Rh5AG383100

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013328
Physical Location & Seq
Forward (+)
66069663 .. 66072550
2888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG383100.1

Sequence Viewer

Length: 1005 bp
ATGGGAGAAATGACTGGCTTCCAATTGGGCGTTATTGGTGCACTGTTCCTTTCAGTGGCATCATCTGTGTCCATTGTTATATGCAACAAAGCCTTGATGAGCAACCTTGGCTTCCCATTTGCAACAACACTTACCAGTTGGCATCTCATGGTAACTTTCTGCACACTTCATGTGGCAAATCGTCTCAATTTCTTCGAGAGCAAGTCAATTGACATGAAGACTGTCATGCTCTTTGGCATTCTAAATGGTGTTTCCATTGGACTACTCAATTTGAGTCTGGGATTCAATTCTGTTGGGTTCTACCAGATGACCAAGCTTGCAATCATACCATTTACTGTGTTAGTGGAGACTCTTTTCCTGAAAAAGCAATTCAGCCAGCAAATAAAGTTCTCTCTCTTCCTATTACTTGTTGGAGTTGGCATTGCCTCTGTGACAGACCTCCAGCTCAATTTTGTTGGAACCATTCTCTCGCTTCTAGCCATCATAACAACCTGTGTTGGACAAATTCTAACAAACACAATACAGAAGAGGCTCAATGTTTCTTCTACTCAGCTACTCTACCAGTCAGCACCTTTTCAAGCAGCTATTCTTTTCGTCTCCGGACCTGTGGTGGATCAATTCCTCACCAAGCAAAGCGTCTTTTCCCACAAATACTCCCCCATAGTCTTGGTATTCATCATACTCTCATGCCTAATAGCTGTCTCTGTGAACTTTAGCACCTTTTTGGTGATTGGCAAGACATCACCAGTGACATATCAAGTGCTAGGGCACCTCAAGACATGCCTTGTTCTAGGATTCGGCTATACATTACTACATGACCCTTTCACTGAGAGGAACATAATCGGAATTCTGGTGGCCATTTTTGGGATGGGATTGTATTCATATTTCTGTGCACAAGAGAACAAAAAGAAACAAGCAGCTGACGTTAAGGATGGTGCTCCACTTTTGAGTCAGGATAAAGATAGCCATGAGGTTAAGAAATTAACCAAGAACTCTCTTGTTTGA

Protein Analysis

334

Amino Acids

36.51

Weight (kDa)

9.26

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 21 - 294 4.5e-20 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28315 AT2G28315
fragaria_vesca FvH4_3g31910 FvH4_3g31910 FvH4_3g31910
malus_domestica MD03G1120000.v1.1 MD11G1138100.v1.1
prunus_persica Prupe.6G103500_v2.0.a1
pyrus_communis pycom11g11410
rosa_chinensis RchiOBHm_Chr5g0058681
rosa_laevigata RLG00000035241
rosa_roxburghii Rroxscaffold_1G00021730
rosa_rugosa Rorug05G0317400
rosa_samantha Rh5AG383100 Rh5BG395000 Rh5CG418800 Rh5DG410300
rosa_wichuraiana Rw5G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 768
AccIII TCCGGA 1 cut(s) 599
AclWI GGATC 1 cut(s) 621
AcoI YGGCCR 1 cut(s) 855
AcsI RAATTY 2 cut(s) 504, 846
AfiI CCNNNNNNNGG 2 cut(s) 55, 864
AgsI TTSAA 2 cut(s) 286, 578
AluBI AGCT 6 cut(s) 316, 445, 553, 584, 698, 920
AluI AGCT 6 cut(s) 316, 445, 553, 584, 698, 920
Alw21I GWGCWC 3 cut(s) 43, 895, 940
Alw26I GTCTC 4 cut(s) 188, 341, 601, 706
Alw44I GTGCAC 2 cut(s) 39, 891
AlwI GGATC 1 cut(s) 621
Aor13HI TCCGGA 1 cut(s) 599
AoxI GGCC 1 cut(s) 855
ApaLI GTGCAC 2 cut(s) 39, 891
ApeKI GCWGC 2 cut(s) 581, 917
ApoI RAATTY 2 cut(s) 504, 846
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 3 cut(s) 616, 735, 739
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 3 cut(s) 43, 771, 895
BalI TGGCCA 1 cut(s) 857
BanI GGYRCC 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 3 cut(s) 43, 895, 940
BbvI GCAGC 2 cut(s) 593, 929
BccI CCATC 3 cut(s) 488, 862, 926
BcoDI GTCTC 4 cut(s) 188, 341, 601, 706
BfaI CTAG 3 cut(s) 476, 764, 791
BisI GCNGC 2 cut(s) 582, 918
BlsI GCNGC 2 cut(s) 583, 919
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 2 cut(s) 460, 770
BmsI GCATC 2 cut(s) 68, 151
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 758
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 599
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 864
Bse1I ACTGG 4 cut(s) 19, 135, 562, 746
Bse3DI GCAATG 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 599
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 2 cut(s) 873, 937
BseLI CCNNNNNNNGG 2 cut(s) 55, 864
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 563, 819
BseNI ACTGG 4 cut(s) 19, 135, 562, 746
BseSI GKGCMC 3 cut(s) 43, 771, 895
BseXI GCAGC 2 cut(s) 593, 929
BsgI GTGCAG 1 cut(s) 145
BshFI GGCC 1 cut(s) 857
BshNI GGYRCC 1 cut(s) 768
BsiHKAI GWGCWC 3 cut(s) 43, 895, 940
BsiSI CCGG 1 cut(s) 600
BslI CCNNNNNNNGG 2 cut(s) 55, 864
BsmAI GTCTC 4 cut(s) 188, 341, 601, 706
BsmBI CGTCTC 2 cut(s) 188, 601
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 1 cut(s) 857
Bsp1286I GDGCHC 4 cut(s) 43, 771, 895, 940
Bsp13I TCCGGA 1 cut(s) 599
Bsp143I GATC 1 cut(s) 613
BspANI GGCC 1 cut(s) 857
BspCNI CTCAG 2 cut(s) 562, 820
BspEI TCCGGA 1 cut(s) 599
BspLI GGNNCC 2 cut(s) 460, 770
BspPI GGATC 1 cut(s) 621
BspT107I GGYRCC 1 cut(s) 768
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 4 cut(s) 19, 135, 562, 746
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 613
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 45, 223, 337
Bst6I CTCTTC 2 cut(s) 401, 521
BstC8I GCNNGC 2 cut(s) 318, 377
BstDEI CTNAG 2 cut(s) 549, 828
BstF5I GGATG 2 cut(s) 873, 937
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 4 cut(s) 188, 341, 601, 706
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 783
BstSLI GKGCMC 3 cut(s) 43, 771, 895
BstV1I GCAGC 2 cut(s) 593, 929
BstV2I GAAGAC 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 667
BsuRI GGCC 1 cut(s) 857
BtsCI GGATG 2 cut(s) 873, 937
BtsIMutI CAGTG 4 cut(s) 41, 60, 753, 825
Cac8I GCNNGC 2 cut(s) 318, 377
Cfr13I GGNCC 1 cut(s) 602
CseI GACGC 1 cut(s) 625
CviAII CATG 8 cut(s) 148, 170, 214, 226, 687, 780, 815, 968
DdeI CTNAG 2 cut(s) 549, 828
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 2 cut(s) 401, 521
EarI CTCTTC 2 cut(s) 401, 521
Eco130I CCWWGG 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 602
EcoRI GAATTC 1 cut(s) 846
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
Esp3I CGTCTC 2 cut(s) 188, 601
FaeI CATG 8 cut(s) 151, 173, 217, 229, 690, 783, 818, 971
FatI CATG 8 cut(s) 147, 169, 213, 225, 686, 779, 814, 967
Fnu4HI GCNGC 2 cut(s) 582, 918
FokI GGATG 2 cut(s) 880, 944
Fsp4HI GCNGC 2 cut(s) 582, 918
FspBI CTAG 3 cut(s) 476, 764, 791
GluI GCNGC 2 cut(s) 582, 918
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 1 cut(s) 857
HapII CCGG 1 cut(s) 600
HgaI GACGC 1 cut(s) 625
Hin1II CATG 8 cut(s) 151, 173, 217, 229, 690, 783, 818, 971
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 5 cut(s) 274, 282, 349, 795, 949
HpaII CCGG 1 cut(s) 600
HphI GGTGA 3 cut(s) 616, 735, 739
Hpy166II GTNNAC 3 cut(s) 41, 709, 893
Hpy188I TCNGA 1 cut(s) 845
Hpy188III TCNNGA 5 cut(s) 196, 358, 600, 775, 953
Hpy8I GTNNAC 3 cut(s) 41, 709, 893
HpyCH4III ACNGT 3 cut(s) 45, 223, 337
HpyCH4IV ACGT 1 cut(s) 924
HpyCH4V TGCA 6 cut(s) 41, 84, 122, 162, 320, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 2 cut(s) 549, 828
HpySE526I ACGT 1 cut(s) 924
Hsp92II CATG 8 cut(s) 151, 173, 217, 229, 690, 783, 818, 971
Kpn2I TCCGGA 1 cut(s) 599
Kzo9I GATC 1 cut(s) 613
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 2 cut(s) 593, 929
LweI GCATC 2 cut(s) 68, 151
MaeI CTAG 3 cut(s) 476, 764, 791
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 3 cut(s) 151, 430, 748
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MboII GAAGA 5 cut(s) 184, 229, 388, 534, 538
MfeI CAATTG 2 cut(s) 23, 207
MhlI GDGCHC 4 cut(s) 43, 771, 895, 940
MlsI TGGCCA 1 cut(s) 857
MluNI TGGCCA 1 cut(s) 857
MlyI GAGTC 3 cut(s) 283, 343, 958
MmeI TCCRAC 3 cut(s) 391, 436, 478
MnlI CCTC 7 cut(s) 436, 449, 522, 632, 782, 825, 964
Mox20I TGGCCA 1 cut(s) 857
MroI TCCGGA 1 cut(s) 599
MscI TGGCCA 1 cut(s) 857
MseI TTAA 3 cut(s) 927, 975, 983
Msp20I TGGCCA 1 cut(s) 857
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 1 cut(s) 600
MunI CAATTG 2 cut(s) 23, 207
Mva1269I GAATGC 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 1 cut(s) 613
NlaIII CATG 8 cut(s) 151, 173, 217, 229, 690, 783, 818, 971
NlaIV GGNNCC 2 cut(s) 460, 770
NmuCI GTSAC 2 cut(s) 430, 748
NspI RCATGY 1 cut(s) 783
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 282, 795
PkrI GCNGC 2 cut(s) 583, 919
PleI GAGTC 3 cut(s) 282, 343, 957
PpsI GAGTC 3 cut(s) 282, 343, 957
PspN4I GGNNCC 2 cut(s) 460, 770
PspPI GGNCC 1 cut(s) 602
PvuII CAGCTG 1 cut(s) 920
SaqAI TTAA 3 cut(s) 927, 975, 983
SatI GCNGC 2 cut(s) 582, 918
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 3 cut(s) 283, 343, 958
SduI GDGCHC 4 cut(s) 43, 771, 895, 940
SfaNI GCATC 2 cut(s) 68, 151
SinI GGWCC 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SspMI CTAG 3 cut(s) 476, 764, 791
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 3 cut(s) 45, 223, 337
TaiI ACGT 1 cut(s) 927
TaqI TCGA 1 cut(s) 195
TfiI GAWTC 2 cut(s) 282, 795
Tru1I TTAA 3 cut(s) 927, 975, 983
Tru9I TTAA 3 cut(s) 927, 975, 983
TscAI CASTG 4 cut(s) 48, 60, 753, 832
TseFI GTSAC 2 cut(s) 430, 748
TseI GCWGC 2 cut(s) 581, 917
Tsp45I GTSAC 2 cut(s) 430, 748
TspDTI ATGAA 4 cut(s) 158, 230, 664, 870
TspRI CASTG 4 cut(s) 48, 60, 753, 832
VneI GTGCAC 2 cut(s) 39, 891
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 2 cut(s) 504, 846
XceI RCATGY 1 cut(s) 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XspI CTAG 3 cut(s) 476, 764, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.