Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005837

Physical Location & Seq

Genomic Coordinates Forward (+)

43296297 .. 43299298

Gene Structure 3002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGATTTCTCTTCGTGGACATTGCTGCAGAAATAGCTGCACGCTCAAAAACCTCAATAGCAAGCACTTTTGTGAAAACCCTTTTCATCAATACTTGTCCAACCTGAAGAGCATGGATGCTCATTCATATAGTTTGAATCCCATTAATAGTACTCTGAGGCCAATACACTATTTGACTCAACCCCACTTTGACATAGTACCCAAAGTTGCTTCCAATGGATTTCTTGGTATGTACGAGCGATTTTCATTGCATAAGTTTTACTCATCACCATCTCGATCTTTTAGAAGGAGAGAAAATAAAAGATTAGAATCCAGTAGAAAACCAACCCTTAATGAAGCCCAATTTCAAAGGTCTGTATCCCAGTTGTTGCCTAGATTTACACCTGAAGAACTGTGCGATGTTATAACTAAGCAAGATGATCCTCTTGTGTGTTTAGAGTTGTTCAATTGGGCATCGCAACAGTCGCGGTTCAAACATGATATGTACGAAGAGATGGATGACATTGTCAACCAAGTGCTTGCTATCTCTCACATGGGTTCTGAGGCGCTTTTCAATTCCATTATCTACTTTTTCACAGAAGCTCGGAAGTTGACTAGAGCTGTCAATATATTTAAACACATGAAGAATAGTAGAAACATGGACTGTAGGCCTTCTGTTAGGACATACAATATTCTGTTTACTGCCTTTTTGAGTAGAGGATGTAATACCTACATAAATCATATGTATATGGAAACCATAAGATGTCTGTTTAGGCAAATGGTGAATGATGGGATTGAACCCGATATTTATACTTTGAATTCAATGATTAAGGGGTATGTTCTTTCCCTTCATGTGAATGATGCACTTAGAGTATTCCATCAGATGGGTGTGGTCTATAACTGCCTGCCAAACACATTTTCCTATGATTATCTCATCCATGGATTATGTGCTCAAGGCCGAACAAACAATGCTAAGCAGTTGTGCAACGAAATGAAGACTAAAGGGTTTATCACGAGTAGTAAATCCTACAACTCGCTTGTGAATGCTTTGGCTCTTTGTGGAGAGATTGAGGAGGCAGTGAAGTATTTGTGGGAGATGATTGAGAAGCGAAGGTCAACTGAATTCATTACTTATAAGACAGTACTTGATGAAATGTGCAGACAAGGACAGGTTGGACAAGCAATGAAGTTGCTAAAAGAATTTAAAAAGAAAGACATTCTGAGTGGGCATGCTTACAGGAAGCTCCGATATGTGCTTGAAGATGACTATGGAGATTCTGTCTCCCATACTCGATTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

426

Amino Acids

49.71

Weight (kDa)

9.04

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	183 - 229	2.4e-06	PPR repeat family
PPR_2	PF13041	237 - 272	4.5e-06	PPR repeat family
PPR_3	PF13812	249 - 306	3.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	264 - 309	4.9e-08	PPR repeat family
PPR_1	PF12854	293 - 325	1.5e-08	PPR repeat
PPR_2	PF13041	296 - 344	6.1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27800
fragaria_vesca	FvH4_3g33090 FvH4_3g33090
malus_domestica	MD03G1104000.v1.1 MD11G1131200.v1.1
prunus_persica	Prupe.6G095500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060431 RchiOBHm_Chr7g0223121 RchiOBHm_Chr7g0223131
rosa_laevigata	RLG00000001999 RLG00000002000 RLG00000035363
rosa_multiflora	Rmu_sc0002192.1_g000036 Rmu_sc0002608.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020390 Rroxscaffold_3G00236080
rosa_rugosa	Rorug05G0329900 Rorug07G0213100
rosa_samantha	Rh5AG394700 Rh5BG406800 Rh5CG430600 Rh5DG421900 Rh7AG358300 Rh7BG346400 Rh7CG376600 Rh7DG353700
rosa_wichuraiana	Rw5G037120 Rw7G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	404, 1113
AccB7I	CCANNNNNTGG	1 cut(s)	862
AccII	CGCG	1 cut(s)	466
AciI	CCGC	1 cut(s)	466
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	796, 1100, 1178
AcuI	CTGAAG	2 cut(s)	125, 405
AfaI	GTAC	5 cut(s)	151, 198, 233, 485, 1122
AfiI	CCNNNNNNNGG	1 cut(s)	862
AgsI	TTSAA	9 cut(s)	136, 347, 445, 472, 553, 776, 796, 801, 1238
AjuI	GAANNNNNNNTTGG	2 cut(s)	880, 912
AleI	CACNNNNGTG	1 cut(s)	69
AluBI	AGCT	5 cut(s)	36, 581, 599, 1222, 1278
AluI	AGCT	5 cut(s)	36, 581, 599, 1222, 1278
Alw21I	GWGCWC	1 cut(s)	931
Alw26I	GTCTC	1 cut(s)	1264
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	3 cut(s)	158, 647, 934
ApeKI	GCWGC	2 cut(s)	24, 36
ApoI	RAATTY	3 cut(s)	796, 1100, 1178
AseI	ATTAAT	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	258, 772
BauI	CACGAG	1 cut(s)	991
BbsI	GAAGAC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	931
BbvI	GCAGC	2 cut(s)	11, 23
BccI	CCATC	5 cut(s)	277, 487, 761, 856, 864
BciVI	GTATCC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	1264
BfaI	CTAG	2 cut(s)	372, 594
BfmI	CTRYAG	2 cut(s)	25, 643
BfoI	RGCGCY	1 cut(s)	548
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	2 cut(s)	25, 37
BlpI	GCTNAGC	1 cut(s)	951
BlsI	GCNGC	2 cut(s)	26, 38
BmcAI	AGTACT	2 cut(s)	151, 1122
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	3 cut(s)	106, 461, 829
BmuI	ACTGGG	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	980
Bpu1102I	GCTNAGC	1 cut(s)	951
BpuEI	CTTGAG	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	916
BsaXI	ACNNNNNCTCC	2 cut(s)	1242, 1272
Bsc4I	CCNNNNNNNGG	1 cut(s)	862
Bse1I	ACTGG	2 cut(s)	312, 361
Bse3DI	GCAATG	3 cut(s)	19, 245, 1167
Bse8I	GATNNNNATC	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	916
BseGI	GGATG	4 cut(s)	121, 502, 704, 912
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	862
BseMI	GCAATG	3 cut(s)	19, 245, 1167
BseMII	CTCAG	3 cut(s)	146, 531, 1190
BseNI	ACTGG	2 cut(s)	312, 361
BseRI	GAGGAG	1 cut(s)	1064
BseXI	GCAGC	2 cut(s)	11, 23
BsgI	GTGCAG	2 cut(s)	22, 1156
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	3 cut(s)	160, 649, 936
BsiHKAI	GWGCWC	1 cut(s)	931
BslI	CCNNNNNNNGG	1 cut(s)	862
BsmAI	GTCTC	1 cut(s)	1264
BsmI	GAATGC	1 cut(s)	1027
BsnI	GGCC	3 cut(s)	160, 649, 936
Bsp1286I	GDGCHC	1 cut(s)	931
Bsp143I	GATC	2 cut(s)	275, 418
Bsp1720I	GCTNAGC	1 cut(s)	951
Bsp19I	CCATGG	1 cut(s)	916
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	3 cut(s)	160, 649, 936
BspCNI	CTCAG	3 cut(s)	147, 532, 1191
BspFNI	CGCG	1 cut(s)	466
BspMAI	CTGCAG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	101
BsrDI	GCAATG	3 cut(s)	19, 245, 1167
BsrI	ACTGG	2 cut(s)	312, 361
BssECI	CCNNGG	1 cut(s)	916
BssMI	GATC	2 cut(s)	275, 418
BssSI	CACGAG	1 cut(s)	991
BssT1I	CCWWGG	1 cut(s)	916
Bst2BI	CACGAG	1 cut(s)	991
Bst4CI	ACNGT	4 cut(s)	393, 462, 644, 1120
Bst6I	CTCTTC	3 cut(s)	15, 101, 483
BstC8I	GCNNGC	5 cut(s)	41, 62, 519, 884, 1209
BstDEI	CTNAG	6 cut(s)	155, 408, 540, 845, 951, 1199
BstDSI	CCRYGG	1 cut(s)	916
BstF5I	GGATG	4 cut(s)	121, 502, 704, 912
BstFNI	CGCG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	2 cut(s)	278, 421
BstMAI	GTCTC	1 cut(s)	1264
BstMBI	GATC	2 cut(s)	275, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 463
BstNSI	RCATGY	1 cut(s)	1211
BstSFI	CTRYAG	2 cut(s)	25, 643
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	11, 23
BstV2I	GAAGAC	1 cut(s)	980
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	160, 649, 936
BtgI	CCRYGG	1 cut(s)	916
BtgZI	GCGATG	2 cut(s)	411, 438
BtsCI	GGATG	4 cut(s)	121, 502, 704, 912
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	1 cut(s)	1062
Cac8I	GCNNGC	5 cut(s)	41, 62, 519, 884, 1209
CfoI	GCGC	1 cut(s)	547
Csp6I	GTAC	5 cut(s)	150, 197, 232, 484, 1121
CviAII	CATG	8 cut(s)	112, 476, 532, 619, 637, 830, 917, 1208
CviQI	GTAC	5 cut(s)	150, 197, 232, 484, 1121
DdeI	CTNAG	6 cut(s)	155, 408, 540, 845, 951, 1199
DpnI	GATC	2 cut(s)	277, 420
DpnII	GATC	2 cut(s)	275, 418
DraI	TTTAAA	2 cut(s)	613, 1183
Eam1104I	CTCTTC	3 cut(s)	15, 101, 483
EarI	CTCTTC	3 cut(s)	15, 101, 483
Eco130I	CCWWGG	1 cut(s)	916
Eco147I	AGGCCT	1 cut(s)	649
Eco57I	CTGAAG	2 cut(s)	125, 405
EcoRI	GAATTC	2 cut(s)	796, 1100
EcoT14I	CCWWGG	1 cut(s)	916
ErhI	CCWWGG	1 cut(s)	916
FaeI	CATG	8 cut(s)	115, 479, 535, 622, 640, 833, 920, 1211
FatI	CATG	8 cut(s)	111, 475, 531, 618, 636, 829, 916, 1207
FauNDI	CATATG	1 cut(s)	720
Fnu4HI	GCNGC	2 cut(s)	25, 37
FokI	GGATG	4 cut(s)	128, 509, 711, 899
Fsp4HI	GCNGC	2 cut(s)	25, 37
FspBI	CTAG	2 cut(s)	372, 594
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	2 cut(s)	25, 37
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	3 cut(s)	160, 649, 936
HhaI	GCGC	1 cut(s)	547
Hin1II	CATG	8 cut(s)	115, 479, 535, 622, 640, 833, 920, 1211
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HincII	GTYRAC	3 cut(s)	508, 591, 1095
HindII	GTYRAC	3 cut(s)	508, 591, 1095
HinfI	GANTC	4 cut(s)	136, 175, 308, 1253
HphI	GGTGA	2 cut(s)	258, 772
Hpy166II	GTNNAC	5 cut(s)	17, 508, 591, 678, 1095
Hpy188I	TCNGA	6 cut(s)	156, 541, 585, 861, 1200, 1226
Hpy188III	TCNNGA	2 cut(s)	273, 991
Hpy8I	GTNNAC	5 cut(s)	17, 508, 591, 678, 1095
HpyAV	CCTTC	4 cut(s)	279, 660, 836, 1083
HpyCH4III	ACNGT	4 cut(s)	393, 462, 644, 1120
HpyCH4V	TGCA	6 cut(s)	27, 39, 250, 842, 963, 1137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 463
HpyF3I	CTNAG	6 cut(s)	155, 408, 540, 845, 951, 1199
Hsp92II	CATG	8 cut(s)	115, 479, 535, 622, 640, 833, 920, 1211
HspAI	GCGC	1 cut(s)	545
Kzo9I	GATC	2 cut(s)	275, 418
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	1227
LpnPI	CCDG	7 cut(s)	116, 325, 374, 396, 896, 1133, 1201
Lsp1109I	GCAGC	2 cut(s)	11, 23
LweI	GCATC	3 cut(s)	106, 461, 829
MaeI	CTAG	2 cut(s)	372, 594
MalI	GATC	2 cut(s)	277, 420
MboI	GATC	2 cut(s)	275, 418
MboII	GAAGA	6 cut(s)	118, 398, 500, 634, 985, 1250
MfeI	CAATTG	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	931
MluCI	AATT	6 cut(s)	341, 445, 553, 796, 1100, 1178
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	123, 1132
MnlI	CCTC	7 cut(s)	62, 150, 432, 535, 689, 1042, 1045
MseI	TTAA	5 cut(s)	144, 330, 612, 807, 1182
MslI	CAYNNNNRTG	2 cut(s)	69, 834
MunI	CAATTG	1 cut(s)	445
Mva1269I	GAATGC	1 cut(s)	1027
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	2 cut(s)	33, 463
NcoI	CCATGG	1 cut(s)	916
NdeI	CATATG	1 cut(s)	720
NdeII	GATC	2 cut(s)	275, 418
NlaIII	CATG	8 cut(s)	115, 479, 535, 622, 640, 833, 920, 1211
NspI	RCATGY	1 cut(s)	1211
OliI	CACNNNNGTG	1 cut(s)	69
PaeI	GCATGC	1 cut(s)	1211
PceI	AGGCCT	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	1027
PfeI	GAWTC	3 cut(s)	136, 308, 1253
PflFI	GACNNNGTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	862
PkrI	GCNGC	2 cut(s)	26, 38
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	144
PsiI	TTATAA	2 cut(s)	404, 1113
PstI	CTGCAG	1 cut(s)	29
PsyI	GACNNNGTC	1 cut(s)	503
RsaI	GTAC	5 cut(s)	151, 198, 233, 485, 1122
RsaNI	GTAC	5 cut(s)	150, 197, 232, 484, 1121
RseI	CAYNNNNRTG	2 cut(s)	69, 834
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	5 cut(s)	144, 330, 612, 807, 1182
SatI	GCNGC	2 cut(s)	25, 37
Sau3AI	GATC	2 cut(s)	275, 418
ScaI	AGTACT	2 cut(s)	151, 1122
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	931
SfaNI	GCATC	3 cut(s)	106, 461, 829
SfcI	CTRYAG	2 cut(s)	25, 643
SmiMI	CAYNNNNRTG	2 cut(s)	69, 834
SmlI	CTYRAG	1 cut(s)	930
SmoI	CTYRAG	1 cut(s)	930
SphI	GCATGC	1 cut(s)	1211
Sse9I	AATT	6 cut(s)	341, 445, 553, 796, 1100, 1178
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	1 cut(s)	466
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	2 cut(s)	372, 594
StuI	AGGCCT	1 cut(s)	649
StyI	CCWWGG	1 cut(s)	916
TaaI	ACNGT	4 cut(s)	393, 462, 644, 1120
TaqI	TCGA	2 cut(s)	274, 1270
TasI	AATT	6 cut(s)	341, 445, 553, 796, 1100, 1178
TatI	WGTACW	2 cut(s)	149, 1120
TfiI	GAWTC	3 cut(s)	136, 308, 1253
Tru1I	TTAA	5 cut(s)	144, 330, 612, 807, 1182
Tru9I	TTAA	5 cut(s)	144, 330, 612, 807, 1182
TscAI	CASTG	1 cut(s)	1062
TseI	GCWGC	2 cut(s)	24, 36
TspRI	CASTG	1 cut(s)	1062
Tth111I	GACNNNGTC	1 cut(s)	503
Van91I	CCANNNNNTGG	1 cut(s)	862
VspI	ATTAAT	1 cut(s)	144
XapI	RAATTY	3 cut(s)	796, 1100, 1178
XceI	RCATGY	1 cut(s)	1211
XspI	CTAG	2 cut(s)	372, 594
ZrmI	AGTACT	2 cut(s)	151, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.