Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0013328

Physical Location & Seq

Genomic Coordinates Reverse (-)

10045422 .. 10047390

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTGGATTCCAATTGGGCGTTATTGGTGCACTGTTTCTTTCAGTGGCATCGTCTGTCTCTATTGTTATATGCAACAAAGCTTTGATGAGCAATCTCGGCTTCCCCTTTGCAACAACGCTTACCAGTTGGCATCTGATGGTAACATTTGGCACCCTTCATGCGGCACAACGTCTTAAATTTTTCGAGAGTAAGTCAATTGACATGAAGACTGTCATGCTCTTTGGCATTCTTAATGGTGTTTCCATTGGATTGCTAAACTTGAGCCTCGGATTCAATTCCATTGGATTCTACCAGATGACCAAGCTTGCAATTATACCCTTTACTGTGTTATTGGAAACTCTTTTCCTTAAAAAGCAATTCAGCCAGAAGATCAAGTTTTCTCTCTTCTTATTAGTTGTTGGAGTTGGAATTGCCTCAGTGACAGACCTCCAGCTCAATTTTGTTGGAACGATTCTCTCTCTTCTAGCCATCGTAACAACCTGTGTTGGACAAATTCTAACAAACACAATACAGAAAAGGCTCAATGTCTCCTCTACTCAGCTTCTCTACCAATCAGCCCCTTTTCAAGCAGCTATTCTTTTTGTATCAGGCCCTGTGGTGGACCAGTTCCTTACCAAGCAAAATGTTTTTGCCCATAAATACTCTTCTATAGTATTGGTATTCATCATACTTTCATGCCTGATAGCTGTGTCTGTGAACTTCAGCACCTTCTTAGTAATTGGCAAGACATCCCCAGTTACATATCAAGTGCTAGGTCATCTCAAGACATGCCTTGTTCTAGGGTTTGGCTACACATTACTCCATGACCCCTTCACTGAGAGGAATATAATTGGAATTCTGGTTGCCATTTTTGGGATGGGATTGTATTCATATTTTTGTGCCCAGGAAAGCAAGAAGAAACAAGCTGGTGGTGACCTCTCATTGGGATCTCCGACTAAAGGAAAGGATGGCACTCCACTTTTGAGCCAAGATAATGATACCCATGAGGTTAAGAAATCAACTAAGAACTCTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

341

Amino Acids

36.88

Weight (kDa)

9.52

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28315 AT2G28315
fragaria_vesca	FvH4_3g31910 FvH4_3g31910 FvH4_3g31910
malus_domestica	MD03G1120000.v1.1 MD11G1138100.v1.1
prunus_persica	Prupe.6G103500_v2.0.a1
pyrus_communis	pycom11g11410
rosa_chinensis	RchiOBHm_Chr5g0058681
rosa_laevigata	RLG00000035241
rosa_roxburghii	Rroxscaffold_1G00021730
rosa_rugosa	Rorug05G0317400
rosa_samantha	Rh5AG383100 Rh5BG395000 Rh5CG418800 Rh5DG410300
rosa_wichuraiana	Rw5G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	937
AcsI	RAATTY	3 cut(s)	179, 495, 837
AcuI	CTGAAG	1 cut(s)	688
AfiI	CCNNNNNNNGG	5 cut(s)	163, 601, 855, 925, 941
AgsI	TTSAA	2 cut(s)	277, 569
AjnI	CCWGG	1 cut(s)	885
AluBI	AGCT	7 cut(s)	83, 307, 436, 544, 575, 689, 908
AluI	AGCT	7 cut(s)	83, 307, 436, 544, 575, 689, 908
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	64, 535
Alw44I	GTGCAC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	937
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	1 cut(s)	592
ApaLI	GTGCAC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	3 cut(s)	179, 495, 837
AspS9I	GGNCC	2 cut(s)	593, 604
AsuHPI	GGTGA	1 cut(s)	926
AvaII	GGWCC	1 cut(s)	604
BaeGI	GKGCMC	2 cut(s)	34, 886
BanI	GGYRCC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	4 cut(s)	133, 479, 853, 944
BciT130I	CCWGG	1 cut(s)	887
BcoDI	GTCTC	2 cut(s)	64, 535
BfaI	CTAG	3 cut(s)	467, 755, 782
BfmI	CTRYAG	1 cut(s)	651
BisI	GCNGC	2 cut(s)	165, 573
BlsI	GCNGC	2 cut(s)	166, 574
Bme1390I	CCNGG	1 cut(s)	887
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	2 cut(s)	593, 604
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	887
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	2 cut(s)	59, 142
BmuI	ACTGGG	1 cut(s)	731
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	2 cut(s)	283, 749
BsaJI	CCNNGG	2 cut(s)	268, 885
Bsc4I	CCNNNNNNNGG	5 cut(s)	163, 601, 855, 925, 941
Bse1I	ACTGG	3 cut(s)	126, 607, 737
BseBI	CCWGG	1 cut(s)	887
BseDI	CCNNGG	2 cut(s)	268, 885
BseGI	GGATG	3 cut(s)	731, 864, 955
BseLI	CCNNNNNNNGG	5 cut(s)	163, 601, 855, 925, 941
BseMII	CTCAG	3 cut(s)	432, 554, 810
BseNI	ACTGG	3 cut(s)	126, 607, 737
BseRI	GAGGAG	1 cut(s)	523
BseSI	GKGCMC	2 cut(s)	34, 886
BseXI	GCAGC	1 cut(s)	584
BshFI	GGCC	1 cut(s)	594
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	34
BslI	CCNNNNNNNGG	5 cut(s)	163, 601, 855, 925, 941
BsmAI	GTCTC	2 cut(s)	64, 535
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	594
Bsp1286I	GDGCHC	2 cut(s)	34, 886
Bsp143I	GATC	2 cut(s)	372, 929
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	3 cut(s)	431, 553, 811
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	937
BspT107I	GGYRCC	1 cut(s)	152
BsrI	ACTGG	3 cut(s)	126, 607, 737
BssECI	CCNNGG	2 cut(s)	268, 885
BssMI	GATC	2 cut(s)	372, 929
Bst2UI	CCWGG	1 cut(s)	887
Bst4CI	ACNGT	3 cut(s)	36, 214, 328
Bst6I	CTCTTC	3 cut(s)	392, 468, 652
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	5 cut(s)	418, 540, 715, 819, 1005
BstEII	GGTNACC	1 cut(s)	914
BstF5I	GGATG	3 cut(s)	731, 864, 955
BstKTI	GATC	2 cut(s)	375, 932
BstMAI	GTCTC	2 cut(s)	64, 535
BstMBI	GATC	2 cut(s)	372, 929
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	887
BstNSI	RCATGY	1 cut(s)	774
BstPI	GGTNACC	1 cut(s)	914
BstSCI	CCNGG	1 cut(s)	885
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	2 cut(s)	34, 886
BstV1I	GCAGC	1 cut(s)	584
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
BsuRI	GGCC	1 cut(s)	594
BtsCI	GGATG	3 cut(s)	731, 864, 955
BtsIMutI	CAGTG	4 cut(s)	32, 51, 426, 816
Cac8I	GCNNGC	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	593, 604
CviAII	CATG	7 cut(s)	161, 205, 217, 678, 771, 806, 986
DdeI	CTNAG	5 cut(s)	418, 540, 715, 819, 1005
DpnI	GATC	2 cut(s)	374, 931
DpnII	GATC	2 cut(s)	372, 929
Eam1104I	CTCTTC	3 cut(s)	392, 468, 652
EarI	CTCTTC	3 cut(s)	392, 468, 652
Eco47I	GGWCC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	688
Eco91I	GGTNACC	1 cut(s)	914
EcoO109I	RGGNCCY	1 cut(s)	593
EcoO65I	GGTNACC	1 cut(s)	914
EcoRI	GAATTC	1 cut(s)	837
EcoRII	CCWGG	1 cut(s)	885
FaeI	CATG	7 cut(s)	164, 208, 220, 681, 774, 809, 989
FatI	CATG	7 cut(s)	160, 204, 216, 677, 770, 805, 985
Fnu4HI	GCNGC	2 cut(s)	165, 573
FokI	GGATG	3 cut(s)	718, 871, 962
Fsp4HI	GCNGC	2 cut(s)	165, 573
FspBI	CTAG	3 cut(s)	467, 755, 782
GluI	GCNGC	2 cut(s)	165, 573
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	594
Hin1II	CATG	7 cut(s)	164, 208, 220, 681, 774, 809, 989
HindIII	AAGCTT	2 cut(s)	81, 305
HinfI	GANTC	4 cut(s)	9, 273, 288, 454
HphI	GGTGA	1 cut(s)	926
Hpy166II	GTNNAC	3 cut(s)	32, 604, 700
Hpy188I	TCNGA	3 cut(s)	138, 272, 936
Hpy188III	TCNNGA	2 cut(s)	187, 766
Hpy8I	GTNNAC	3 cut(s)	32, 604, 700
HpyAV	CCTTC	3 cut(s)	167, 721, 823
HpyCH4III	ACNGT	3 cut(s)	36, 214, 328
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	32, 75, 113, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	5 cut(s)	418, 540, 715, 819, 1005
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	7 cut(s)	164, 208, 220, 681, 774, 809, 989
Kzo9I	GATC	2 cut(s)	372, 929
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	2 cut(s)	59, 142
MaeI	CTAG	3 cut(s)	467, 755, 782
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	5 cut(s)	142, 421, 475, 739, 914
MalI	GATC	2 cut(s)	374, 931
MboI	GATC	2 cut(s)	372, 929
MboII	GAAGA	6 cut(s)	220, 379, 382, 455, 639, 910
MfeI	CAATTG	2 cut(s)	14, 198
MflI	RGATCY	1 cut(s)	929
MhlI	GDGCHC	2 cut(s)	34, 886
MmeI	TCCRAC	5 cut(s)	382, 388, 427, 469, 959
MnlI	CCTC	7 cut(s)	278, 427, 440, 544, 816, 929, 982
MseI	TTAA	4 cut(s)	177, 234, 351, 993
MspR9I	CCNGG	1 cut(s)	887
MunI	CAATTG	2 cut(s)	14, 198
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	887
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	2 cut(s)	372, 929
NlaIII	CATG	7 cut(s)	164, 208, 220, 681, 774, 809, 989
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	421, 914
NspI	RCATGY	1 cut(s)	774
PctI	GAATGC	1 cut(s)	228
PfeI	GAWTC	4 cut(s)	9, 273, 288, 454
PkrI	GCNGC	2 cut(s)	166, 574
Psp6I	CCWGG	1 cut(s)	885
PspEI	GGTNACC	1 cut(s)	914
PspGI	CCWGG	1 cut(s)	885
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	593, 604
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	929
SaqAI	TTAA	4 cut(s)	177, 234, 351, 993
SatI	GCNGC	2 cut(s)	165, 573
Sau3AI	GATC	2 cut(s)	372, 929
Sau96I	GGNCC	2 cut(s)	593, 604
ScrFI	CCNGG	1 cut(s)	887
SduI	GDGCHC	2 cut(s)	34, 886
SfaNI	GCATC	2 cut(s)	59, 142
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	604
SmlI	CTYRAG	2 cut(s)	262, 764
SmoI	CTYRAG	2 cut(s)	262, 764
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	3 cut(s)	467, 755, 782
StyD4I	CCNGG	1 cut(s)	885
TaaI	ACNGT	3 cut(s)	36, 214, 328
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	186
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	4 cut(s)	9, 273, 288, 454
Tru1I	TTAA	4 cut(s)	177, 234, 351, 993
Tru9I	TTAA	4 cut(s)	177, 234, 351, 993
TscAI	CASTG	4 cut(s)	39, 51, 426, 823
TseFI	GTSAC	2 cut(s)	421, 914
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	2 cut(s)	421, 914
TspDTI	ATGAA	5 cut(s)	149, 221, 655, 666, 861
TspRI	CASTG	4 cut(s)	39, 51, 426, 823
VneI	GTGCAC	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	604
XapI	RAATTY	3 cut(s)	179, 495, 837
XceI	RCATGY	1 cut(s)	774
XcmI	CCANNNNNNNNNTGG	1 cut(s)	856
XspI	CTAG	3 cut(s)	467, 755, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.