Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013328

Physical Location & Seq

Genomic Coordinates Reverse (-)

7239182 .. 7242308

Gene Structure 3127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G103500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGAGAAATGACTGGCTTCCAATTGGGAGTTATTGGTGCACTGTTTCTTTCAGTTGCATCATCTGTCTCCATTGTTATATGCAACAAAGCTTTGATGAGCAATCTTGGCTTCCCGTTTGCAACAACACTTACCAGTTGGCATCTGATGGTAACTTTTTGCACTCTTCATGCGGCACAACGTCTCAATTTTTTCGAGAGTAAGTCGATTGACATGAAGACTGTCATGCTCTTTGGCATTCTAAATGGTATTTCAATTGGTTTACTCAACTTGAGCCTGGGATTCAATTCCATTGGGTTCTACCAGATGACCAAGCTTGCAATTATACCATTCACTGTGTTATTGGAAACTCTTTTCCTTAAAAAGCAATTTAGCCAGAAGATAAAGTTTTCTCTCTTCCTATTACTTGTTGGAGTTGGGATTGCTTCTGTGACAGACCTCCAGCTCAATTTTGTTGGAACCATTCTCTCTCTTTTAGCCATCATAACAACCTGTGTTGGCCAAATTCTAACAAACACAATTCAGAAAAGGCTCAATGTATCTTCTACGCAGCTACTCTACCAGTCAGCCCCTTTTCAAGCAGCTATTCTTTTTGTATCAGGCCCTTTGGTGGACCAGTACCTCACCAAGCAAAATGTCTTTGCCCACAAATACTCTTCCATAGTCTTGGTATTCATCATCCTTTCATGCCTCATAGCTGTGTCTGTGAACTTCAGCACCTTTCTAGTAATTGGCAAGACATCGCCTGTCACATATCAAGTTCTAGGCCACCTCAAGACATGCCTTGTTCTGGGCTTTGGCTACACATTACTTCATGACCCTTTCACTTACAGGAACATAATTGGAATTCTGGTTGCCATTTTTGGGATGGGATTGTATTCATATTTCTGCTTACAGGAGAACAAAAAGAAGCAAGCAGGTGACCTCTCTCTGGGCTCCCAAATTAAAGATAAGGATGGCATTCCACTTTTGAGTATAGATAAAGATGGTCATGAGGTTAAGAAATCAACCAAGAACTCTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

343

Amino Acids

37.45

Weight (kDa)

9.36

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28315 AT2G28315
fragaria_vesca	FvH4_3g31910 FvH4_3g31910 FvH4_3g31910
malus_domestica	MD03G1120000.v1.1 MD11G1138100.v1.1
prunus_persica	Prupe.6G103500_v2.0.a1
pyrus_communis	pycom11g11410
rosa_chinensis	RchiOBHm_Chr5g0058681
rosa_laevigata	RLG00000035241
rosa_roxburghii	Rroxscaffold_1G00021730
rosa_rugosa	Rorug05G0317400
rosa_samantha	Rh5AG383100 Rh5BG395000 Rh5CG418800 Rh5DG410300
rosa_wichuraiana	Rw5G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	908
Acc36I	ACCTGC	1 cut(s)	908
AciI	CCGC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	2 cut(s)	504, 846
AcuI	CTGAAG	1 cut(s)	697
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	4 cut(s)	610, 790, 864, 931
AgsI	TTSAA	3 cut(s)	255, 286, 578
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	6 cut(s)	92, 316, 445, 553, 584, 698
AluI	AGCT	6 cut(s)	92, 316, 445, 553, 584, 698
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	2 cut(s)	73, 188
Alw44I	GTGCAC	1 cut(s)	39
AoxI	GGCC	3 cut(s)	499, 601, 766
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	550, 581
ApoI	RAATTY	2 cut(s)	504, 846
AspS9I	GGNCC	2 cut(s)	602, 613
AsuHPI	GGTGA	2 cut(s)	616, 932
AvaII	GGWCC	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	938
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	562, 593
BccI	CCATC	5 cut(s)	142, 488, 862, 950, 980
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	73, 188
BfaI	CTAG	2 cut(s)	725, 764
BfuAI	ACCTGC	1 cut(s)	908
BisI	GCNGC	3 cut(s)	174, 551, 582
BlsI	GCNGC	3 cut(s)	175, 552, 583
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	613
BmgT120I	GGNCC	2 cut(s)	602, 613
BmiI	GGNNCC	2 cut(s)	460, 937
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	68, 151
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	2 cut(s)	292, 758
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	4 cut(s)	610, 790, 864, 931
Bse1I	ACTGG	4 cut(s)	19, 135, 562, 616
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	3 cut(s)	678, 873, 961
BseLI	CCNNNNNNNGG	4 cut(s)	610, 790, 864, 931
BseNI	ACTGG	4 cut(s)	19, 135, 562, 616
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	562, 593
BshFI	GGCC	3 cut(s)	501, 603, 768
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	4 cut(s)	610, 790, 864, 931
BsmAI	GTCTC	2 cut(s)	73, 188
BsmBI	CGTCTC	1 cut(s)	188
BsmI	GAATGC	2 cut(s)	237, 960
BsnI	GGCC	3 cut(s)	501, 603, 768
Bsp1286I	GDGCHC	2 cut(s)	43, 938
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	3 cut(s)	501, 603, 768
BspHI	TCATGA	2 cut(s)	814, 991
BspLI	GGNNCC	2 cut(s)	460, 937
BspMI	ACCTGC	1 cut(s)	908
BsrI	ACTGG	4 cut(s)	19, 135, 562, 616
BssECI	CCNNGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	45, 223, 337
Bst6I	CTCTTC	3 cut(s)	171, 401, 661
BstC8I	GCNNGC	2 cut(s)	318, 915
BstEII	GGTNACC	1 cut(s)	920
BstF5I	GGATG	3 cut(s)	678, 873, 961
BstMAI	GTCTC	2 cut(s)	73, 188
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	783
BstPI	GGTNACC	1 cut(s)	920
BstSCI	CCNGG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	562, 593
BstV2I	GAAGAC	1 cut(s)	224
BstXI	CCANNNNNNTGG	1 cut(s)	667
BsuRI	GGCC	3 cut(s)	501, 603, 768
BtgZI	GCGATG	1 cut(s)	726
BtsCI	GGATG	3 cut(s)	678, 873, 961
BtsIMutI	CAGTG	2 cut(s)	41, 333
BveI	ACCTGC	1 cut(s)	908
Cac8I	GCNNGC	2 cut(s)	318, 915
CciI	TCATGA	2 cut(s)	814, 991
Cfr13I	GGNCC	2 cut(s)	602, 613
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	7 cut(s)	170, 214, 226, 687, 780, 815, 992
CviQI	GTAC	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	3 cut(s)	171, 401, 661
EarI	CTCTTC	3 cut(s)	171, 401, 661
Eco24I	GRGCYC	1 cut(s)	938
Eco47I	GGWCC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	697
Eco91I	GGTNACC	1 cut(s)	920
EcoO109I	RGGNCCY	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	938
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	7 cut(s)	173, 217, 229, 690, 783, 818, 995
FatI	CATG	7 cut(s)	169, 213, 225, 686, 779, 814, 991
Fnu4HI	GCNGC	3 cut(s)	174, 551, 582
FokI	GGATG	3 cut(s)	665, 880, 968
FriOI	GRGCYC	1 cut(s)	938
Fsp4HI	GCNGC	3 cut(s)	174, 551, 582
FspBI	CTAG	2 cut(s)	725, 764
GluI	GCNGC	3 cut(s)	174, 551, 582
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	3 cut(s)	501, 603, 768
Hin1II	CATG	7 cut(s)	173, 217, 229, 690, 783, 818, 995
HindIII	AAGCTT	2 cut(s)	90, 314
HinfI	GANTC	1 cut(s)	282
HphI	GGTGA	2 cut(s)	616, 932
Hpy166II	GTNNAC	4 cut(s)	41, 263, 613, 709
Hpy188I	TCNGA	2 cut(s)	147, 525
Hpy188III	TCNNGA	4 cut(s)	196, 775, 815, 992
Hpy8I	GTNNAC	4 cut(s)	41, 263, 613, 709
HpyCH4III	ACNGT	3 cut(s)	45, 223, 337
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	6 cut(s)	41, 59, 84, 122, 162, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	7 cut(s)	173, 217, 229, 690, 783, 818, 995
LmnI	GCTCC	1 cut(s)	941
Lsp1109I	GCAGC	2 cut(s)	562, 593
LweI	GCATC	2 cut(s)	68, 151
MaeI	CTAG	2 cut(s)	725, 764
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	4 cut(s)	151, 430, 748, 920
MboII	GAAGA	6 cut(s)	158, 229, 388, 391, 534, 648
MfeI	CAATTG	2 cut(s)	23, 255
MhlI	GDGCHC	2 cut(s)	43, 938
MlsI	TGGCCA	1 cut(s)	501
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	2 cut(s)	391, 436
MnlI	CCTC	6 cut(s)	449, 632, 701, 782, 935, 988
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	3 cut(s)	360, 945, 999
MslI	CAYNNNNRTG	1 cut(s)	698
Msp20I	TGGCCA	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	2 cut(s)	23, 255
Mva1269I	GAATGC	2 cut(s)	237, 960
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	108
NlaIII	CATG	7 cut(s)	173, 217, 229, 690, 783, 818, 995
NlaIV	GGNNCC	2 cut(s)	460, 937
NmuCI	GTSAC	3 cut(s)	430, 748, 920
NspI	RCATGY	1 cut(s)	783
PagI	TCATGA	2 cut(s)	814, 991
PaqCI	CACCTGC	1 cut(s)	908
PctI	GAATGC	2 cut(s)	237, 960
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	175, 552, 583
Psp6I	CCWGG	1 cut(s)	276
PspEI	GGTNACC	1 cut(s)	920
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	460, 937
PspPI	GGNCC	2 cut(s)	602, 613
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	3 cut(s)	360, 945, 999
SatI	GCNGC	3 cut(s)	174, 551, 582
Sau96I	GGNCC	2 cut(s)	602, 613
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	43, 938
SfaNI	GCATC	2 cut(s)	68, 151
SinI	GGWCC	1 cut(s)	613
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	2 cut(s)	271, 773
SmoI	CTYRAG	2 cut(s)	271, 773
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	725, 764
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	45, 223, 337
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	195, 206
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	3 cut(s)	360, 945, 999
Tru9I	TTAA	3 cut(s)	360, 945, 999
TscAI	CASTG	2 cut(s)	48, 340
TseFI	GTSAC	3 cut(s)	430, 748, 920
TseI	GCWGC	2 cut(s)	550, 581
Tsp45I	GTSAC	3 cut(s)	430, 748, 920
TspDTI	ATGAA	6 cut(s)	158, 230, 664, 675, 803, 870
TspRI	CASTG	2 cut(s)	48, 340
VneI	GTGCAC	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	2 cut(s)	504, 846
XceI	RCATGY	1 cut(s)	783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
XspI	CTAG	2 cut(s)	725, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.