Rroxscaffold_2G00121430

PsbP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015994
Physical Location & Seq
Forward (+)
54053877 .. 54063214
9338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121430.1

Sequence Viewer

Length: 687 bp
ATGGCTTTGCATATTTGCAATTGCTTTGCTCTCTCAAACCACAAACAAACCCACACTCAGCAACCCTGCTTCTCAAACTCAAAGCCCAAAGCTTCTTCTTCACTTCAAACACCACCTCATTTGACCAAGAGAAGCCTCAGCCTCTCACTCTTTGCAGCTGTTTTCTTTAATGGGGTCCTCCCAAACTCACCCATTTTCGCTCAAGAATTGGAGCTCGAGCGCTACACGGATTCCAAGGAGGGCTTCACTCTCCTCCGGCCCTTCTCCTGGATAAAGGTTGATAAAGCAGGGGCTACTGCTCTATTTGAAGAGGCAAGTAATGGCAGCAACAATGCTGGCGTTGTAGTCAACCCGGTTCGGCTTAACACACTTGGAGAGTTTGGCAGTCCTCAGTTTGTAGCTGATAAGCTTATACAAGCCGAAAAGCGCAAGGAAAGTACAAAAGATGCTGAAGTTATTGGAGTTGCAGAGCGATCAGGTAAGGATGGCCTACAAGTGTACGAATTTGAGTATAAGATTGATAGCACTAGGGGAGGGATGAAGAGAATCTTTTCTGCCGCATTTGTCGCCTCAAAGAAGCTCTACCTCTTAAATATTACTCACTCAGACAAACCAGAGAGCCCTCTTAACCCACATACAAGACTGATGTTGGAACAAGCTCTTCATTCTTTTGATGCAACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

228

Amino Acids

25.19

Weight (kDa)

8.71

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 72 - 225 5.5e-30 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28605
fragaria_vesca FvH4_1g24980
malus_domestica MD01G1000300.v1.1
prunus_persica Prupe.4G276300_v2.0.a1
pyrus_communis pycom420g00070
rosa_chinensis RchiOBHm_Chr2g0122611
rosa_laevigata RLG00000018695
rosa_multiflora Rmu_sc0003133.1_g000009
rosa_roxburghii Rroxscaffold_2G00121430
rosa_rugosa Rorug02G0240100
rosa_samantha Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana Rw2G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 558
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 2 cut(s) 439, 500
AfeI AGCGCT 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 107, 308
AjnI CCWGG 1 cut(s) 266
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 7 cut(s) 92, 158, 214, 401, 409, 580, 659
AluI AGCT 7 cut(s) 92, 158, 214, 401, 409, 580, 659
Alw21I GWGCWC 1 cut(s) 216
Ama87I CYCGRG 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 221
AoxI GGCC 2 cut(s) 257, 487
ApeKI GCWGC 2 cut(s) 155, 324
ApoI RAATTY 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 550
AspLEI GCGC 2 cut(s) 222, 429
AspS9I GGNCC 2 cut(s) 175, 258
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 2 cut(s) 216, 623
Bbv12I GWGCWC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 167, 336
BccI CCATC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 353
BfaI CTAG 1 cut(s) 528
BfoI RGCGCY 1 cut(s) 223
BisI GCNGC 3 cut(s) 156, 325, 558
BlsI GCNGC 3 cut(s) 157, 326, 559
Bme1390I CCNGG 2 cut(s) 268, 353
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 175, 258
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 268, 353
BmsI GCATC 2 cut(s) 436, 664
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 490, 543
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 4 cut(s) 71, 151, 404, 618
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 167, 336
BshFI GGCC 2 cut(s) 259, 489
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 256, 353
BslI CCNNNNNNNGG 1 cut(s) 267
BsnI GGCC 2 cut(s) 259, 489
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 216, 623
Bsp143I GATC 1 cut(s) 473
BspACI CCGC 1 cut(s) 558
BspANI GGCC 2 cut(s) 259, 489
BspCNI CTCAG 4 cut(s) 70, 150, 403, 617
BspLI GGNNCC 1 cut(s) 176
BspQI GCTCTTC 1 cut(s) 666
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 473
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 268
Bst6I CTCTTC 3 cut(s) 303, 536, 666
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 4 cut(s) 57, 137, 390, 604
BstF5I GGATG 2 cut(s) 490, 543
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 2 cut(s) 222, 429
BstKTI GATC 1 cut(s) 476
BstMBI GATC 1 cut(s) 473
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 266, 351
BstV1I GCAGC 2 cut(s) 167, 336
BsuRI GGCC 2 cut(s) 259, 489
BtsCI GGATG 2 cut(s) 490, 543
Cac8I GCNNGC 1 cut(s) 337
CfoI GCGC 2 cut(s) 222, 429
Cfr13I GGNCC 2 cut(s) 175, 258
Csp6I GTAC 2 cut(s) 438, 499
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviQI GTAC 2 cut(s) 438, 499
DdeI CTNAG 4 cut(s) 57, 137, 390, 604
DpnI GATC 1 cut(s) 475
DpnII GATC 1 cut(s) 473
Eam1104I CTCTTC 3 cut(s) 303, 536, 666
EarI CTCTTC 3 cut(s) 303, 536, 666
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 2 cut(s) 216, 623
Eco47I GGWCC 1 cut(s) 175
Eco47III AGCGCT 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 2 cut(s) 216, 623
ErhI CCWWGG 1 cut(s) 234
FaiI YATR 4 cut(s) 12, 413, 513, 636
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 533, 565
Fnu4HI GCNGC 3 cut(s) 156, 325, 558
FokI GGATG 2 cut(s) 497, 550
FriOI GRGCYC 2 cut(s) 216, 623
Fsp4HI GCNGC 3 cut(s) 156, 325, 558
FspBI CTAG 1 cut(s) 528
GlaI GCGC 2 cut(s) 221, 428
GluI GCNGC 3 cut(s) 156, 325, 558
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 2 cut(s) 259, 489
HapII CCGG 2 cut(s) 256, 353
HhaI GCGC 2 cut(s) 222, 429
Hin6I GCGC 2 cut(s) 220, 427
HinP1I GCGC 2 cut(s) 220, 427
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 2 cut(s) 90, 407
HinfI GANTC 2 cut(s) 230, 546
HpaII CCGG 2 cut(s) 256, 353
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 349, 499
Hpy188I TCNGA 1 cut(s) 607
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 349, 499
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 5 cut(s) 10, 18, 155, 467, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 4 cut(s) 57, 137, 390, 604
HspAI GCGC 2 cut(s) 220, 427
Kzo9I GATC 1 cut(s) 473
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 9 cut(s) 79, 253, 269, 273, 280, 321, 366, 462, 627
Lsp1109I GCAGC 2 cut(s) 167, 336
LweI GCATC 2 cut(s) 436, 664
MaeI CTAG 1 cut(s) 528
MalI GATC 1 cut(s) 475
MboI GATC 1 cut(s) 473
MboII GAAGA 5 cut(s) 87, 90, 320, 553, 653
MfeI CAATTG 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 216, 623
MluCI AATT 3 cut(s) 19, 206, 503
MmeI TCCRAC 1 cut(s) 630
MroXI GAANNNNTTC 1 cut(s) 550
MseI TTAA 5 cut(s) 168, 363, 590, 627, 685
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 256, 353
MspR9I CCNGG 2 cut(s) 268, 353
MunI CAATTG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 566
NciI CCSGG 1 cut(s) 353
NdeII GATC 1 cut(s) 473
NlaIV GGNNCC 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 2 cut(s) 230, 546
PfoI TCCNGGA 1 cut(s) 266
PkrI GCNGC 3 cut(s) 157, 326, 559
PpuMI RGGWCCY 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 175, 258
PspPPI RGGWCCY 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 2 cut(s) 439, 500
RsaNI GTAC 2 cut(s) 438, 499
SacI GAGCTC 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 5 cut(s) 168, 363, 590, 627, 685
SatI GCNGC 3 cut(s) 156, 325, 558
Sau3AI GATC 1 cut(s) 473
Sau96I GGNCC 2 cut(s) 175, 258
ScrFI CCNGG 2 cut(s) 268, 353
SduI GDGCHC 2 cut(s) 216, 623
SfaNI GCATC 2 cut(s) 436, 664
Sfr274I CTCGAG 1 cut(s) 215
SinI GGWCC 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 201, 215
SmoI CTYRAG 2 cut(s) 201, 215
Sse9I AATT 3 cut(s) 19, 206, 503
SsiI CCGC 1 cut(s) 558
SspI AATATT 1 cut(s) 595
SspMI CTAG 1 cut(s) 528
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 266, 351
StyI CCWWGG 1 cut(s) 234
TaqI TCGA 1 cut(s) 216
TasI AATT 3 cut(s) 19, 206, 503
TatI WGTACW 1 cut(s) 437
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 2 cut(s) 230, 546
Tru1I TTAA 5 cut(s) 168, 363, 590, 627, 685
Tru9I TTAA 5 cut(s) 168, 363, 590, 627, 685
TseI GCWGC 2 cut(s) 155, 324
TspDTI ATGAA 2 cut(s) 554, 653
TspGWI ACGGA 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 503
XhoI CTCGAG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 550
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.