Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005837

Physical Location & Seq

Genomic Coordinates Reverse (-)

11863887 .. 11866915

Gene Structure 3029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1131200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCTTTCCGTTCGTAGATATTGCTTTAGAAAGGATGTTCTTTCATATAGTTTGAATTCCATCACTAGCACATTGCGGCCTATACACTATTTGATTCAAACCCAAATTGACCCAGTTCCCAAAATCGCTTCAAATGGATATTTTGGTATATATGAGCGGTTTTTGCTGCATAATTTTTACTCGACCAAGCCCCCATCACGATCGTTTAGAAGGAGAGAACGTAAAAGATCGGAATCCAATAGATCAACTCTTGATGAAGTCCAGTTTCAAAGGGCCTTATCCCAGTTGTTGCCTAGATTTACACCTGAAGAGCTTTGCAATGTTATAACTCAGCAAGACAATCCTTTTGTGTGTTTAGAGTTGTTCAATTGGGCATCACAACAGCCGCGGTTCAGACATGATGTTTCTACTTATCACATTACGATAAAGAAACTTGGCATAGCTAAAATGTATCAAGAAATGGATGATGTTGTCAACCAAGTGCTTGCTATTTCTTACATTGGTTCTGAGGCGCTTTACAATTCCATTATCTATTTTTTCACGGAAGCTCGGAAGTTGACTAGAGCTGTCAATATATTTAAACACATGAGGAATAGCAGAAACATGGAGTGTAGGCCTTCAATCAGGACGTACAATATTCTTTTTACGGCCTTTTTGAGTAGAGGATCTAATTCTTACATAAATCACATGTATATGGAGACAAGCAGGTGTCTGTTTCGGCAAATGGTGGATGATGGGATTGAGCCTGATATTTACTCTTTGAATTCTATGATTAAGGGGTACGTACTTTCCCTTCATCTCAATGATGCACTTAGAATATTCCATCAGATGGGCGTGGTCTATAAATGCACACCAAATTCATTTTCCTACGATTATCTCATTCATGGGTTATGTTGCCAAGGCCGAACAAATAATGCTAAGCAGCTGTGCAATGAAATGAAGAGCAAAGGGTTTATGCTGAGTAGTAAATCATACAACTCACTTGTGAATGCTTTGGCTCTTCATGGAGAGGTTGAGGAAGCACTGAAGTATCTGTGGGAGATGATTGAGAATCGAAGATCAGCTGAATTCATTACTTATAAGACAATACTTGATGAAATCTGCAGACAAGGAAGGGTTGGCGAAGCAATGAAATTGTTGAAGGACTTCGAAGAGAAAGACCTTCTGAGTGGGCATGTTTACAGGAAGCTTCTATATGTGCTTGAAGACGACTATGGAGATCCAAATGCCCATGCTCAATTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

416

Amino Acids

48.71

Weight (kDa)

9.05

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	172 - 218	4.8e-06	PPR repeat family
PPR_3	PF13812	238 - 295	5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	254 - 298	1.6e-07	PPR repeat family
PPR_1	PF12854	283 - 314	1.2e-08	PPR repeat
PPR_2	PF13041	285 - 333	1e-10	PPR repeat family
PPR	PF01535	324 - 351	6.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27800
fragaria_vesca	FvH4_3g33090 FvH4_3g33090
malus_domestica	MD03G1104000.v1.1 MD11G1131200.v1.1
prunus_persica	Prupe.6G095500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060431 RchiOBHm_Chr7g0223121 RchiOBHm_Chr7g0223131
rosa_laevigata	RLG00000001999 RLG00000002000 RLG00000035363
rosa_multiflora	Rmu_sc0002192.1_g000036 Rmu_sc0002608.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020390 Rroxscaffold_3G00236080
rosa_rugosa	Rorug05G0329900 Rorug07G0213100
rosa_samantha	Rh5AG394700 Rh5BG406800 Rh5CG430600 Rh5DG421900 Rh7AG358300 Rh7BG346400 Rh7CG376600 Rh7DG353700
rosa_wichuraiana	Rw5G037120 Rw7G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	326, 1080
AarI	CACCTGC	1 cut(s)	696
Acc36I	ACCTGC	1 cut(s)	696
AccB7I	CCANNNNNTGG	1 cut(s)	829
AccBSI	CCGCTC	1 cut(s)	157
AccII	CGCG	1 cut(s)	388
AciI	CCGC	4 cut(s)	76, 157, 386, 388
AclWI	GGATC	2 cut(s)	673, 1214
AcsI	RAATTY	4 cut(s)	55, 763, 856, 1067
AcuI	CTGAAG	2 cut(s)	327, 1046
AfaI	GTAC	3 cut(s)	632, 782, 786
AfiI	CCNNNNNNNGG	1 cut(s)	829
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	9 cut(s)	55, 98, 132, 269, 367, 621, 763, 1141, 1205
AjuI	GAANNNNNNNTTGG	2 cut(s)	847, 879
AluBI	AGCT	7 cut(s)	313, 443, 548, 566, 925, 1064, 1189
AluI	AGCT	7 cut(s)	313, 443, 548, 566, 925, 1064, 1189
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	2 cut(s)	673, 1214
AoxI	GGCC	5 cut(s)	77, 273, 614, 648, 901
ApeKI	GCWGC	2 cut(s)	166, 922
ApoI	RAATTY	4 cut(s)	55, 763, 856, 1067
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
Asp700I	GAANNNNTTC	1 cut(s)	1145
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	273
AsuII	TTCGAA	1 cut(s)	1149
BaeI	ACNNNNGTAYC	2 cut(s)	1013, 1046
BarI	GAAGNNNNNNTAC	2 cut(s)	777, 809
BbsI	GAAGAC	1 cut(s)	1212
BbvI	GCAGC	2 cut(s)	153, 934
BccI	CCATC	5 cut(s)	68, 202, 728, 823, 831
BceAI	ACGGC	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	3 cut(s)	66, 294, 561
BfmI	CTRYAG	1 cut(s)	1102
BfoI	RGCGCY	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	696
BisI	GCNGC	4 cut(s)	77, 167, 386, 923
BlpI	GCTNAGC	1 cut(s)	918
BlsI	GCNGC	4 cut(s)	78, 168, 387, 924
BmgT120I	GGNCC	1 cut(s)	273
BmrI	ACTGGG	2 cut(s)	107, 277
BmsI	GCATC	2 cut(s)	383, 796
BmuI	ACTGGG	2 cut(s)	107, 277
BpiI	GAAGAC	1 cut(s)	1212
Bpu1102I	GCTNAGC	1 cut(s)	918
Bpu14I	TTCGAA	1 cut(s)	1149
BsaAI	YACGTR	1 cut(s)	784
BsaBI	GATNNNNATC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	386, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse1I	ACTGG	3 cut(s)	113, 262, 283
Bse3DI	GCAATG	4 cut(s)	71, 325, 937, 1134
Bse8I	GATNNNNATC	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	386, 898
BseGI	GGATG	3 cut(s)	40, 469, 736
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMI	GCAATG	4 cut(s)	71, 325, 937, 1134
BseMII	CTCAG	4 cut(s)	344, 498, 950, 1157
BseNI	ACTGG	3 cut(s)	113, 262, 283
BseXI	GCAGC	2 cut(s)	153, 934
Bsh1236I	CGCG	1 cut(s)	388
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	5 cut(s)	79, 275, 616, 650, 903
BsiEI	CGRYCG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	1 cut(s)	692
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	5 cut(s)	79, 275, 616, 650, 903
Bsp119I	TTCGAA	1 cut(s)	1149
Bsp143I	GATC	6 cut(s)	200, 227, 242, 665, 1058, 1219
Bsp1720I	GCTNAGC	1 cut(s)	918
BspACI	CCGC	4 cut(s)	76, 157, 386, 388
BspANI	GGCC	5 cut(s)	79, 275, 616, 650, 903
BspCNI	CTCAG	4 cut(s)	343, 499, 951, 1158
BspFNI	CGCG	1 cut(s)	388
BspMAI	CTGCAG	1 cut(s)	1106
BspMI	ACCTGC	1 cut(s)	696
BspPI	GGATC	2 cut(s)	673, 1214
BspQI	GCTCTTC	3 cut(s)	303, 935, 1005
BspT104I	TTCGAA	1 cut(s)	1149
BsrBI	CCGCTC	1 cut(s)	157
BsrDI	GCAATG	4 cut(s)	71, 325, 937, 1134
BsrI	ACTGG	3 cut(s)	113, 262, 283
BssECI	CCNNGG	2 cut(s)	386, 898
BssMI	GATC	6 cut(s)	200, 227, 242, 665, 1058, 1219
BssT1I	CCWWGG	1 cut(s)	898
Bst6I	CTCTTC	4 cut(s)	303, 935, 1005, 1146
BstBAI	YACGTR	1 cut(s)	784
BstBI	TTCGAA	1 cut(s)	1149
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	6 cut(s)	330, 507, 812, 918, 959, 1166
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	40, 469, 736
BstFNI	CGCG	1 cut(s)	388
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	6 cut(s)	203, 230, 245, 668, 1061, 1222
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	6 cut(s)	200, 227, 242, 665, 1058, 1219
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNSI	RCATGY	2 cut(s)	691, 1178
BstSFI	CTRYAG	1 cut(s)	1102
BstSNI	TACGTA	1 cut(s)	784
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	153, 934
BstV2I	GAAGAC	1 cut(s)	1212
BstX2I	RGATCY	2 cut(s)	665, 1219
BstYI	RGATCY	2 cut(s)	665, 1219
BsuRI	GGCC	5 cut(s)	79, 275, 616, 650, 903
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	40, 469, 736
BtsIMutI	CAGTG	1 cut(s)	1022
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	486
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	273
Cfr42I	CCGCGG	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	631, 781, 785
CviAII	CATG	8 cut(s)	398, 586, 604, 688, 884, 1004, 1175, 1232
CviQI	GTAC	3 cut(s)	631, 781, 785
DdeI	CTNAG	6 cut(s)	330, 507, 812, 918, 959, 1166
DpnI	GATC	6 cut(s)	202, 229, 244, 667, 1060, 1221
DpnII	GATC	6 cut(s)	200, 227, 242, 665, 1058, 1219
DraI	TTTAAA	1 cut(s)	580
Eam1104I	CTCTTC	4 cut(s)	303, 935, 1005, 1146
EarI	CTCTTC	4 cut(s)	303, 935, 1005, 1146
Eco105I	TACGTA	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	898
Eco147I	AGGCCT	1 cut(s)	616
Eco57I	CTGAAG	2 cut(s)	327, 1046
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRI	GAATTC	3 cut(s)	55, 763, 1067
EcoT14I	CCWWGG	1 cut(s)	898
ErhI	CCWWGG	1 cut(s)	898
FaeI	CATG	8 cut(s)	401, 589, 607, 691, 887, 1007, 1178, 1235
FatI	CATG	8 cut(s)	397, 585, 603, 687, 883, 1003, 1174, 1231
Fnu4HI	GCNGC	4 cut(s)	77, 167, 386, 923
FokI	GGATG	3 cut(s)	47, 476, 743
Fsp4HI	GCNGC	4 cut(s)	77, 167, 386, 923
FspBI	CTAG	3 cut(s)	66, 294, 561
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	4 cut(s)	77, 167, 386, 923
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	5 cut(s)	79, 275, 616, 650, 903
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	8 cut(s)	401, 589, 607, 691, 887, 1007, 1178, 1235
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	2 cut(s)	475, 558
HindII	GTYRAC	2 cut(s)	475, 558
HindIII	AAGCTT	1 cut(s)	1187
HinfI	GANTC	3 cut(s)	94, 233, 1051
Hpy166II	GTNNAC	3 cut(s)	475, 558, 1180
Hpy188I	TCNGA	7 cut(s)	232, 395, 508, 552, 828, 1167, 1244
Hpy188III	TCNNGA	4 cut(s)	198, 251, 455, 625
Hpy8I	GTNNAC	3 cut(s)	475, 558, 1180
HpyAV	CCTTC	6 cut(s)	204, 627, 803, 1107, 1135, 1172
HpyCH4IV	ACGT	3 cut(s)	220, 629, 783
HpyCH4V	TGCA	6 cut(s)	169, 318, 809, 849, 930, 1104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	6 cut(s)	330, 507, 812, 918, 959, 1166
HpySE526I	ACGT	3 cut(s)	220, 629, 783
Hsp92II	CATG	8 cut(s)	401, 589, 607, 691, 887, 1007, 1178, 1235
HspAI	GCGC	1 cut(s)	512
KspI	CCGCGG	1 cut(s)	389
Kzo9I	GATC	6 cut(s)	200, 227, 242, 665, 1058, 1219
LguI	GCTCTTC	3 cut(s)	303, 935, 1005
LpnPI	CCDG	8 cut(s)	126, 275, 296, 318, 610, 691, 759, 1168
Lsp1109I	GCAGC	2 cut(s)	153, 934
LweI	GCATC	2 cut(s)	383, 796
MaeI	CTAG	3 cut(s)	66, 294, 561
MaeII	ACGT	3 cut(s)	220, 629, 783
MalI	GATC	6 cut(s)	202, 229, 244, 667, 1060, 1221
MbiI	CCGCTC	1 cut(s)	157
MboI	GATC	6 cut(s)	200, 227, 242, 665, 1058, 1219
MboII	GAAGA	6 cut(s)	320, 952, 992, 1068, 1163, 1217
MfeI	CAATTG	1 cut(s)	367
MflI	RGATCY	2 cut(s)	665, 1219
MnlI	CCTC	5 cut(s)	502, 582, 656, 1003, 1009
MroXI	GAANNNNTTC	1 cut(s)	1145
MseI	TTAA	2 cut(s)	579, 774
MslI	CAYNNNNRTG	2 cut(s)	692, 801
MspA1I	CMGCKG	3 cut(s)	388, 925, 1064
MunI	CAATTG	1 cut(s)	367
Mva1269I	GAATGC	1 cut(s)	994
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	6 cut(s)	200, 227, 242, 665, 1058, 1219
NlaIII	CATG	8 cut(s)	401, 589, 607, 691, 887, 1007, 1178, 1235
NspI	RCATGY	2 cut(s)	691, 1178
NspV	TTCGAA	1 cut(s)	1149
PaqCI	CACCTGC	1 cut(s)	696
PceI	AGGCCT	1 cut(s)	616
PciI	ACATGT	1 cut(s)	687
PciSI	GCTCTTC	3 cut(s)	303, 935, 1005
PctI	GAATGC	1 cut(s)	994
PdmI	GAANNNNTTC	1 cut(s)	1145
PfeI	GAWTC	3 cut(s)	94, 233, 1051
PflMI	CCANNNNNTGG	1 cut(s)	829
PkrI	GCNGC	4 cut(s)	78, 168, 387, 924
Ple19I	CGATCG	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	784
PscI	ACATGT	1 cut(s)	687
PsiI	TTATAA	2 cut(s)	326, 1080
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	1106
PsuI	RGATCY	2 cut(s)	665, 1219
PvuI	CGATCG	1 cut(s)	203
PvuII	CAGCTG	2 cut(s)	925, 1064
RsaI	GTAC	3 cut(s)	632, 782, 786
RsaNI	GTAC	3 cut(s)	631, 781, 785
RseI	CAYNNNNRTG	2 cut(s)	692, 801
SacII	CCGCGG	1 cut(s)	389
SapI	GCTCTTC	3 cut(s)	303, 935, 1005
SaqAI	TTAA	2 cut(s)	579, 774
SatI	GCNGC	4 cut(s)	77, 167, 386, 923
Sau3AI	GATC	6 cut(s)	200, 227, 242, 665, 1058, 1219
Sau96I	GGNCC	1 cut(s)	273
SfaNI	GCATC	2 cut(s)	383, 796
SfcI	CTRYAG	1 cut(s)	1102
Sfr303I	CCGCGG	1 cut(s)	389
SfuI	TTCGAA	1 cut(s)	1149
SgrBI	CCGCGG	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	692, 801
SnaBI	TACGTA	1 cut(s)	784
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	4 cut(s)	76, 157, 386, 388
SspI	AATATT	2 cut(s)	637, 819
SspMI	CTAG	3 cut(s)	66, 294, 561
StuI	AGGCCT	1 cut(s)	616
StyI	CCWWGG	1 cut(s)	898
TaiI	ACGT	3 cut(s)	223, 632, 786
TaqI	TCGA	3 cut(s)	182, 1054, 1149
TauI	GCSGC	2 cut(s)	79, 388
TfiI	GAWTC	3 cut(s)	94, 233, 1051
Tru1I	TTAA	2 cut(s)	579, 774
Tru9I	TTAA	2 cut(s)	579, 774
TscAI	CASTG	1 cut(s)	1029
TseI	GCWGC	2 cut(s)	166, 922
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	1 cut(s)	1029
Van91I	CCANNNNNTGG	1 cut(s)	829
XapI	RAATTY	4 cut(s)	55, 763, 856, 1067
XceI	RCATGY	2 cut(s)	691, 1178
XmnI	GAANNNNTTC	1 cut(s)	1145
XspI	CTAG	3 cut(s)	66, 294, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.