Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013328

Physical Location & Seq

Genomic Coordinates Forward (+)

26961131 .. 26965887

Gene Structure 4757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31910.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGAGAAATGACCGGCTTCCAATTGGGCGTTATTGGTGCACTGTTTCTTTCAGTGGCATCATCTGTCTCCATTGTTATATGCAACAAAGCCTTGATGAGCAATCTTGGCTTCCCGTTTGCGACTACACTTACCAGTTGGCATCTCATGGTAACTTTCTGCACACTTCATGTGGCAAATCGTCTCAATTTCTTCGAGAGCAAATCAATTGACATGAAGACTGTCATGCTCTTTGGCATTCTAAATGGTGTTTCAATTGGACTGCTCAATTTGAGTCTGGGATTCAATTCTGTTGGGTTCTACCAGATGACCAAGCTTGCAATCATACCATTTACTGTGTTAGTAGAGACTATTTTCCTTAAAAAGCAATTCAGCCAGCAGATAAAGTTTTCTCTCTTCCTATTACTAGTCGGAGTTGGCATTGCCTCTGTGACAGACCTCCAGCTCAATTTTGTTGGAACAGTTCTCTCGCTTCTAGCCATCATCACAACCTGTGTTGGCCAAATTCTAACAAACACAATACAGAAGAGGCTCAATGTTTCTTCTACTCAACTGCTCTACCACTCGGCACCTTTTCAAGCAGCTATCCTTTTCGTCTCCGGACCTGTGGTCGATCAGTTCCTCACCAAGCAAAGTGTCTTTTCCCACAAATACTCCCCCATAGTCCTGGTATTCATCATACTCTCTTGCCTAATAGCTGTGTCTGTGAACTTTAGTACCTTTTTGGTGATTGGCAAAACATCACCAGTGACATATCAAGTGCTAGGGCACCTCAAGACATGCCTTGTTCTAGGGTTCGGCTATACATTACTACATGACCCTTTCACTGAGAGGAACATAATCGGAATTCTGGTGGCCATTTTCGGGATGGGACTGTATTCATATTTCTGTGCACAGGAGAACAAAAAGAAACAAGCAGCTGACGTTAAGGATGGTGCTCCACTTTTGAGTCAGGATAAAGATAGCCATGAGGATATATATAGGTATGCATACAACAAGTGGTTGAGACATCAATTAAATCGCAAACTAAATAAGTACGTAGGACAAGATTGCATGTCTACCGAGAGAGCAACACCTTGGCACACAAGGCAGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

367

Amino Acids

40.63

Weight (kDa)

9.31

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 294	1.3e-19	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28315 AT2G28315
fragaria_vesca	FvH4_3g31910 FvH4_3g31910 FvH4_3g31910
malus_domestica	MD03G1120000.v1.1 MD11G1138100.v1.1
prunus_persica	Prupe.6G103500_v2.0.a1
pyrus_communis	pycom11g11410
rosa_chinensis	RchiOBHm_Chr5g0058681
rosa_laevigata	RLG00000035241
rosa_roxburghii	Rroxscaffold_1G00021730
rosa_rugosa	Rorug05G0317400
rosa_samantha	Rh5AG383100 Rh5BG395000 Rh5CG418800 Rh5DG410300
rosa_wichuraiana	Rw5G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	568, 768
AccI	GTMKAC	1 cut(s)	1058
AccIII	TCCGGA	1 cut(s)	599
AcoI	YGGCCR	2 cut(s)	499, 855
AcsI	RAATTY	2 cut(s)	504, 846
AfaI	GTAC	2 cut(s)	718, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	864
AgsI	TTSAA	3 cut(s)	255, 286, 578
AhdI	GACNNNNNGTC	1 cut(s)	608
AhlI	ACTAGT	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	5 cut(s)	316, 445, 584, 698, 920
AluI	AGCT	5 cut(s)	316, 445, 584, 698, 920
Alw21I	GWGCWC	3 cut(s)	43, 895, 940
Alw26I	GTCTC	5 cut(s)	73, 188, 341, 601, 1000
Alw44I	GTGCAC	2 cut(s)	39, 891
Aor13HI	TCCGGA	1 cut(s)	599
AoxI	GGCC	2 cut(s)	499, 855
ApaLI	GTGCAC	2 cut(s)	39, 891
ApeKI	GCWGC	3 cut(s)	581, 917, 1090
ApoI	RAATTY	2 cut(s)	504, 846
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	3 cut(s)	616, 735, 739
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	3 cut(s)	43, 771, 895
BaeI	ACNNNNGTAYC	2 cut(s)	700, 733
BalI	TGGCCA	2 cut(s)	501, 857
BanI	GGYRCC	2 cut(s)	568, 768
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	3 cut(s)	43, 895, 940
BbvI	GCAGC	2 cut(s)	593, 929
BccI	CCATC	3 cut(s)	488, 862, 926
BciT130I	CCWGG	1 cut(s)	668
BcoDI	GTCTC	5 cut(s)	73, 188, 341, 601, 1000
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	4 cut(s)	407, 476, 764, 791
BisI	GCNGC	3 cut(s)	582, 918, 1091
BlsI	GCNGC	3 cut(s)	583, 919, 1092
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	1 cut(s)	602
BmeRI	GACNNNNNGTC	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	570, 770
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	2 cut(s)	68, 151
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	758
BsaAI	YACGTR	1 cut(s)	1039
BsaJI	CCNNGG	1 cut(s)	1076
BsaWI	WCCGGW	1 cut(s)	599
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	864
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	135, 746
Bse3DI	GCAATG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	599
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	1 cut(s)	1076
BseGI	GGATG	2 cut(s)	873, 937
BseLI	CCNNNNNNNGG	1 cut(s)	864
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	2 cut(s)	135, 746
BseSI	GKGCMC	3 cut(s)	43, 771, 895
BseXI	GCAGC	2 cut(s)	593, 929
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	501, 857
BshNI	GGYRCC	2 cut(s)	568, 768
BsiHKAI	GWGCWC	3 cut(s)	43, 895, 940
BsiSI	CCGG	2 cut(s)	15, 600
BslFI	GGGAC	1 cut(s)	885
BslI	CCNNNNNNNGG	1 cut(s)	864
BsmAI	GTCTC	5 cut(s)	73, 188, 341, 601, 1000
BsmBI	CGTCTC	2 cut(s)	188, 601
BsmFI	GGGAC	1 cut(s)	885
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	501, 857
Bsp1286I	GDGCHC	4 cut(s)	43, 771, 895, 940
Bsp13I	TCCGGA	1 cut(s)	599
Bsp143I	GATC	1 cut(s)	613
BspANI	GGCC	2 cut(s)	501, 857
BspCNI	CTCAG	1 cut(s)	820
BspEI	TCCGGA	1 cut(s)	599
BspLI	GGNNCC	2 cut(s)	570, 770
BspT107I	GGYRCC	2 cut(s)	568, 768
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	135, 746
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	1076
BssMI	GATC	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	1076
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	5 cut(s)	45, 223, 337, 463, 876
Bst6I	CTCTTC	2 cut(s)	401, 521
BstBAI	YACGTR	1 cut(s)	1039
BstC8I	GCNNGC	2 cut(s)	318, 377
BstDEI	CTNAG	1 cut(s)	828
BstF5I	GGATG	2 cut(s)	873, 937
BstKTI	GATC	1 cut(s)	616
BstMAI	GTCTC	5 cut(s)	73, 188, 341, 601, 1000
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 1087
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	2 cut(s)	783, 1057
BstSCI	CCNGG	1 cut(s)	666
BstSLI	GKGCMC	3 cut(s)	43, 771, 895
BstSNI	TACGTA	1 cut(s)	1039
BstV1I	GCAGC	2 cut(s)	593, 929
BstV2I	GAAGAC	1 cut(s)	224
BstXI	CCANNNNNNTGG	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	501, 857
BtsCI	GGATG	2 cut(s)	873, 937
BtsIMutI	CAGTG	4 cut(s)	41, 60, 753, 825
Cac8I	GCNNGC	2 cut(s)	318, 377
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	2 cut(s)	717, 1036
CviAII	CATG	8 cut(s)	148, 170, 214, 226, 780, 815, 968, 1054
CviQI	GTAC	2 cut(s)	717, 1036
DdeI	CTNAG	1 cut(s)	828
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
DriI	GACNNNNNGTC	1 cut(s)	608
EaeI	YGGCCR	2 cut(s)	499, 855
Eam1104I	CTCTTC	2 cut(s)	401, 521
Eam1105I	GACNNNNNGTC	1 cut(s)	608
EarI	CTCTTC	2 cut(s)	401, 521
Eco105I	TACGTA	1 cut(s)	1039
Eco130I	CCWWGG	1 cut(s)	1076
Eco47I	GGWCC	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	1076
EcoT22I	ATGCAT	1 cut(s)	991
ErhI	CCWWGG	1 cut(s)	1076
Esp3I	CGTCTC	2 cut(s)	188, 601
FaeI	CATG	8 cut(s)	151, 173, 217, 229, 783, 818, 971, 1057
FaqI	GGGAC	1 cut(s)	885
FatI	CATG	8 cut(s)	147, 169, 213, 225, 779, 814, 967, 1053
FblI	GTMKAC	1 cut(s)	1058
Fnu4HI	GCNGC	3 cut(s)	582, 918, 1091
FokI	GGATG	2 cut(s)	880, 944
Fsp4HI	GCNGC	3 cut(s)	582, 918, 1091
FspBI	CTAG	4 cut(s)	407, 476, 764, 791
GluI	GCNGC	3 cut(s)	582, 918, 1091
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	501, 857
HapII	CCGG	2 cut(s)	15, 600
Hin1II	CATG	8 cut(s)	151, 173, 217, 229, 783, 818, 971, 1057
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	3 cut(s)	274, 282, 949
HpaII	CCGG	2 cut(s)	15, 600
HphI	GGTGA	3 cut(s)	616, 735, 739
Hpy166II	GTNNAC	4 cut(s)	41, 709, 893, 1059
Hpy188I	TCNGA	2 cut(s)	413, 845
Hpy188III	TCNNGA	5 cut(s)	196, 600, 775, 865, 953
Hpy8I	GTNNAC	4 cut(s)	41, 709, 893, 1059
HpyCH4III	ACNGT	5 cut(s)	45, 223, 337, 463, 876
HpyCH4IV	ACGT	2 cut(s)	924, 1038
HpyCH4V	TGCA	7 cut(s)	41, 84, 162, 320, 893, 989, 1053
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 1087
HpyF3I	CTNAG	1 cut(s)	828
HpySE526I	ACGT	2 cut(s)	924, 1038
Hsp92II	CATG	8 cut(s)	151, 173, 217, 229, 783, 818, 971, 1057
Kpn2I	TCCGGA	1 cut(s)	599
Kzo9I	GATC	1 cut(s)	613
LmnI	GCTCC	1 cut(s)	943
Lsp1109I	GCAGC	2 cut(s)	593, 929
LweI	GCATC	2 cut(s)	68, 151
MaeI	CTAG	4 cut(s)	407, 476, 764, 791
MaeII	ACGT	2 cut(s)	924, 1038
MaeIII	GTNAC	3 cut(s)	151, 430, 748
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	5 cut(s)	184, 229, 388, 534, 538
MfeI	CAATTG	3 cut(s)	23, 207, 255
MhlI	GDGCHC	4 cut(s)	43, 771, 895, 940
MlsI	TGGCCA	2 cut(s)	501, 857
MluNI	TGGCCA	2 cut(s)	501, 857
MlyI	GAGTC	2 cut(s)	283, 958
MmeI	TCCRAC	2 cut(s)	391, 436
MnlI	CCTC	7 cut(s)	436, 449, 522, 632, 782, 825, 964
Mox20I	TGGCCA	2 cut(s)	501, 857
Mph1103I	ATGCAT	1 cut(s)	991
MroI	TCCGGA	1 cut(s)	599
MscI	TGGCCA	2 cut(s)	501, 857
MseI	TTAA	3 cut(s)	360, 927, 1016
Msp20I	TGGCCA	2 cut(s)	501, 857
MspA1I	CMGCKG	1 cut(s)	920
MspI	CCGG	2 cut(s)	15, 600
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	3 cut(s)	23, 207, 255
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	2 cut(s)	108, 1087
NdeII	GATC	1 cut(s)	613
NlaIII	CATG	8 cut(s)	151, 173, 217, 229, 783, 818, 971, 1057
NlaIV	GGNNCC	2 cut(s)	570, 770
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	2 cut(s)	430, 748
NsiI	ATGCAT	1 cut(s)	991
NspI	RCATGY	2 cut(s)	783, 1057
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	583, 919, 1092
PleI	GAGTC	2 cut(s)	282, 957
PpsI	GAGTC	2 cut(s)	282, 957
Ppu21I	YACGTR	1 cut(s)	1039
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	2 cut(s)	570, 770
PspPI	GGNCC	1 cut(s)	602
PvuII	CAGCTG	1 cut(s)	920
RsaI	GTAC	2 cut(s)	718, 1037
RsaNI	GTAC	2 cut(s)	717, 1036
SaqAI	TTAA	3 cut(s)	360, 927, 1016
SatI	GCNGC	3 cut(s)	582, 918, 1091
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	2 cut(s)	283, 958
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	4 cut(s)	43, 771, 895, 940
SfaNI	GCATC	2 cut(s)	68, 151
SinI	GGWCC	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SnaBI	TACGTA	1 cut(s)	1039
SpeI	ACTAGT	1 cut(s)	406
SspMI	CTAG	4 cut(s)	407, 476, 764, 791
StyD4I	CCNGG	1 cut(s)	666
StyI	CCWWGG	1 cut(s)	1076
TaaI	ACNGT	5 cut(s)	45, 223, 337, 463, 876
TaiI	ACGT	2 cut(s)	927, 1041
TaqI	TCGA	2 cut(s)	195, 612
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	3 cut(s)	360, 927, 1016
Tru9I	TTAA	3 cut(s)	360, 927, 1016
TscAI	CASTG	4 cut(s)	48, 60, 753, 832
TseFI	GTSAC	2 cut(s)	430, 748
TseI	GCWGC	3 cut(s)	581, 917, 1090
Tsp45I	GTSAC	2 cut(s)	430, 748
TspDTI	ATGAA	4 cut(s)	158, 230, 664, 870
TspRI	CASTG	4 cut(s)	48, 60, 753, 832
VneI	GTGCAC	2 cut(s)	39, 891
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	2 cut(s)	504, 846
XceI	RCATGY	2 cut(s)	783, 1057
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
XmiI	GTMKAC	1 cut(s)	1058
XspI	CTAG	4 cut(s)	407, 476, 764, 791
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.