AT2G28315

Triose-phosphate Transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013328
Physical Location & Seq
Forward (+)
12088667 .. 12090765
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28315.2

Sequence Viewer

Length: 1029 bp
ATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAGCATTGTTTCTATCAGTTGCATCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGACCAATCTTGGTTTCCCTTTTGCAACAACACTTACTAGTTGGCATTTGATGGTAACATATTGCACACTTCATGTGGCATATAAACTAAACTTCTTTGAGAATAAACCAATAGACATGAGAACTGTTGTTCTCTTTGGCCTCCTCAATGGCATTTCCATTGGTCTCCTCAATCTCAGCCTCGGCTTTAATTCCATCGGCTTCTATCAAATGACCAAACTTGCTATCATACCATTCACTGTTCTTTTAGAAACCCTCTTCCTCAACAAGAAGTTCAGCCAGAAGATAAAATTCTCATTGTTTTTGCTGCTAGTTGGGGTTGGTATAGCATCAATCACAGATCTTCAGCTCAATTTTGTTGGCTCTGTTCTATCTCTCCTTGCCATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACTATCCAGAAGAGACTGAACGTGACATCAACACAACTCCTATACCAATCAGCCCCGTTCCAAGCTGCTATACTCTTCGTCTCGGGTCCTTTTGTCGACAAATACCTCACTAGCCTCAATGTTTTCTCCTTCCATTACTCTCCCATCGTCGTGGGGTTCATAACGTTGTCGTGTTTGATAGCGGTTTCGGTTAACTTCAGTACGTTTTTAGTGATTGGAAAGACATCTCCGGTGACATACCAAGTCTTGGGACATCTCAAAACGTGTTTGGTGCTCGCATTTGGTTACACTCTCCTTCACGATCCCTTCACTCCTCGTAATATCGCAGGAATACTCATCGCTGTCCTCGGGATGCTTCTCTACTCCTACTTCTGCTCAGTTGCTTCTAAATCCAAACAAGCCTCCTCCGATTCCACTTTTCTTGGGAAAGATAGAGATACGACGCCGCTTTTGGGACAAGAAAATGAGAACCATCATGAAGCCAAGAAATTAGACAAGCATTCTCCAGTATGA

Protein Analysis

342

Amino Acids

37.44

Weight (kDa)

9.23

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 21 - 294 6e-18 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28315 AT2G28315
fragaria_vesca FvH4_3g31910 FvH4_3g31910 FvH4_3g31910
malus_domestica MD03G1120000.v1.1 MD11G1138100.v1.1
prunus_persica Prupe.6G103500_v2.0.a1
pyrus_communis pycom11g11410
rosa_chinensis RchiOBHm_Chr5g0058681
rosa_laevigata RLG00000035241
rosa_roxburghii Rroxscaffold_1G00021730
rosa_rugosa Rorug05G0317400
rosa_samantha Rh5AG383100 Rh5BG395000 Rh5CG418800 Rh5DG410300
rosa_wichuraiana Rw5G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 763
AccI GTMKAC 1 cut(s) 612
AciI CCGC 2 cut(s) 698, 962
AclI AACGTT 1 cut(s) 680
AclWI GGATC 1 cut(s) 812
AcoI YGGCCR 1 cut(s) 499
AcsI RAATTY 2 cut(s) 386, 504
AcuI CTGAAG 2 cut(s) 425, 697
AcyI GRCGYC 1 cut(s) 959
AfaI GTAC 1 cut(s) 718
AfiI CCNNNNNNNGG 2 cut(s) 763, 968
AflIII ACRYGT 1 cut(s) 779
AhlI ACTAGT 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 3 cut(s) 92, 445, 581
AluI AGCT 3 cut(s) 92, 445, 581
Alw21I GWGCWC 1 cut(s) 792
Alw26I GTCTC 4 cut(s) 73, 266, 523, 601
AlwI GGATC 1 cut(s) 812
Ama87I CYCGRG 2 cut(s) 598, 863
AoxI GGCC 2 cut(s) 235, 499
ApeKI GCWGC 2 cut(s) 403, 581
ApoI RAATTY 2 cut(s) 386, 504
ArsI GACNNNNNNTTYG 2 cut(s) 949, 981
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 1 cut(s) 760
AvaI CYCGRG 2 cut(s) 598, 863
AvaII GGWCC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 792
BbvI GCAGC 2 cut(s) 390, 568
BccI CCATC 4 cut(s) 142, 299, 668, 996
BcoDI GTCTC 4 cut(s) 73, 266, 523, 601
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 3 cut(s) 135, 407, 627
BglII AGATCT 1 cut(s) 436
BisI GCNGC 3 cut(s) 404, 582, 962
BlsI GCNGC 3 cut(s) 405, 583, 963
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 2 cut(s) 598, 863
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 603
BmsI GCATC 3 cut(s) 68, 434, 858
BpmI CTGGAG 1 cut(s) 1005
BsaHI GRCGYC 1 cut(s) 959
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 277, 862
BsaWI WCCGGW 1 cut(s) 745
Bsc4I CCNNNNNNNGG 2 cut(s) 763, 968
Bse1I ACTGG 1 cut(s) 1022
Bse3DI GCAATG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 277, 862
BseGI GGATG 1 cut(s) 873
BseLI CCNNNNNNNGG 2 cut(s) 763, 968
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 2 cut(s) 286, 906
BseNI ACTGG 1 cut(s) 1022
BseRI GAGGAG 4 cut(s) 230, 254, 819, 910
BseXI GCAGC 2 cut(s) 390, 568
BshFI GGCC 2 cut(s) 237, 501
BsiHKAI GWGCWC 1 cut(s) 792
BsiHKCI CYCGRG 2 cut(s) 598, 863
BsiSI CCGG 1 cut(s) 746
BslFI GGGAC 2 cut(s) 780, 984
BslI CCNNNNNNNGG 2 cut(s) 763, 968
BsmAI GTCTC 4 cut(s) 73, 266, 523, 601
BsmBI CGTCTC 1 cut(s) 601
BsmFI GGGAC 2 cut(s) 780, 984
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 2 cut(s) 237, 501
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 2 cut(s) 598, 863
Bsp1286I GDGCHC 1 cut(s) 792
Bsp143I GATC 2 cut(s) 436, 817
BspACI CCGC 2 cut(s) 698, 962
BspANI GGCC 2 cut(s) 237, 501
BspCNI CTCAG 2 cut(s) 285, 905
BspHI TCATGA 1 cut(s) 991
BspLI GGNNCC 1 cut(s) 603
BspPI GGATC 1 cut(s) 812
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 1 cut(s) 1022
BssECI CCNNGG 2 cut(s) 277, 862
BssMI GATC 2 cut(s) 436, 817
BssNI GRCGYC 1 cut(s) 959
Bst4CI ACNGT 2 cut(s) 223, 337
Bst6I CTCTTC 4 cut(s) 8, 359, 521, 596
BstACI GRCGYC 1 cut(s) 959
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 2 cut(s) 272, 892
BstF5I GGATG 1 cut(s) 873
BstKTI GATC 2 cut(s) 439, 820
BstMAI GTCTC 4 cut(s) 73, 266, 523, 601
BstMBI GATC 2 cut(s) 436, 817
BstV1I GCAGC 2 cut(s) 390, 568
BstX2I RGATCY 1 cut(s) 436
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 1 cut(s) 436
BsuRI GGCC 2 cut(s) 237, 501
BtgZI GCGATG 1 cut(s) 838
BtsCI GGATG 1 cut(s) 873
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 792
CciI TCATGA 1 cut(s) 991
Cfr13I GGNCC 1 cut(s) 602
CseI GACGC 2 cut(s) 484, 967
Csp6I GTAC 1 cut(s) 717
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviAII CATG 3 cut(s) 170, 214, 992
CviQI GTAC 1 cut(s) 717
DdeI CTNAG 2 cut(s) 272, 892
DpnI GATC 2 cut(s) 438, 819
DpnII GATC 2 cut(s) 436, 817
EaeI YGGCCR 1 cut(s) 499
Eam1104I CTCTTC 4 cut(s) 8, 359, 521, 596
EarI CTCTTC 4 cut(s) 8, 359, 521, 596
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 602
Eco57I CTGAAG 2 cut(s) 425, 697
Eco88I CYCGRG 2 cut(s) 598, 863
EcoO109I RGGNCCY 1 cut(s) 602
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 3 cut(s) 173, 217, 995
FaqI GGGAC 2 cut(s) 780, 984
FatI CATG 3 cut(s) 169, 213, 991
FblI GTMKAC 1 cut(s) 612
Fnu4HI GCNGC 3 cut(s) 404, 582, 962
FokI GGATG 1 cut(s) 880
Fsp4HI GCNGC 3 cut(s) 404, 582, 962
FspBI CTAG 3 cut(s) 135, 407, 627
GluI GCNGC 3 cut(s) 404, 582, 962
GsuI CTGGAG 1 cut(s) 1005
HaeIII GGCC 2 cut(s) 237, 501
HapII CCGG 1 cut(s) 746
HgaI GACGC 2 cut(s) 484, 967
Hin1I GRCGYC 1 cut(s) 959
Hin1II CATG 3 cut(s) 173, 217, 995
HincII GTYRAC 2 cut(s) 613, 709
HindII GTYRAC 2 cut(s) 613, 709
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 1 cut(s) 926
HpaI GTTAAC 1 cut(s) 709
HpaII CCGG 1 cut(s) 746
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 2 cut(s) 613, 709
Hpy188I TCNGA 1 cut(s) 925
Hpy188III TCNNGA 4 cut(s) 523, 815, 865, 992
Hpy8I GTNNAC 2 cut(s) 613, 709
Hpy99I CGWCG 3 cut(s) 500, 668, 961
HpyAV CCTTC 3 cut(s) 655, 821, 832
HpyCH4III ACNGT 2 cut(s) 223, 337
HpyCH4IV ACGT 4 cut(s) 537, 680, 719, 779
HpyCH4V TGCA 5 cut(s) 22, 59, 84, 122, 162
HpyF3I CTNAG 2 cut(s) 272, 892
HpySE526I ACGT 4 cut(s) 537, 680, 719, 779
Hsp92I GRCGYC 1 cut(s) 959
Hsp92II CATG 3 cut(s) 173, 217, 995
KspAI GTTAAC 1 cut(s) 709
Kzo9I GATC 2 cut(s) 436, 817
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 389, 536, 759, 828
Lsp1109I GCAGC 2 cut(s) 390, 568
LweI GCATC 3 cut(s) 68, 434, 858
MaeI CTAG 3 cut(s) 135, 407, 627
MaeII ACGT 4 cut(s) 537, 680, 719, 779
MaeIII GTNAC 4 cut(s) 151, 538, 748, 800
MalI GATC 2 cut(s) 438, 819
MboI GATC 2 cut(s) 436, 817
MboII GAAGA 7 cut(s) 25, 54, 346, 391, 431, 538, 583
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 792
MluCI AATT 5 cut(s) 286, 386, 448, 504, 1004
MseI TTAA 2 cut(s) 285, 708
MslI CAYNNNNRTG 1 cut(s) 665
MspI CCGG 1 cut(s) 746
Mva1269I GAATGC 1 cut(s) 1015
NdeII GATC 2 cut(s) 436, 817
NlaIII CATG 3 cut(s) 173, 217, 995
NlaIV GGNNCC 1 cut(s) 603
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 538, 748
PagI TCATGA 1 cut(s) 991
PctI GAATGC 1 cut(s) 1015
PfeI GAWTC 1 cut(s) 926
PflMI CCANNNNNTGG 1 cut(s) 763
PkrI GCNGC 3 cut(s) 405, 583, 963
PpuMI RGGWCCY 1 cut(s) 602
Psp1406I AACGTT 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 602
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 1 cut(s) 602
PspPPI RGGWCCY 1 cut(s) 602
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 1 cut(s) 718
RsaNI GTAC 1 cut(s) 717
RseI CAYNNNNRTG 1 cut(s) 665
SalI GTCGAC 1 cut(s) 611
SaqAI TTAA 2 cut(s) 285, 708
SatI GCNGC 3 cut(s) 404, 582, 962
Sau3AI GATC 2 cut(s) 436, 817
Sau96I GGNCC 1 cut(s) 602
SduI GDGCHC 1 cut(s) 792
SetI ASST 8 cut(s) 94, 447, 540, 583, 624, 683, 722, 782
SfaNI GCATC 3 cut(s) 68, 434, 858
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 665
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 5 cut(s) 286, 386, 448, 504, 1004
SsiI CCGC 2 cut(s) 698, 962
SspMI CTAG 3 cut(s) 135, 407, 627
TaaI ACNGT 2 cut(s) 223, 337
TaiI ACGT 4 cut(s) 540, 683, 722, 782
TaqI TCGA 1 cut(s) 612
TasI AATT 5 cut(s) 286, 386, 448, 504, 1004
TauI GCSGC 1 cut(s) 964
TfiI GAWTC 1 cut(s) 926
Tru1I TTAA 2 cut(s) 285, 708
Tru9I TTAA 2 cut(s) 285, 708
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 538, 748
TseI GCWGC 2 cut(s) 403, 581
Tsp45I GTSAC 2 cut(s) 538, 748
TspDTI ATGAA 4 cut(s) 26, 158, 664, 1008
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 763
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 2 cut(s) 386, 504
XmiI GTMKAC 1 cut(s) 612
XspI CTAG 3 cut(s) 135, 407, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.