Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005837

Physical Location & Seq

Genomic Coordinates Forward (+)

47102737 .. 47104053

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG353700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGATTCCTCTTCGTGGACATTGCTGCAGAAATAGCTGCACGCTCAAAAACCTCAATAGCAAGCACTTTTGTGAAAACCCTTTTCATCAATACTTGTCCAACCTGAAGAGCATGGATGCTCATTCATATAGTTTGAATCCCATTAATAGTACTCTGAGGTCAATACACTATTTGACTCAACCCCACTTTGACATAGTACCCAAAGTTGCTTCCAGTGGATTTCTTGGTATATACGAGCGATTTTCATTGCATAAGTTTTACTCATCACCATCTCGATCTTTTAGAAGGAGAGAAAATAAAAGATTAGAATCCAGTAGAAAACCAACCCTTAATGAAGCCCAATTTCAAAGGTCTGTATCCCAGTTGTCGCCTAGATTTACACCTGAAGAACTGTGCGATGTTATAACTAAGCAAGATGATCCTCTTGTGTGTTTAGAGTTGTTCAATTGGGCATCGCAACAGTCGCGGTTCAAACATGATGTTTACAGCTATCACATTACAATAAAGAAACTTGGTGTAGCTAAGATGTACGAAGAGATGGATGACATTGTCAACCAAGTGCTTGCTATCTCTCACATGGGTTCTGAGGCACTTTTCAATTCCATTATCTACTTTTTCACAGAAGCTCGGAAGTTGACTAGAGCTGTCAATATATTTAAACACATGAAGAATAATAGAAACATGGACTGTAGGCCTTCTGTTAGGACATACAATATTCTGTTTACTGCCTTTTTGAGTAGGGGATGTAATACCTACATAAATCACATGTATATGGAAACCATAAGATGTCTGTTTAGGCAAATGGTGAATGATGGGATTGAACCCGATATTTATACTTTGAATTCAATGATTAAGGGGTATGTTCTTTCCCTTCATGTGAATGATGCACTTAGAGTATTCCATCAGATGGGTGTGGTCTATAACTGCCTGCCAAACACATTTTCCTATGATTATCTCATCCATGGATTATGTGCTCAAGGCCGAACAACCAATGCTAAGCAGTTGTGCAACGAAATGAAGACTAAAGGGTTTATCCCGAGTAGTAAATCCTACAACTCGCTTGTGAATGCTTTGGCTCTTTGTGGAGAGATTGAGGAGGCAGTGAAGTATTTGTGGGAGATGATTGAGAAGCGAAGGTCAACTGAATTCATTACTTATAAGACAGTACTTGATGAAATGTGCAGACAAGGACGGGTTGGACAAGCAATGAAGTTGCTAAAAGAATTTCAAAAGAAAGACATTCTGAGTGGGCATGCTTACAGGAAGCTCCAATATGTGCTTGAAGATGACTATGGAGATTTTGTCTCCCATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

438

Amino Acids

51.06

Weight (kDa)

9.07

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	198 - 244	2.1e-06	PPR repeat family
PPR_2	PF13041	252 - 287	4.9e-06	PPR repeat family
PPR_3	PF13812	264 - 321	3.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	281 - 324	1.4e-07	PPR repeat family
PPR_1	PF12854	308 - 340	1e-07	PPR repeat
PPR_2	PF13041	311 - 359	5.4e-12	PPR repeat family
TPR_24	PF23276	313 - 409	7.5e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27800
fragaria_vesca	FvH4_3g33090 FvH4_3g33090
malus_domestica	MD03G1104000.v1.1 MD11G1131200.v1.1
prunus_persica	Prupe.6G095500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060431 RchiOBHm_Chr7g0223121 RchiOBHm_Chr7g0223131
rosa_laevigata	RLG00000001999 RLG00000002000 RLG00000035363
rosa_multiflora	Rmu_sc0002192.1_g000036 Rmu_sc0002608.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020390 Rroxscaffold_3G00236080
rosa_rugosa	Rorug05G0329900 Rorug07G0213100
rosa_samantha	Rh5AG394700 Rh5BG406800 Rh5CG430600 Rh5DG421900 Rh7AG358300 Rh7BG346400 Rh7CG376600 Rh7DG353700
rosa_wichuraiana	Rw5G037120 Rw7G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	404, 1158
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccII	CGCG	1 cut(s)	466
AciI	CCGC	1 cut(s)	466
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	841, 1145, 1223
AcuI	CTGAAG	2 cut(s)	125, 405
AfaI	GTAC	4 cut(s)	151, 198, 530, 1167
AfiI	CCNNNNNNNGG	2 cut(s)	14, 907
AflIII	ACRYGT	1 cut(s)	765
AjuI	GAANNNNNNNTTGG	2 cut(s)	925, 957
AleI	CACNNNNGTG	1 cut(s)	69
AluBI	AGCT	6 cut(s)	36, 489, 521, 626, 644, 1267
AluI	AGCT	6 cut(s)	36, 489, 521, 626, 644, 1267
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	1 cut(s)	1309
AlwI	GGATC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	1036
AoxI	GGCC	2 cut(s)	692, 979
ApeKI	GCWGC	2 cut(s)	24, 36
ApoI	RAATTY	3 cut(s)	841, 1145, 1223
AseI	ATTAAT	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	258, 817
AvaI	CYCGRG	1 cut(s)	1036
BbsI	GAAGAC	1 cut(s)	1025
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	2 cut(s)	11, 23
BccI	CCATC	5 cut(s)	277, 532, 806, 901, 909
BciVI	GTATCC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	1309
BfaI	CTAG	2 cut(s)	372, 639
BfmI	CTRYAG	2 cut(s)	25, 688
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	2 cut(s)	25, 37
BlpI	GCTNAGC	1 cut(s)	996
BlsI	GCNGC	2 cut(s)	26, 38
BmcAI	AGTACT	2 cut(s)	151, 1167
BmeT110I	CYCGRG	1 cut(s)	1036
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	3 cut(s)	106, 461, 874
BmuI	ACTGGG	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	1025
Bpu1102I	GCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	1 cut(s)	960
BsaBI	GATNNNNATC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	961
BsaXI	ACNNNNNCTCC	2 cut(s)	1287, 1317
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 907
Bse1I	ACTGG	3 cut(s)	213, 312, 361
Bse3DI	GCAATG	3 cut(s)	19, 245, 1212
Bse8I	GATNNNNATC	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	961
BseGI	GGATG	4 cut(s)	121, 547, 749, 957
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	14, 907
BseMI	GCAATG	3 cut(s)	19, 245, 1212
BseMII	CTCAG	3 cut(s)	146, 576, 1235
BseNI	ACTGG	3 cut(s)	213, 312, 361
BseRI	GAGGAG	1 cut(s)	1109
BseXI	GCAGC	2 cut(s)	11, 23
BsgI	GTGCAG	2 cut(s)	22, 1201
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	2 cut(s)	694, 981
BsiHKAI	GWGCWC	1 cut(s)	976
BsiHKCI	CYCGRG	1 cut(s)	1036
BslI	CCNNNNNNNGG	2 cut(s)	14, 907
BsmAI	GTCTC	1 cut(s)	1309
BsmI	GAATGC	1 cut(s)	1072
BsnI	GGCC	2 cut(s)	694, 981
BsoBI	CYCGRG	1 cut(s)	1036
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp143I	GATC	2 cut(s)	275, 418
Bsp1720I	GCTNAGC	1 cut(s)	996
Bsp19I	CCATGG	1 cut(s)	961
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	2 cut(s)	694, 981
BspCNI	CTCAG	3 cut(s)	147, 577, 1236
BspFNI	CGCG	1 cut(s)	466
BspMAI	CTGCAG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	101
BsrDI	GCAATG	3 cut(s)	19, 245, 1212
BsrI	ACTGG	3 cut(s)	213, 312, 361
BssECI	CCNNGG	1 cut(s)	961
BssMI	GATC	2 cut(s)	275, 418
BssT1I	CCWWGG	1 cut(s)	961
Bst4CI	ACNGT	4 cut(s)	393, 462, 689, 1165
Bst6I	CTCTTC	3 cut(s)	15, 101, 528
BstC8I	GCNNGC	5 cut(s)	41, 62, 564, 929, 1254
BstDEI	CTNAG	7 cut(s)	155, 408, 522, 585, 890, 996, 1244
BstDSI	CCRYGG	1 cut(s)	961
BstF5I	GGATG	4 cut(s)	121, 547, 749, 957
BstFNI	CGCG	1 cut(s)	466
BstKTI	GATC	2 cut(s)	278, 421
BstMAI	GTCTC	1 cut(s)	1309
BstMBI	GATC	2 cut(s)	275, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 463
BstNSI	RCATGY	2 cut(s)	769, 1256
BstSFI	CTRYAG	2 cut(s)	25, 688
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	11, 23
BstV2I	GAAGAC	1 cut(s)	1025
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	694, 981
BtgI	CCRYGG	1 cut(s)	961
BtgZI	GCGATG	2 cut(s)	411, 438
BtsCI	GGATG	4 cut(s)	121, 547, 749, 957
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	2 cut(s)	220, 1107
Cac8I	GCNNGC	5 cut(s)	41, 62, 564, 929, 1254
Csp6I	GTAC	4 cut(s)	150, 197, 529, 1166
CviAII	CATG	9 cut(s)	112, 476, 577, 664, 682, 766, 875, 962, 1253
CviQI	GTAC	4 cut(s)	150, 197, 529, 1166
DdeI	CTNAG	7 cut(s)	155, 408, 522, 585, 890, 996, 1244
DpnI	GATC	2 cut(s)	277, 420
DpnII	GATC	2 cut(s)	275, 418
DraI	TTTAAA	1 cut(s)	658
Eam1104I	CTCTTC	3 cut(s)	15, 101, 528
EarI	CTCTTC	3 cut(s)	15, 101, 528
Eco130I	CCWWGG	1 cut(s)	961
Eco147I	AGGCCT	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	125, 405
Eco88I	CYCGRG	1 cut(s)	1036
EcoRI	GAATTC	2 cut(s)	841, 1145
EcoT14I	CCWWGG	1 cut(s)	961
ErhI	CCWWGG	1 cut(s)	961
FaeI	CATG	9 cut(s)	115, 479, 580, 667, 685, 769, 878, 965, 1256
FatI	CATG	9 cut(s)	111, 475, 576, 663, 681, 765, 874, 961, 1252
Fnu4HI	GCNGC	2 cut(s)	25, 37
FokI	GGATG	4 cut(s)	128, 554, 756, 944
Fsp4HI	GCNGC	2 cut(s)	25, 37
FspBI	CTAG	2 cut(s)	372, 639
GluI	GCNGC	2 cut(s)	25, 37
HaeIII	GGCC	2 cut(s)	694, 981
Hin1II	CATG	9 cut(s)	115, 479, 580, 667, 685, 769, 878, 965, 1256
HincII	GTYRAC	3 cut(s)	553, 636, 1140
HindII	GTYRAC	3 cut(s)	553, 636, 1140
HinfI	GANTC	4 cut(s)	4, 136, 175, 308
HphI	GGTGA	2 cut(s)	258, 817
Hpy166II	GTNNAC	6 cut(s)	17, 484, 553, 636, 723, 1140
Hpy188I	TCNGA	5 cut(s)	156, 586, 630, 906, 1245
Hpy188III	TCNNGA	2 cut(s)	273, 1036
Hpy8I	GTNNAC	6 cut(s)	17, 484, 553, 636, 723, 1140
HpyAV	CCTTC	4 cut(s)	279, 705, 881, 1128
HpyCH4III	ACNGT	4 cut(s)	393, 462, 689, 1165
HpyCH4V	TGCA	6 cut(s)	27, 39, 250, 887, 1008, 1182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 463
HpyF3I	CTNAG	7 cut(s)	155, 408, 522, 585, 890, 996, 1244
Hsp92II	CATG	9 cut(s)	115, 479, 580, 667, 685, 769, 878, 965, 1256
Kzo9I	GATC	2 cut(s)	275, 418
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	1272
LpnPI	CCDG	7 cut(s)	116, 226, 325, 374, 396, 941, 1246
Lsp1109I	GCAGC	2 cut(s)	11, 23
LweI	GCATC	3 cut(s)	106, 461, 874
MaeI	CTAG	2 cut(s)	372, 639
MalI	GATC	2 cut(s)	277, 420
MboI	GATC	2 cut(s)	275, 418
MboII	GAAGA	6 cut(s)	118, 398, 545, 679, 1030, 1295
MfeI	CAATTG	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	6 cut(s)	341, 445, 598, 841, 1145, 1223
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	123, 1177
MnlI	CCTC	7 cut(s)	18, 62, 150, 432, 580, 1087, 1090
MseI	TTAA	4 cut(s)	144, 330, 657, 852
MslI	CAYNNNNRTG	3 cut(s)	69, 770, 879
MunI	CAATTG	1 cut(s)	445
Mva1269I	GAATGC	1 cut(s)	1072
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	2 cut(s)	33, 463
NcoI	CCATGG	1 cut(s)	961
NdeII	GATC	2 cut(s)	275, 418
NlaIII	CATG	9 cut(s)	115, 479, 580, 667, 685, 769, 878, 965, 1256
NspI	RCATGY	2 cut(s)	769, 1256
OliI	CACNNNNGTG	1 cut(s)	69
PaeI	GCATGC	1 cut(s)	1256
PceI	AGGCCT	1 cut(s)	694
PciI	ACATGT	1 cut(s)	765
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	1072
PfeI	GAWTC	3 cut(s)	4, 136, 308
PflFI	GACNNNGTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	907
PkrI	GCNGC	2 cut(s)	26, 38
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PscI	ACATGT	1 cut(s)	765
PshBI	ATTAAT	1 cut(s)	144
PsiI	TTATAA	2 cut(s)	404, 1158
PstI	CTGCAG	1 cut(s)	29
PsyI	GACNNNGTC	1 cut(s)	548
RsaI	GTAC	4 cut(s)	151, 198, 530, 1167
RsaNI	GTAC	4 cut(s)	150, 197, 529, 1166
RseI	CAYNNNNRTG	3 cut(s)	69, 770, 879
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	144, 330, 657, 852
SatI	GCNGC	2 cut(s)	25, 37
Sau3AI	GATC	2 cut(s)	275, 418
ScaI	AGTACT	2 cut(s)	151, 1167
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	3 cut(s)	106, 461, 874
SfcI	CTRYAG	2 cut(s)	25, 688
SmiMI	CAYNNNNRTG	3 cut(s)	69, 770, 879
SmlI	CTYRAG	1 cut(s)	975
SmoI	CTYRAG	1 cut(s)	975
SphI	GCATGC	1 cut(s)	1256
Sse9I	AATT	6 cut(s)	341, 445, 598, 841, 1145, 1223
SseBI	AGGCCT	1 cut(s)	694
SsiI	CCGC	1 cut(s)	466
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	2 cut(s)	372, 639
StuI	AGGCCT	1 cut(s)	694
StyI	CCWWGG	1 cut(s)	961
TaaI	ACNGT	4 cut(s)	393, 462, 689, 1165
TaqI	TCGA	1 cut(s)	274
TasI	AATT	6 cut(s)	341, 445, 598, 841, 1145, 1223
TatI	WGTACW	2 cut(s)	149, 1165
TfiI	GAWTC	3 cut(s)	4, 136, 308
Tru1I	TTAA	4 cut(s)	144, 330, 657, 852
Tru9I	TTAA	4 cut(s)	144, 330, 657, 852
TscAI	CASTG	2 cut(s)	220, 1107
TseI	GCWGC	2 cut(s)	24, 36
TspRI	CASTG	2 cut(s)	220, 1107
Tth111I	GACNNNGTC	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	907
VspI	ATTAAT	1 cut(s)	144
XapI	RAATTY	3 cut(s)	841, 1145, 1223
XceI	RCATGY	2 cut(s)	769, 1256
XspI	CTAG	2 cut(s)	372, 639
ZrmI	AGTACT	2 cut(s)	151, 1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.