Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0013328

Physical Location & Seq

Genomic Coordinates Reverse (-)

11007147 .. 11009946

Gene Structure 2800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1120000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGAGAAATGGCTGGATTCCAATTGGGCGTTATTGGTGCACTGTTTCTTTCAGTGGCATCATCTGTCTCTATTGTTATATGCAACAAAGCTTTGATGAGCAATCTCGGCTTCCCTTTTGCAACAACACTTACCAGTTGGCATCTGATGGTAACATTTGGCACCCTTCATGCGGCACAACGTCTCAAATTTTTCGAGAGTAAATCAATTGACATGAAGACTGTCATGCTCTTTGGTATTCTAAATGGTGTTTCCATTGGGCTGCTGAACTTGAGCCTCGGATTCAATTCCATTGGATTCTACCAGATGACCAAGCTTGCAATTATACCCTTTACTGTGTTACTGGAAACTCTTTTCCTTAAAAAACAATTCAGCCAGAAGATCAAGTTTTCTCTCTTCTTATTAGTTGTTGGAGTTGGAATTGCCTCAGTGACAGACCTCCAGCTCAATTTTGTTGGAACTATTCTCTCTCTTCTAGCCATCGTGACAACCTGTGTTGGACAAATTCTAACAAACACAATACAGAAAAGGCTCAATGTCTCCTCTACTCAGCTTCTCTACCAATCAGCCCCTTTTCAAGCAGCTATTCTTTTTGTATCAGGCCCTGTGGTCGACCAGTTCCTCACCAAGCAAAATGTCTTTGCCCACAAATATTCTTCCATAGTTTTGGTATTCATCATACTCTCATGCCTAATAGCTGTGTCTGTAAACTTCAGCACCTTCTTAGTAATTGGCAAGACATCACCTGTTACATATCAAGTGCTAGGCCACCTTAAGACATGCCTTGTTCTAGGGTTCGGCTACACATTACTTCATGACCCTTTCACTGAGAGGAATATAATTGGAATTCTGGTTGCCATTTTTGGGATGGGATTGTATTCGTATTTCTGTGCCCAGGAAAACAAGAAGAAACAAGCTGGTGGTGACCTCTCATTGGGATCTCAGATCAAAGATAAGGATGGCACTCCACTTTTGATCCAAGATAAAGATAGCCATGAGGTTAAGAAATTAACTAAGAACTCTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

344

Amino Acids

37.38

Weight (kDa)

9.43

Isoelectric Point (pI)

28.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 294	2.1e-19	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28315 AT2G28315
fragaria_vesca	FvH4_3g31910 FvH4_3g31910 FvH4_3g31910
malus_domestica	MD03G1120000.v1.1 MD11G1138100.v1.1
prunus_persica	Prupe.6G103500_v2.0.a1
pyrus_communis	pycom11g11410
rosa_chinensis	RchiOBHm_Chr5g0058681
rosa_laevigata	RLG00000035241
rosa_roxburghii	Rroxscaffold_1G00021730
rosa_rugosa	Rorug05G0317400
rosa_samantha	Rh5AG383100 Rh5BG395000 Rh5CG418800 Rh5DG410300
rosa_wichuraiana	Rw5G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	946, 970
AcsI	RAATTY	3 cut(s)	188, 504, 846
AcuI	CTGAAG	1 cut(s)	697
AfiI	CCNNNNNNNGG	3 cut(s)	172, 864, 934
AflII	CTTAAG	1 cut(s)	773
AgsI	TTSAA	2 cut(s)	286, 578
AjnI	CCWGG	1 cut(s)	894
AluBI	AGCT	7 cut(s)	92, 316, 445, 553, 584, 698, 917
AluI	AGCT	7 cut(s)	92, 316, 445, 553, 584, 698, 917
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	3 cut(s)	73, 188, 544
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	946, 970
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	2 cut(s)	601, 766
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	262, 581
ApoI	RAATTY	3 cut(s)	188, 504, 846
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	3 cut(s)	616, 735, 935
BaeGI	GKGCMC	2 cut(s)	43, 895
BanI	GGYRCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	249, 593
BccI	CCATC	4 cut(s)	142, 488, 862, 953
BciT130I	CCWGG	1 cut(s)	896
BcoDI	GTCTC	3 cut(s)	73, 188, 544
BfaI	CTAG	3 cut(s)	476, 764, 791
BfrI	CTTAAG	1 cut(s)	773
BisI	GCNGC	3 cut(s)	174, 263, 582
BlsI	GCNGC	3 cut(s)	175, 264, 583
Bme1390I	CCNGG	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	896
BmsI	GCATC	2 cut(s)	68, 151
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	277, 894
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 864, 934
Bse1I	ACTGG	3 cut(s)	135, 348, 616
BseBI	CCWGG	1 cut(s)	896
BseDI	CCNNGG	2 cut(s)	277, 894
BseGI	GGATG	2 cut(s)	873, 964
BseLI	CCNNNNNNNGG	3 cut(s)	172, 864, 934
BseMII	CTCAG	4 cut(s)	441, 563, 819, 956
BseNI	ACTGG	3 cut(s)	135, 348, 616
BseRI	GAGGAG	1 cut(s)	532
BseSI	GKGCMC	2 cut(s)	43, 895
BseXI	GCAGC	2 cut(s)	249, 593
BshFI	GGCC	2 cut(s)	603, 768
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	172, 864, 934
BsmAI	GTCTC	3 cut(s)	73, 188, 544
BsmBI	CGTCTC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	603, 768
Bsp1286I	GDGCHC	2 cut(s)	43, 895
Bsp143I	GATC	4 cut(s)	381, 938, 945, 975
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	2 cut(s)	603, 768
BspCNI	CTCAG	4 cut(s)	440, 562, 820, 955
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	946, 970
BspT107I	GGYRCC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	773
BsrI	ACTGG	3 cut(s)	135, 348, 616
BssECI	CCNNGG	2 cut(s)	277, 894
BssMI	GATC	4 cut(s)	381, 938, 945, 975
Bst2UI	CCWGG	1 cut(s)	896
Bst4CI	ACNGT	3 cut(s)	45, 223, 337
Bst6I	CTCTTC	2 cut(s)	401, 477
BstAFI	CTTAAG	1 cut(s)	773
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	6 cut(s)	427, 549, 724, 828, 942, 1014
BstEII	GGTNACC	1 cut(s)	923
BstF5I	GGATG	2 cut(s)	873, 964
BstKTI	GATC	4 cut(s)	384, 941, 948, 978
BstMAI	GTCTC	3 cut(s)	73, 188, 544
BstMBI	GATC	4 cut(s)	381, 938, 945, 975
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	896
BstNSI	RCATGY	1 cut(s)	783
BstPI	GGTNACC	1 cut(s)	923
BstSCI	CCNGG	1 cut(s)	894
BstSLI	GKGCMC	2 cut(s)	43, 895
BstV1I	GCAGC	2 cut(s)	249, 593
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	938
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	938
BsuRI	GGCC	2 cut(s)	603, 768
BtsCI	GGATG	2 cut(s)	873, 964
BtsIMutI	CAGTG	4 cut(s)	41, 60, 435, 825
Cac8I	GCNNGC	1 cut(s)	318
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	814
Cfr13I	GGNCC	1 cut(s)	602
CviAII	CATG	7 cut(s)	170, 214, 226, 687, 780, 815, 995
DdeI	CTNAG	6 cut(s)	427, 549, 724, 828, 942, 1014
DpnI	GATC	4 cut(s)	383, 940, 947, 977
DpnII	GATC	4 cut(s)	381, 938, 945, 975
Eam1104I	CTCTTC	2 cut(s)	401, 477
EarI	CTCTTC	2 cut(s)	401, 477
Eco57I	CTGAAG	1 cut(s)	697
Eco91I	GGTNACC	1 cut(s)	923
EcoO109I	RGGNCCY	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	923
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	894
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	7 cut(s)	173, 217, 229, 690, 783, 818, 998
FatI	CATG	7 cut(s)	169, 213, 225, 686, 779, 814, 994
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	3 cut(s)	174, 263, 582
FokI	GGATG	2 cut(s)	880, 971
Fsp4HI	GCNGC	3 cut(s)	174, 263, 582
FspBI	CTAG	3 cut(s)	476, 764, 791
GluI	GCNGC	3 cut(s)	174, 263, 582
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	603, 768
Hin1II	CATG	7 cut(s)	173, 217, 229, 690, 783, 818, 998
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	2 cut(s)	90, 314
HinfI	GANTC	3 cut(s)	18, 282, 297
HphI	GGTGA	3 cut(s)	616, 735, 935
Hpy166II	GTNNAC	3 cut(s)	41, 613, 709
Hpy188I	TCNGA	3 cut(s)	147, 281, 945
Hpy188III	TCNNGA	3 cut(s)	196, 484, 815
Hpy8I	GTNNAC	3 cut(s)	41, 613, 709
HpyAV	CCTTC	2 cut(s)	176, 730
HpyCH4III	ACNGT	3 cut(s)	45, 223, 337
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	41, 84, 122, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	6 cut(s)	427, 549, 724, 828, 942, 1014
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	7 cut(s)	173, 217, 229, 690, 783, 818, 998
Kzo9I	GATC	4 cut(s)	381, 938, 945, 975
Lsp1109I	GCAGC	2 cut(s)	249, 593
LweI	GCATC	2 cut(s)	68, 151
MaeI	CTAG	3 cut(s)	476, 764, 791
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	6 cut(s)	151, 339, 430, 484, 748, 923
MalI	GATC	4 cut(s)	383, 940, 947, 977
MboI	GATC	4 cut(s)	381, 938, 945, 975
MboII	GAAGA	6 cut(s)	229, 388, 391, 464, 648, 919
MfeI	CAATTG	2 cut(s)	23, 207
MflI	RGATCY	1 cut(s)	938
MhlI	GDGCHC	2 cut(s)	43, 895
MmeI	TCCRAC	4 cut(s)	391, 397, 436, 478
MnlI	CCTC	8 cut(s)	287, 436, 449, 553, 632, 825, 938, 991
MseI	TTAA	4 cut(s)	360, 774, 1002, 1010
MspCI	CTTAAG	1 cut(s)	773
MspR9I	CCNGG	1 cut(s)	896
MunI	CAATTG	2 cut(s)	23, 207
MvaI	CCWGG	1 cut(s)	896
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	4 cut(s)	381, 938, 945, 975
NlaIII	CATG	7 cut(s)	173, 217, 229, 690, 783, 818, 998
NlaIV	GGNNCC	1 cut(s)	163
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	3 cut(s)	430, 484, 923
NspI	RCATGY	1 cut(s)	783
PagI	TCATGA	1 cut(s)	814
PfeI	GAWTC	3 cut(s)	18, 282, 297
PkrI	GCNGC	3 cut(s)	175, 264, 583
Psp6I	CCWGG	1 cut(s)	894
PspEI	GGTNACC	1 cut(s)	923
PspGI	CCWGG	1 cut(s)	894
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	602
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	938
SalI	GTCGAC	1 cut(s)	611
SaqAI	TTAA	4 cut(s)	360, 774, 1002, 1010
SatI	GCNGC	3 cut(s)	174, 263, 582
Sau3AI	GATC	4 cut(s)	381, 938, 945, 975
Sau96I	GGNCC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	896
SduI	GDGCHC	2 cut(s)	43, 895
SfaNI	GCATC	2 cut(s)	68, 151
SmlI	CTYRAG	2 cut(s)	271, 773
SmoI	CTYRAG	2 cut(s)	271, 773
SsiI	CCGC	1 cut(s)	173
SspI	AATATT	1 cut(s)	653
SspMI	CTAG	3 cut(s)	476, 764, 791
StyD4I	CCNGG	1 cut(s)	894
TaaI	ACNGT	3 cut(s)	45, 223, 337
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	195, 612
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	3 cut(s)	18, 282, 297
Tru1I	TTAA	4 cut(s)	360, 774, 1002, 1010
Tru9I	TTAA	4 cut(s)	360, 774, 1002, 1010
TscAI	CASTG	4 cut(s)	48, 60, 435, 832
TseFI	GTSAC	3 cut(s)	430, 484, 923
TseI	GCWGC	2 cut(s)	262, 581
Tsp45I	GTSAC	3 cut(s)	430, 484, 923
TspDTI	ATGAA	4 cut(s)	158, 230, 664, 803
TspRI	CASTG	4 cut(s)	48, 60, 435, 832
Vha464I	CTTAAG	1 cut(s)	773
VneI	GTGCAC	1 cut(s)	39
XapI	RAATTY	3 cut(s)	188, 504, 846
XceI	RCATGY	1 cut(s)	783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	3 cut(s)	476, 764, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.