Rh2CG285500

PsbP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015994
Physical Location & Seq
Reverse (-)
32015947 .. 32019237
3291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG285500.1

Sequence Viewer

Length: 540 bp
ATGGCTTTGCATATTTGCAACTGCTTTGCTCTCTCAAACCATAAACAAACCCACACTCAGCAACCCTGCTTCTCAAACTCAAACTCAAAGCCCAAAGCTTCTTCTTCACTTCAAACACCACCTCATTTGAGTGATTTGACCAAGAGAAGCCTCAGCCTCTCACTCTTTGCAGCAGTTTTCTTAAATGGGGTCCTCCCAAACTCACCCATTTGCGCTCAAGAATTGGAGCTCGAGCGCTACACGGATTCCAAGGAGGGCTTCACTCTCCTCCGGCCCTCCTCCTGGATAAAGGTTGATAAAGCAGGGGCCACTGCTCTGTTTGAAGAGGCAAGTAATGGCAGCAACAATGCTGGCGTTGTCGTCAACCCGGTTCGGCTTAAAACACTTGGAGAGTTTGGCAGTCCTCAGTTTGTAGCTGATAAGCTTATCCAAGCCGAAAAGCGCAAGGTAATTTGCTTCTTTCGAATGTGTATCTTCGTCTCCGTGTTGCTGATGGATTATGATGGTGTTGTGGAGAATGATTTTGTTGTTGTAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

179

Amino Acids

19.73

Weight (kDa)

8.23

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 77 - 145 5.6e-15 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28605
fragaria_vesca FvH4_1g24980
malus_domestica MD01G1000300.v1.1
prunus_persica Prupe.4G276300_v2.0.a1
pyrus_communis pycom420g00070
rosa_chinensis RchiOBHm_Chr2g0122611
rosa_laevigata RLG00000018695
rosa_multiflora Rmu_sc0003133.1_g000009
rosa_roxburghii Rroxscaffold_2G00121430
rosa_rugosa Rorug02G0240100
rosa_samantha Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana Rw2G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 113, 323
AjnI CCWGG 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 4 cut(s) 98, 229, 416, 424
AluI AGCT 4 cut(s) 98, 229, 416, 424
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 484
Ama87I CYCGRG 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 2 cut(s) 272, 306
ApeKI GCWGC 2 cut(s) 170, 339
AspLEI GCGC 3 cut(s) 215, 237, 444
AspS9I GGNCC 3 cut(s) 190, 273, 306
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 195
AsuII TTCGAA 1 cut(s) 463
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 182, 351
BccI CCATC 2 cut(s) 487, 497
BciT130I CCWGG 1 cut(s) 283
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 2 cut(s) 171, 340
BlsI GCNGC 2 cut(s) 172, 341
Bme1390I CCNGG 2 cut(s) 283, 368
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 3 cut(s) 190, 273, 306
BmiI GGNNCC 2 cut(s) 191, 307
BmrFI CCNGG 2 cut(s) 283, 368
Bpu10I CCTNAGC 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 463
BpuEI CTTGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 71, 166, 419
BseRI GAGGAG 2 cut(s) 257, 268
BseXI GCAGC 2 cut(s) 182, 351
BshFI GGCC 2 cut(s) 274, 308
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 2 cut(s) 271, 368
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 484
BsmBI CGTCTC 1 cut(s) 484
BsnI GGCC 2 cut(s) 274, 308
BsoBI CYCGRG 1 cut(s) 230
Bsp119I TTCGAA 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 231
BspANI GGCC 2 cut(s) 274, 308
BspCNI CTCAG 3 cut(s) 70, 165, 418
BspLI GGNNCC 2 cut(s) 191, 307
BspT104I TTCGAA 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 318
BstBI TTCGAA 1 cut(s) 463
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 57, 152, 405
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 3 cut(s) 215, 237, 444
BstMAI GTCTC 1 cut(s) 484
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 281, 366
BstV1I GCAGC 2 cut(s) 182, 351
BsuRI GGCC 2 cut(s) 274, 308
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 3 cut(s) 215, 237, 444
Cfr13I GGNCC 3 cut(s) 190, 273, 306
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
DdeI CTNAG 3 cut(s) 57, 152, 405
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 190
Eco47III AGCGCT 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 484
FaiI YATR 3 cut(s) 12, 42, 501
FalI AAGNNNNNCTT 2 cut(s) 242, 274
Fnu4HI GCNGC 2 cut(s) 171, 340
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 171, 340
GlaI GCGC 3 cut(s) 214, 236, 443
GluI GCNGC 2 cut(s) 171, 340
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 274, 308
HapII CCGG 2 cut(s) 271, 368
HhaI GCGC 3 cut(s) 215, 237, 444
Hin6I GCGC 3 cut(s) 213, 235, 442
HinP1I GCGC 3 cut(s) 213, 235, 442
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 2 cut(s) 96, 422
HinfI GANTC 1 cut(s) 245
HpaII CCGG 2 cut(s) 271, 368
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 364
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 10, 18, 170
HpyF3I CTNAG 3 cut(s) 57, 152, 405
HspAI GCGC 3 cut(s) 213, 235, 442
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 7 cut(s) 79, 268, 284, 288, 295, 336, 381
Lsp1109I GCAGC 2 cut(s) 182, 351
MboII GAAGA 4 cut(s) 93, 96, 335, 466
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 2 cut(s) 221, 450
MseI TTAA 2 cut(s) 182, 378
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 2 cut(s) 271, 368
MspR9I CCNGG 2 cut(s) 283, 368
MvaI CCWGG 1 cut(s) 283
NciI CCSGG 1 cut(s) 368
NlaIV GGNNCC 2 cut(s) 191, 307
NspV TTCGAA 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 230
PfeI GAWTC 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 2 cut(s) 172, 341
PpuMI RGGWCCY 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 191, 307
PspPI GGNCC 3 cut(s) 190, 273, 306
PspPPI RGGWCCY 1 cut(s) 190
PspXI VCTCGAGB 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 182, 378
SatI GCNGC 2 cut(s) 171, 340
Sau96I GGNCC 3 cut(s) 190, 273, 306
ScrFI CCNGG 2 cut(s) 283, 368
SduI GDGCHC 1 cut(s) 231
SetI ASST 7 cut(s) 100, 124, 231, 294, 418, 426, 450
Sfr274I CTCGAG 1 cut(s) 230
SfuI TTCGAA 1 cut(s) 463
SinI GGWCC 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 216, 230
SmoI CTYRAG 2 cut(s) 216, 230
Sse9I AATT 2 cut(s) 221, 450
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 281, 366
StyI CCWWGG 1 cut(s) 249
TaqI TCGA 2 cut(s) 231, 463
TasI AATT 2 cut(s) 221, 450
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 182, 378
Tru9I TTAA 2 cut(s) 182, 378
TscAI CASTG 1 cut(s) 316
TseI GCWGC 2 cut(s) 170, 339
TspGWI ACGGA 2 cut(s) 257, 472
TspRI CASTG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.