AT2G28605

Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015994
Physical Location & Seq
Forward (+)
12254888 .. 12255923
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28605.1

Sequence Viewer

Length: 699 bp
ATGTGGTCGCAAAGCTTCTTAGGTTCTGCTCCCAAATTATGTCTCTTCTCATCTTCTCTTCCTCCTTTCTCTCATCACAAGATCCATAAATTCTTCTGCTTTGCCCAAAATCCATCATCCACTGTTAGCATCAATCTCAGCAAAAGACATTTGAATCTCTCAATTCTCACACTCTTCTTCAATGGGTTCTTGTTGGATAATAAAGCCAAATCCATGGAAGAACTTCAAAGATACACTGATTCCAACAATGGCTTCACTCTTCTCATACCCTCTTCTTATACAAAGGTAGAGAAAGCAGGAGCTAATGCTCTGTTTGAAGAACTAAACAATGGAAGCAACAATATTGGTGTTGTTGTTAGTCCTGTCCGTATAAAGAGCCTTGACCAATTTGGTTCTCCTCAATTTGTTGCTGATAAGCTTATCAACGCAGAGAAACGAAAGGAAAGCACAAAGGAAGCAGAAGTTGTATCAGTGGGAGAGAGAGCAGGATTAGGACAACAAGTGTATGAGTTTGAATACAAAATTGATAGTACAAGAGGAGGAATCAAGAGGGTTTTCTCAGCTGCGTTTGTGAGTTCTAACAAGCTTTATCTATTGAATGTTGTTCATTCAGATAAACCAGAGAATCCATTGGATTCAAGTACGAGAATGTCGTTGGAACAAGTTCTTCACTCCTTTGATGCTCTGCCTCTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

232

Amino Acids

25.8

Weight (kDa)

8.79

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 74 - 227 3.6e-32 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28605
fragaria_vesca FvH4_1g24980
malus_domestica MD01G1000300.v1.1
prunus_persica Prupe.4G276300_v2.0.a1
pyrus_communis pycom420g00070
rosa_chinensis RchiOBHm_Chr2g0122611
rosa_laevigata RLG00000018695
rosa_multiflora Rmu_sc0003133.1_g000009
rosa_roxburghii Rroxscaffold_2G00121430
rosa_rugosa Rorug02G0240100
rosa_samantha Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana Rw2G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 2 cut(s) 532, 643
AgsI TTSAA 7 cut(s) 154, 181, 227, 317, 515, 598, 639
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 5 cut(s) 15, 302, 418, 563, 586
AluI AGCT 5 cut(s) 15, 302, 418, 563, 586
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 2 cut(s) 222, 663
BbvI GCAGC 1 cut(s) 550
BccI CCATC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 47
BisI GCNGC 1 cut(s) 564
BlsI GCNGC 1 cut(s) 565
BmsI GCATC 2 cut(s) 138, 670
BsaJI CCNNGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 151, 573
BseRI GAGGAG 2 cut(s) 387, 552
BseXI GCAGC 1 cut(s) 550
BsmAI GTCTC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 81
Bsp19I CCATGG 1 cut(s) 213
BspCNI CTCAG 2 cut(s) 150, 572
BspPI GGATC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 5 cut(s) 50, 63, 179, 264, 277
BstDEI CTNAG 3 cut(s) 19, 137, 559
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 116
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 550
BstX2I RGATCY 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 116
BtsIMutI CAGTG 3 cut(s) 120, 234, 477
Csp6I GTAC 2 cut(s) 531, 642
CviAII CATG 2 cut(s) 214, 696
CviJI RGCY 8 cut(s) 15, 206, 252, 302, 378, 418, 563, 586
CviKI_1 RGCY 8 cut(s) 15, 206, 252, 302, 378, 418, 563, 586
CviQI GTAC 2 cut(s) 531, 642
DdeI CTNAG 3 cut(s) 19, 137, 559
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eam1104I CTCTTC 5 cut(s) 50, 63, 179, 264, 277
EarI CTCTTC 5 cut(s) 50, 63, 179, 264, 277
Eco130I CCWWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 217, 699
FaiI YATR 8 cut(s) 40, 87, 215, 266, 279, 371, 507, 697
FatI CATG 2 cut(s) 213, 695
Fnu4HI GCNGC 1 cut(s) 564
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 564
GluI GCNGC 1 cut(s) 564
Hin1II CATG 2 cut(s) 217, 699
HindIII AAGCTT 3 cut(s) 13, 416, 584
HinfI GANTC 5 cut(s) 154, 239, 543, 625, 635
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 1 cut(s) 547
HpyCH4III ACNGT 1 cut(s) 124
HpyF3I CTNAG 3 cut(s) 19, 137, 559
Hsp92II CATG 2 cut(s) 217, 699
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 34, 299
LpnPI CCDG 4 cut(s) 282, 375, 471, 633
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 2 cut(s) 138, 670
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MflI RGATCY 1 cut(s) 81
MluCI AATT 6 cut(s) 35, 89, 162, 386, 401, 522
MmeI TCCRAC 3 cut(s) 174, 267, 636
MnlI CCTC 7 cut(s) 72, 280, 408, 530, 533, 543, 699
MroXI GAANNNNTTC 2 cut(s) 222, 663
MspA1I CMGCKG 1 cut(s) 563
NcoI CCATGG 1 cut(s) 213
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 217, 699
PcsI WCGNNNNNNNCGW 1 cut(s) 650
PdmI GAANNNNTTC 2 cut(s) 222, 663
PfeI GAWTC 5 cut(s) 154, 239, 543, 625, 635
PkrI GCNGC 1 cut(s) 565
PsuI RGATCY 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 532, 643
RsaNI GTAC 2 cut(s) 531, 642
SatI GCNGC 1 cut(s) 564
Sau3AI GATC 1 cut(s) 81
SetI ASST 7 cut(s) 17, 25, 288, 304, 420, 565, 588
SfaNI GCATC 2 cut(s) 138, 670
Sse9I AATT 6 cut(s) 35, 89, 162, 386, 401, 522
SspI AATATT 1 cut(s) 343
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 124
TasI AATT 6 cut(s) 35, 89, 162, 386, 401, 522
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 5 cut(s) 154, 239, 543, 625, 635
TscAI CASTG 3 cut(s) 127, 241, 477
TseI GCWGC 1 cut(s) 563
TspDTI ATGAA 1 cut(s) 596
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 3 cut(s) 127, 241, 477
XapI RAATTY 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 222, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.