FvH4_1g24980

PsbP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015994
Physical Location & Seq
Reverse (-)
16767081 .. 16773174
6094 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24980.t1

Sequence Viewer

Length: 702 bp
ATGTCTCTGCACATTTGCAACTGCTTTGCTCTCTCAAACTACAAACAAGCCCACACTCGGCAACCCTGCTTCTCAAACTCAAAGCCCAATCCTTCTTCTTCTTCTTCTTCTTCTTCACTTCAAACACCTCCTCATTTCACCAAGAGAAGCCTCGCATTCTCACTTGTTGCACCACTTTTATTAAATGGGGTCCTCCCAAACTTGCCCATTTTCGCTGAGGAGTTGGAGCTCGAGCGCTACACGGATTCCAAGGAGGGCTTCACTCTCCTCCGGCCCTCCTCTTGGATTAAGGTTGATAAAGCAGGGGCCACTGCTCTGTTTGAAGAGGCAAGTAATAAGAGCAACAATGCTGGTGTTGTGGTTAACCCGGTTCGGCTTAACACCCTTGCAGAGTTTGGCACTCCTCAGTTTGTAGCTGATAAGCTTATACAAGCTGAAAAGCGCAAGGAAAGTACGAAAGATGCCGAGGTTATTGGAGTTGCAGAGAGATCAGGTAAGGATGGGCTACAAGTATACGAATTTGAGTATAAGGTTGATAGCACTAGGGGAGGGATGAAGAGGATTTTTTCAGCTGTATTTGTTGCCTCAAAGAAGCTCTACCTCTTAAACATTACTCACTCAGACAGACCAGAGAGTCCTCTTAGCCCCTATACCAGACTGATGTTGGAACAAGCTCTTCATTCTTTTGATGCAACAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

234

Amino Acids

25.76

Weight (kDa)

8.69

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 77 - 230 1.7e-31 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28605
fragaria_vesca FvH4_1g24980
malus_domestica MD01G1000300.v1.1
prunus_persica Prupe.4G276300_v2.0.a1
pyrus_communis pycom420g00070
rosa_chinensis RchiOBHm_Chr2g0122611
rosa_laevigata RLG00000018695
rosa_multiflora Rmu_sc0003133.1_g000009
rosa_roxburghii Rroxscaffold_2G00121430
rosa_rugosa Rorug02G0240100
rosa_samantha Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana Rw2G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 633
AccI GTMKAC 1 cut(s) 513
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 1 cut(s) 454
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 57, 282
AgsI TTSAA 2 cut(s) 122, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 7 cut(s) 229, 416, 424, 434, 572, 595, 674
AluI AGCT 7 cut(s) 229, 416, 424, 434, 572, 595, 674
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 9
Ama87I CYCGRG 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 2 cut(s) 272, 306
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 2 cut(s) 237, 444
AspS9I GGNCC 3 cut(s) 190, 273, 306
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 216
BccI CCATC 1 cut(s) 494
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 3 cut(s) 190, 273, 306
BmiI GGNNCC 2 cut(s) 191, 307
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 451, 679
Bpu10I CCTNAGC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 249, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 282
BseDI CCNNGG 2 cut(s) 249, 465
BseGI GGATG 2 cut(s) 505, 558
BseLI CCNNNNNNNGG 2 cut(s) 57, 282
BseMII CTCAG 3 cut(s) 207, 419, 633
BseRI GAGGAG 5 cut(s) 120, 233, 257, 268, 393
BshFI GGCC 2 cut(s) 274, 308
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 2 cut(s) 271, 368
BslI CCNNNNNNNGG 2 cut(s) 57, 282
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 2 cut(s) 274, 308
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 488
BspANI GGCC 2 cut(s) 274, 308
BspCNI CTCAG 3 cut(s) 208, 418, 632
BspLI GGNNCC 2 cut(s) 191, 307
BspQI GCTCTTC 1 cut(s) 681
BssECI CCNNGG 2 cut(s) 249, 465
BssMI GATC 1 cut(s) 488
BssNAI GTATAC 1 cut(s) 514
BssT1I CCWWGG 1 cut(s) 249
Bst1107I GTATAC 1 cut(s) 514
Bst6I CTCTTC 3 cut(s) 318, 551, 681
BstDEI CTNAG 4 cut(s) 216, 405, 619, 641
BstF5I GGATG 2 cut(s) 505, 558
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 237, 444
BstKTI GATC 1 cut(s) 491
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 366
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 2 cut(s) 274, 308
BtsCI GGATG 2 cut(s) 505, 558
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
CfoI GCGC 2 cut(s) 237, 444
Cfr13I GGNCC 3 cut(s) 190, 273, 306
Csp6I GTAC 1 cut(s) 453
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 4 cut(s) 216, 405, 619, 641
DpnI GATC 1 cut(s) 490
DpnII GATC 1 cut(s) 488
DrdI GACNNNNNNGTC 1 cut(s) 633
DseDI GACNNNNNNGTC 1 cut(s) 633
Eam1104I CTCTTC 3 cut(s) 318, 551, 681
EarI CTCTTC 3 cut(s) 318, 551, 681
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 190
Eco47III AGCGCT 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 249
FaiI YATR 4 cut(s) 428, 514, 528, 651
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FblI GTMKAC 1 cut(s) 513
FokI GGATG 2 cut(s) 512, 565
FriOI GRGCYC 1 cut(s) 231
FspBI CTAG 1 cut(s) 543
GlaI GCGC 2 cut(s) 236, 443
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 274, 308
HapII CCGG 2 cut(s) 271, 368
HhaI GCGC 2 cut(s) 237, 444
Hin6I GCGC 2 cut(s) 235, 442
HinP1I GCGC 2 cut(s) 235, 442
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 2 cut(s) 245, 634
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 2 cut(s) 271, 368
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 364, 514
Hpy188I TCNGA 1 cut(s) 622
Hpy8I GTNNAC 2 cut(s) 364, 514
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 6 cut(s) 10, 18, 170, 389, 482, 692
HpyF3I CTNAG 4 cut(s) 216, 405, 619, 641
HspAI GCGC 2 cut(s) 235, 442
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 1 cut(s) 488
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 79, 284, 288, 336, 381, 477, 642, 667
LweI GCATC 2 cut(s) 451, 679
MaeI CTAG 1 cut(s) 543
MalI GATC 1 cut(s) 490
MboI GATC 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 518
MlyI GAGTC 1 cut(s) 643
MmeI TCCRAC 2 cut(s) 204, 645
MseI TTAA 5 cut(s) 182, 288, 363, 378, 605
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 2 cut(s) 271, 368
MspR9I CCNGG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 368
NdeII GATC 1 cut(s) 488
NlaIV GGNNCC 2 cut(s) 191, 307
NmeAIII GCCGAG 2 cut(s) 37, 490
PaeR7I CTCGAG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 681
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 245
PleI GAGTC 1 cut(s) 642
PpsI GAGTC 1 cut(s) 642
PpuMI RGGWCCY 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 191, 307
PspPI GGNCC 3 cut(s) 190, 273, 306
PspPPI RGGWCCY 1 cut(s) 190
PspXI VCTCGAGB 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 5 cut(s) 182, 288, 363, 378, 605
Sau3AI GATC 1 cut(s) 488
Sau96I GGNCC 3 cut(s) 190, 273, 306
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 451, 679
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 518
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 249
TaqI TCGA 1 cut(s) 231
TasI AATT 1 cut(s) 518
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 5 cut(s) 182, 288, 363, 378, 605
Tru9I TTAA 5 cut(s) 182, 288, 363, 378, 605
TscAI CASTG 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 569, 668
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XhoI CTCGAG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.