Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013328

Physical Location & Seq

Genomic Coordinates Reverse (-)

26748154 .. 26751162

Gene Structure 3009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00021730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGAGAAATGACCGGCTTCCAATTGGGCGTTATTGGTGCACTGTTCCTTTCAGTGGCATCATCTGTGTCCATTGTTATATGCAACAAAGCCTTGATGAGCAACCTTGGCTTCCCATTTGCAACAACACTTACCAGTTGGCATCTCATGGTAACTTTCTGCACACTTCATGTGGCAAATCGTCTCAATTTCTTCGAGAGCAAGTCAATTGACATGAAGACTGTCATGCTCTTTGGCATTCTAAATGGTGTTTCCATTGGACTACTCAATTTGAGTCTGGGATTCAATTCTGTTGGGTTCTACCAGATGACCAAGCTTGCAATCATACCATTTACCGTGTTAGTGGAGACTCTTTTCCTAAAAAAGCAATTCAGCCAGAAAATAAAGTTTTCTCTCTTCGTATTACTTGTTGGAGTTGGCATTGCCTCTGTGACAGACCTCCAGCTCAATTTTGTTGGAACCATTCTCTCGCTTCTAGCCATCATAACAACCTGTGTTGGACAAATTCTAACAAATACAATACAGAAGAGGCTCAATGTTTCTTCTACTCAGCTACTCTACCAGTCAGCACCTTTTCAAGCAGCTATTCTTTTCGTCTCCGGACCTGTGGTGGATCAGTTCCTCACCAAGCAAAGCGTATTCATCATACTCTCATGCCTAATAGCTGTGTCTGTGAACTTTAGCACCTTTTTGGTGATTGGCAAGACATCACCAGTGACATATCAAGTGCTAGGGCACCTCAAGACATGCCTTGTTCTAGGGTTCGGCTATACATTACTACATGACCCTTTCACTGAGAGGAACATAATCGGAATTCTGGTGGCCATTTTTGGGATGGGATTGTATTCATATTTCTGTGCACAAGAGAACAAAAAGAAACAAGCAGCTGACGTTAAGGATGGTGCTCCACTTTTGAGTCAGGATAAAGATAGCCATGAGGTTAAGAAATTAACCAAGAACTCTCTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

323

Amino Acids

35.22

Weight (kDa)

9.27

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 283	9.4e-17	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28315 AT2G28315
fragaria_vesca	FvH4_3g31910 FvH4_3g31910 FvH4_3g31910
malus_domestica	MD03G1120000.v1.1 MD11G1138100.v1.1
prunus_persica	Prupe.6G103500_v2.0.a1
pyrus_communis	pycom11g11410
rosa_chinensis	RchiOBHm_Chr5g0058681
rosa_laevigata	RLG00000035241
rosa_roxburghii	Rroxscaffold_1G00021730
rosa_rugosa	Rorug05G0317400
rosa_samantha	Rh5AG383100 Rh5BG395000 Rh5CG418800 Rh5DG410300
rosa_wichuraiana	Rw5G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	735
AccIII	TCCGGA	1 cut(s)	599
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	822
AcsI	RAATTY	2 cut(s)	504, 813
AfiI	CCNNNNNNNGG	2 cut(s)	55, 831
AgsI	TTSAA	2 cut(s)	286, 578
AluBI	AGCT	6 cut(s)	316, 445, 553, 584, 665, 887
AluI	AGCT	6 cut(s)	316, 445, 553, 584, 665, 887
Alw21I	GWGCWC	3 cut(s)	43, 862, 907
Alw26I	GTCTC	3 cut(s)	188, 341, 601
Alw44I	GTGCAC	2 cut(s)	39, 858
AlwI	GGATC	1 cut(s)	621
Aor13HI	TCCGGA	1 cut(s)	599
AoxI	GGCC	1 cut(s)	822
ApaLI	GTGCAC	2 cut(s)	39, 858
ApeKI	GCWGC	2 cut(s)	581, 884
ApoI	RAATTY	2 cut(s)	504, 813
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	3 cut(s)	616, 702, 706
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	3 cut(s)	43, 738, 862
BalI	TGGCCA	1 cut(s)	824
BanI	GGYRCC	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	3 cut(s)	43, 862, 907
BbvI	GCAGC	2 cut(s)	593, 896
BccI	CCATC	3 cut(s)	488, 829, 893
BcoDI	GTCTC	3 cut(s)	188, 341, 601
BfaI	CTAG	3 cut(s)	476, 731, 758
BisI	GCNGC	2 cut(s)	582, 885
BlsI	GCNGC	2 cut(s)	583, 886
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	460, 737
BmsI	GCATC	2 cut(s)	68, 151
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	725
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 831
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	3 cut(s)	135, 562, 713
Bse3DI	GCAATG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	840, 904
BseLI	CCNNNNNNNGG	2 cut(s)	55, 831
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	563, 786
BseNI	ACTGG	3 cut(s)	135, 562, 713
BseSI	GKGCMC	3 cut(s)	43, 738, 862
BseXI	GCAGC	2 cut(s)	593, 896
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	824
BshNI	GGYRCC	1 cut(s)	735
BsiHKAI	GWGCWC	3 cut(s)	43, 862, 907
BsiSI	CCGG	2 cut(s)	15, 600
BslI	CCNNNNNNNGG	2 cut(s)	55, 831
BsmAI	GTCTC	3 cut(s)	188, 341, 601
BsmBI	CGTCTC	2 cut(s)	188, 601
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	824
Bsp1286I	GDGCHC	4 cut(s)	43, 738, 862, 907
Bsp13I	TCCGGA	1 cut(s)	599
Bsp143I	GATC	1 cut(s)	613
BspANI	GGCC	1 cut(s)	824
BspCNI	CTCAG	2 cut(s)	562, 787
BspEI	TCCGGA	1 cut(s)	599
BspLI	GGNNCC	2 cut(s)	460, 737
BspPI	GGATC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	735
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	135, 562, 713
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	3 cut(s)	45, 223, 337
Bst6I	CTCTTC	2 cut(s)	401, 521
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	549, 795
BstF5I	GGATG	2 cut(s)	840, 904
BstKTI	GATC	1 cut(s)	616
BstMAI	GTCTC	3 cut(s)	188, 341, 601
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	750
BstSLI	GKGCMC	3 cut(s)	43, 738, 862
BstV1I	GCAGC	2 cut(s)	593, 896
BstV2I	GAAGAC	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	824
BtsCI	GGATG	2 cut(s)	840, 904
BtsIMutI	CAGTG	4 cut(s)	41, 60, 720, 792
Cac8I	GCNNGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	602
CviAII	CATG	8 cut(s)	148, 170, 214, 226, 654, 747, 782, 935
DdeI	CTNAG	2 cut(s)	549, 795
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
EaeI	YGGCCR	1 cut(s)	822
Eam1104I	CTCTTC	2 cut(s)	401, 521
EarI	CTCTTC	2 cut(s)	401, 521
Eco130I	CCWWGG	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	813
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	2 cut(s)	188, 601
FaeI	CATG	8 cut(s)	151, 173, 217, 229, 657, 750, 785, 938
FatI	CATG	8 cut(s)	147, 169, 213, 225, 653, 746, 781, 934
Fnu4HI	GCNGC	2 cut(s)	582, 885
FokI	GGATG	2 cut(s)	847, 911
Fsp4HI	GCNGC	2 cut(s)	582, 885
FspBI	CTAG	3 cut(s)	476, 731, 758
GluI	GCNGC	2 cut(s)	582, 885
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	824
HapII	CCGG	2 cut(s)	15, 600
Hin1II	CATG	8 cut(s)	151, 173, 217, 229, 657, 750, 785, 938
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	4 cut(s)	274, 282, 349, 916
HpaII	CCGG	2 cut(s)	15, 600
HphI	GGTGA	3 cut(s)	616, 702, 706
Hpy166II	GTNNAC	3 cut(s)	41, 676, 860
Hpy188I	TCNGA	1 cut(s)	812
Hpy188III	TCNNGA	4 cut(s)	196, 600, 742, 920
Hpy8I	GTNNAC	3 cut(s)	41, 676, 860
HpyCH4III	ACNGT	3 cut(s)	45, 223, 337
HpyCH4IV	ACGT	1 cut(s)	891
HpyCH4V	TGCA	6 cut(s)	41, 84, 122, 162, 320, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	549, 795
HpySE526I	ACGT	1 cut(s)	891
Hsp92II	CATG	8 cut(s)	151, 173, 217, 229, 657, 750, 785, 938
Kpn2I	TCCGGA	1 cut(s)	599
Kzo9I	GATC	1 cut(s)	613
LmnI	GCTCC	1 cut(s)	910
Lsp1109I	GCAGC	2 cut(s)	593, 896
LweI	GCATC	2 cut(s)	68, 151
MaeI	CTAG	3 cut(s)	476, 731, 758
MaeII	ACGT	1 cut(s)	891
MaeIII	GTNAC	3 cut(s)	151, 430, 715
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	5 cut(s)	184, 229, 388, 534, 538
MfeI	CAATTG	2 cut(s)	23, 207
MhlI	GDGCHC	4 cut(s)	43, 738, 862, 907
MlsI	TGGCCA	1 cut(s)	824
MluNI	TGGCCA	1 cut(s)	824
MlyI	GAGTC	3 cut(s)	283, 343, 925
MmeI	TCCRAC	3 cut(s)	391, 436, 478
MnlI	CCTC	7 cut(s)	436, 449, 522, 632, 749, 792, 931
Mox20I	TGGCCA	1 cut(s)	824
MroI	TCCGGA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	824
MseI	TTAA	3 cut(s)	894, 942, 950
Msp20I	TGGCCA	1 cut(s)	824
MspA1I	CMGCKG	1 cut(s)	887
MspI	CCGG	2 cut(s)	15, 600
MunI	CAATTG	2 cut(s)	23, 207
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	1 cut(s)	613
NlaIII	CATG	8 cut(s)	151, 173, 217, 229, 657, 750, 785, 938
NlaIV	GGNNCC	2 cut(s)	460, 737
NmuCI	GTSAC	2 cut(s)	430, 715
NspI	RCATGY	1 cut(s)	750
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	2 cut(s)	583, 886
PleI	GAGTC	3 cut(s)	282, 343, 924
PpsI	GAGTC	3 cut(s)	282, 343, 924
PspN4I	GGNNCC	2 cut(s)	460, 737
PspPI	GGNCC	1 cut(s)	602
PvuII	CAGCTG	1 cut(s)	887
SaqAI	TTAA	3 cut(s)	894, 942, 950
SatI	GCNGC	2 cut(s)	582, 885
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	3 cut(s)	283, 343, 925
SduI	GDGCHC	4 cut(s)	43, 738, 862, 907
SfaNI	GCATC	2 cut(s)	68, 151
SinI	GGWCC	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SspMI	CTAG	3 cut(s)	476, 731, 758
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	45, 223, 337
TaiI	ACGT	1 cut(s)	894
TaqI	TCGA	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	3 cut(s)	894, 942, 950
Tru9I	TTAA	3 cut(s)	894, 942, 950
TscAI	CASTG	4 cut(s)	48, 60, 720, 799
TseFI	GTSAC	2 cut(s)	430, 715
TseI	GCWGC	2 cut(s)	581, 884
Tsp45I	GTSAC	2 cut(s)	430, 715
TspDTI	ATGAA	4 cut(s)	158, 230, 631, 837
TspRI	CASTG	4 cut(s)	48, 60, 720, 799
VneI	GTGCAC	2 cut(s)	39, 858
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	2 cut(s)	504, 813
XceI	RCATGY	1 cut(s)	750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XspI	CTAG	3 cut(s)	476, 731, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.