cut(s)	668, 777, 1276
MspA1I	CMGCKG	1 cut(s)	1251
MspR9I	CCNGG	1 cut(s)	1306
MunI	CAATTG	2 cut(s)	180, 343
Mva1269I	GAATGC	1 cut(s)	970
MvaI	CCWGG	1 cut(s)	1306
MvnI	CGCG	1 cut(s)	364
MwoI	GCNNNNNNNGC	2 cut(s)	1232, 1281
NcoI	CCATGG	2 cut(s)	859, 1344
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	3 cut(s)	184, 189, 316
NspI	RCATGY	4 cut(s)	667, 1154, 1244, 1275
PaeI	GCATGC	1 cut(s)	1154
PceI	AGGCCT	1 cut(s)	592
PciI	ACATGT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	970
PfeI	GAWTC	3 cut(s)	145, 176, 1196
PflFI	GACNNNGTC	1 cut(s)	446
PflMI	CCANNNNNTGG	2 cut(s)	805, 1350
PkrI	GCNGC	3 cut(s)	55, 1234, 1253
PleI	GAGTC	1 cut(s)	1334
PmaCI	CACGTG	1 cut(s)	32
PmlI	CACGTG	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	1334
Ppu21I	YACGTR	1 cut(s)	32
PscI	ACATGT	1 cut(s)	663
PsiI	TTATAA	2 cut(s)	302, 1056
Psp6I	CCWGG	1 cut(s)	1304
PspCI	CACGTG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	1304
PsyI	GACNNNGTC	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	1251
RsaI	GTAC	3 cut(s)	91, 121, 428
RsaNI	GTAC	3 cut(s)	90, 120, 427
RseI	CAYNNNNRTG	3 cut(s)	668, 777, 1276
SaqAI	TTAA	3 cut(s)	381, 555, 750
SatI	GCNGC	3 cut(s)	54, 1233, 1252
Sau3AI	GATC	3 cut(s)	184, 189, 316
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	1 cut(s)	1334
ScrFI	CCNGG	1 cut(s)	1306
SduI	GDGCHC	3 cut(s)	874, 1223, 1322
SfaNI	GCATC	5 cut(s)	359, 674, 772, 1293, 1359
SfcI	CTRYAG	1 cut(s)	586
SmiMI	CAYNNNNRTG	3 cut(s)	668, 777, 1276
SmlI	CTYRAG	1 cut(s)	873
SmoI	CTYRAG	1 cut(s)	873
SphI	GCATGC	1 cut(s)	1154
Sse9I	AATT	6 cut(s)	180, 343, 496, 739, 1043, 1121
SseBI	AGGCCT	1 cut(s)	592
SsiI	CCGC	1 cut(s)	364
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	4 cut(s)	95, 102, 270, 537
StuI	AGGCCT	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	1304
StyI	CCWWGG	3 cut(s)	36, 859, 1344
TaaI	ACNGT	5 cut(s)	157, 291, 360, 587, 1063
TaiI	ACGT	2 cut(s)	34, 582
TaqI	TCGA	1 cut(s)	1213
TasI	AATT	6 cut(s)	180, 343, 496, 739, 1043, 1121
TatI	WGTACW	3 cut(s)	89, 119, 426
TfiI	GAWTC	3 cut(s)	145, 176, 1196
Tru1I	TTAA	3 cut(s)	381, 555, 750
Tru9I	TTAA	3 cut(s)	381, 555, 750
TscAI	CASTG	3 cut(s)	1005, 1068, 1270
TseI	GCWGC	3 cut(s)	53, 1232, 1251
TspDTI	ATGAA	8 cut(s)	193, 578, 761, 924, 929, 1036, 1086, 1121
TspRI	CASTG	3 cut(s)	1005, 1068, 1270
Tth111I	GACNNNGTC	1 cut(s)	446
Van91I	CCANNNNNTGG	2 cut(s)	805, 1350
XapI	RAATTY	3 cut(s)	739, 1043, 1121
XceI	RCATGY	4 cut(s)	667, 1154, 1244, 1275
XspI	CTAG	4 cut(s)	95, 102, 270, 537
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.