MD11G1138100.v1.1

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013328
Physical Location & Seq
Reverse (-)
12737111 .. 12740005
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1138100.v1.1.491

Sequence Viewer

Length: 1032 bp
ATGGGAGAAATGGCTGGATTCCAATTGGGCGTTATTGGTGCACTGTTTCTTTCAGTGGCATCGTCCGTCTCTATTGTTATATGCAACAAAGCTTTGATGAGCAATCTCGGCTTCCCTTTTGCAACGACGCTTACCAGTTGGCATCTGATGGTAACATTTGGCACCCTTCATGCGGCACAACGTCTCAAATTTTTCGAGAGTAAGTCAATTGACATGAAGACTGTCATGCTCTTTGGCATTCTTAATGGAGTTTCCATTGGATTGCTAAACTTGAGCCTCGGATTCAATTCCATTGGATTCTACCAGATGACCAAGCTTGCAATTATACCCTTTACTGTGTTATTGGAAACTCTTTTCCTTAAAAAGCAATTCAGCCAGAAGATCAAGTTTTCTCTCTTCTTATTAGTTGTTGGAGTTGGAATTGCCTCAGTGACAGACCTCCAGCTCAATTTTGTTGGAACGATTCTCTCTCTTCTAGCCATCGTAACAACCTGTGTTGGACAAATTCTAACAAACACAATACAGAAAAGGCTCAATGTCTCCTCTACTCAGCTTCTCTACCAATCAGCCCCTTTTCAAGCAGCTATTCTTTTTGTATCAGGCCCTGTGGTGGACCAGTTCCTTACCAAGCAAAATGTTTTTGCCCATAAATACTCTTCTATAGTATTGGTATTCATCGTACTTTCATGCCTGATAGCTGTGTCTGTGAACTTCAGCACCTTCTTAGTAATTGGCAAGACATCCCCAGTTACATATCAAGTGCTAGGTCACCTCAAGACATGCCTTGTTCTAGGGTTTGGCTACACATTACTTCATGACCCCTTCACTGAGAGGAATATAATTGGAATTCTGGTTGCCATTTTTGGGATGGGATTGTATTCATATTTTTGTGCCCAGGAAAACAAGAAGAAACAAGCTGGTGGTGACGTCTCATTGGGATCTCCGATTAAAGGAAAGGATGGCACTCCACTTTTGAGCCAAGATAATGATACCCATGAGGTTAAGAAATCAACTAAGAACTCTCTTGTTTGA

Protein Analysis

344

Amino Acids

37.21

Weight (kDa)

9.44

Isoelectric Point (pI)

27.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 21 - 294 2.3e-19 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28315 AT2G28315
fragaria_vesca FvH4_3g31910 FvH4_3g31910 FvH4_3g31910
malus_domestica MD03G1120000.v1.1 MD11G1138100.v1.1
prunus_persica Prupe.6G103500_v2.0.a1
pyrus_communis pycom11g11410
rosa_chinensis RchiOBHm_Chr5g0058681
rosa_laevigata RLG00000035241
rosa_roxburghii Rroxscaffold_1G00021730
rosa_rugosa Rorug05G0317400
rosa_samantha Rh5AG383100 Rh5BG395000 Rh5CG418800 Rh5DG410300
rosa_wichuraiana Rw5G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 930
AccB1I GGYRCC 1 cut(s) 161
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 946
AcsI RAATTY 3 cut(s) 188, 504, 846
AcuI CTGAAG 1 cut(s) 697
AcyI GRCGYC 1 cut(s) 927
AfaI GTAC 1 cut(s) 681
AfiI CCNNNNNNNGG 4 cut(s) 172, 610, 864, 950
AgsI TTSAA 2 cut(s) 286, 578
AjnI CCWGG 1 cut(s) 894
AluBI AGCT 7 cut(s) 92, 316, 445, 553, 584, 698, 917
AluI AGCT 7 cut(s) 92, 316, 445, 553, 584, 698, 917
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 4 cut(s) 73, 188, 544, 934
Alw44I GTGCAC 1 cut(s) 39
AlwI GGATC 1 cut(s) 946
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 1 cut(s) 601
ApaLI GTGCAC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 3 cut(s) 188, 504, 846
AspS9I GGNCC 2 cut(s) 602, 613
AsuHPI GGTGA 2 cut(s) 761, 935
AvaII GGWCC 1 cut(s) 613
BaeGI GKGCMC 2 cut(s) 43, 895
BanI GGYRCC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 593
BccI CCATC 4 cut(s) 142, 488, 862, 953
BciT130I CCWGG 1 cut(s) 896
BcoDI GTCTC 4 cut(s) 73, 188, 544, 934
BfaI CTAG 3 cut(s) 476, 764, 791
BfmI CTRYAG 1 cut(s) 660
BisI GCNGC 2 cut(s) 174, 582
BlsI GCNGC 2 cut(s) 175, 583
Bme1390I CCNGG 1 cut(s) 896
Bme18I GGWCC 1 cut(s) 613
BmgT120I GGNCC 2 cut(s) 602, 613
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 896
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 2 cut(s) 68, 151
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 2 cut(s) 292, 758
BsaHI GRCGYC 1 cut(s) 927
BsaJI CCNNGG 2 cut(s) 277, 894
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 610, 864, 950
Bse1I ACTGG 3 cut(s) 135, 616, 746
BseBI CCWGG 1 cut(s) 896
BseDI CCNNGG 2 cut(s) 277, 894
BseGI GGATG 3 cut(s) 740, 873, 964
BseLI CCNNNNNNNGG 4 cut(s) 172, 610, 864, 950
BseMII CTCAG 3 cut(s) 441, 563, 819
BseNI ACTGG 3 cut(s) 135, 616, 746
BseRI GAGGAG 1 cut(s) 532
BseSI GKGCMC 2 cut(s) 43, 895
BseXI GCAGC 1 cut(s) 593
BshFI GGCC 1 cut(s) 603
BshNI GGYRCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 43
BslI CCNNNNNNNGG 4 cut(s) 172, 610, 864, 950
BsmAI GTCTC 4 cut(s) 73, 188, 544, 934
BsmBI CGTCTC 3 cut(s) 73, 188, 934
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 1 cut(s) 603
Bsp1286I GDGCHC 2 cut(s) 43, 895
Bsp143I GATC 2 cut(s) 381, 938
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 3 cut(s) 440, 562, 820
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 946
BspT107I GGYRCC 1 cut(s) 161
BsrI ACTGG 3 cut(s) 135, 616, 746
BssECI CCNNGG 2 cut(s) 277, 894
BssMI GATC 2 cut(s) 381, 938
BssNI GRCGYC 1 cut(s) 927
Bst2UI CCWGG 1 cut(s) 896
Bst4CI ACNGT 3 cut(s) 45, 223, 337
Bst6I CTCTTC 3 cut(s) 401, 477, 661
BstACI GRCGYC 1 cut(s) 927
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 5 cut(s) 427, 549, 724, 828, 1014
BstEII GGTNACC 1 cut(s) 767
BstF5I GGATG 3 cut(s) 740, 873, 964
BstKTI GATC 2 cut(s) 384, 941
BstMAI GTCTC 4 cut(s) 73, 188, 544, 934
BstMBI GATC 2 cut(s) 381, 938
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNI CCWGG 1 cut(s) 896
BstNSI RCATGY 1 cut(s) 783
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 1 cut(s) 894
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 2 cut(s) 43, 895
BstV1I GCAGC 1 cut(s) 593
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 938
BstYI RGATCY 1 cut(s) 938
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 3 cut(s) 740, 873, 964
BtsIMutI CAGTG 4 cut(s) 41, 60, 435, 825
Cac8I GCNNGC 1 cut(s) 318
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 602, 613
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 680
CviAII CATG 7 cut(s) 170, 214, 226, 687, 780, 815, 995
CviQI GTAC 1 cut(s) 680
DdeI CTNAG 5 cut(s) 427, 549, 724, 828, 1014
DpnI GATC 2 cut(s) 383, 940
DpnII GATC 2 cut(s) 381, 938
Eam1104I CTCTTC 3 cut(s) 401, 477, 661
EarI CTCTTC 3 cut(s) 401, 477, 661
Eco47I GGWCC 1 cut(s) 613
Eco57I CTGAAG 1 cut(s) 697
Eco91I GGTNACC 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 602
EcoO65I GGTNACC 1 cut(s) 767
EcoRI GAATTC 1 cut(s) 846
EcoRII CCWGG 1 cut(s) 894
Esp3I CGTCTC 3 cut(s) 73, 188, 934
FaeI CATG 7 cut(s) 173, 217, 229, 690, 783, 818, 998
FatI CATG 7 cut(s) 169, 213, 225, 686, 779, 814, 994
Fnu4HI GCNGC 2 cut(s) 174, 582
FokI GGATG 3 cut(s) 727, 880, 971
Fsp4HI GCNGC 2 cut(s) 174, 582
FspBI CTAG 3 cut(s) 476, 764, 791
GluI GCNGC 2 cut(s) 174, 582
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 1 cut(s) 603
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 927
Hin1II CATG 7 cut(s) 173, 217, 229, 690, 783, 818, 998
HindIII AAGCTT 2 cut(s) 90, 314
HinfI GANTC 4 cut(s) 18, 282, 297, 463
HphI GGTGA 2 cut(s) 761, 935
Hpy166II GTNNAC 3 cut(s) 41, 613, 709
Hpy188I TCNGA 3 cut(s) 147, 281, 945
Hpy188III TCNNGA 3 cut(s) 196, 775, 815
Hpy8I GTNNAC 3 cut(s) 41, 613, 709
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 3 cut(s) 176, 730, 832
HpyCH4III ACNGT 3 cut(s) 45, 223, 337
HpyCH4IV ACGT 2 cut(s) 181, 927
HpyCH4V TGCA 4 cut(s) 41, 84, 122, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 5 cut(s) 427, 549, 724, 828, 1014
HpySE526I ACGT 2 cut(s) 181, 927
Hsp92I GRCGYC 1 cut(s) 927
Hsp92II CATG 7 cut(s) 173, 217, 229, 690, 783, 818, 998
Kzo9I GATC 2 cut(s) 381, 938
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 2 cut(s) 68, 151
MaeI CTAG 3 cut(s) 476, 764, 791
MaeII ACGT 2 cut(s) 181, 927
MaeIII GTNAC 6 cut(s) 151, 430, 484, 748, 767, 923
MalI GATC 2 cut(s) 383, 940
MboI GATC 2 cut(s) 381, 938
MboII GAAGA 6 cut(s) 229, 388, 391, 464, 648, 919
MfeI CAATTG 2 cut(s) 23, 207
MflI RGATCY 1 cut(s) 938
MhlI GDGCHC 2 cut(s) 43, 895
MmeI TCCRAC 4 cut(s) 391, 397, 436, 478
MnlI CCTC 7 cut(s) 287, 436, 449, 553, 782, 825, 991
MseI TTAA 4 cut(s) 243, 360, 948, 1002
MspR9I CCNGG 1 cut(s) 896
MunI CAATTG 2 cut(s) 23, 207
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 1 cut(s) 896
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 2 cut(s) 381, 938
NlaIII CATG 7 cut(s) 173, 217, 229, 690, 783, 818, 998
NlaIV GGNNCC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 3 cut(s) 430, 767, 923
NspI RCATGY 1 cut(s) 783
PagI TCATGA 1 cut(s) 814
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 4 cut(s) 18, 282, 297, 463
PkrI GCNGC 2 cut(s) 175, 583
Psp6I CCWGG 1 cut(s) 894
PspEI GGTNACC 1 cut(s) 767
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 602, 613
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 938
RsaI GTAC 1 cut(s) 681
RsaNI GTAC 1 cut(s) 680
SaqAI TTAA 4 cut(s) 243, 360, 948, 1002
SatI GCNGC 2 cut(s) 174, 582
Sau3AI GATC 2 cut(s) 381, 938
Sau96I GGNCC 2 cut(s) 602, 613
ScrFI CCNGG 1 cut(s) 896
SduI GDGCHC 2 cut(s) 43, 895
SfaNI GCATC 2 cut(s) 68, 151
SfcI CTRYAG 1 cut(s) 660
SinI GGWCC 1 cut(s) 613
SmlI CTYRAG 2 cut(s) 271, 773
SmoI CTYRAG 2 cut(s) 271, 773
SsiI CCGC 1 cut(s) 173
SspMI CTAG 3 cut(s) 476, 764, 791
StyD4I CCNGG 1 cut(s) 894
TaaI ACNGT 3 cut(s) 45, 223, 337
TaiI ACGT 2 cut(s) 184, 930
TaqI TCGA 1 cut(s) 195
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 4 cut(s) 18, 282, 297, 463
Tru1I TTAA 4 cut(s) 243, 360, 948, 1002
Tru9I TTAA 4 cut(s) 243, 360, 948, 1002
TscAI CASTG 4 cut(s) 48, 60, 435, 832
TseFI GTSAC 3 cut(s) 430, 767, 923
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 3 cut(s) 430, 767, 923
TspDTI ATGAA 6 cut(s) 158, 230, 664, 675, 803, 870
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 4 cut(s) 48, 60, 435, 832
VneI GTGCAC 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 3 cut(s) 188, 504, 846
XceI RCATGY 1 cut(s) 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XspI CTAG 3 cut(s) 476, 764, 791
ZraI GACGTC 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.