Rw2G023740

PsbP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015994
Physical Location & Seq
Reverse (-)
34789463 .. 34792698
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023740.1

Sequence Viewer

Length: 699 bp
ATGGCTTTGCATATTTGCAACTGCTTTGCTCTCTCAAACCACAAACAAACCCACACTCAGCAACCCTGCTTCTCAAACTCAAACTCAAACTCAAAGCCCAAAGCTTCTTCTTCACTTCAAACACCACCTCATTTGACCAAGAGAAGCCTCAGCCTCTCACTCTTTGCAGCAGTTTTCTTAAATGGGGTCCTCCCAAACTCACCCATTTTCGCTCAAGAATTGGAGCTCGAGCGCTACACGGATTCCAAGGAGGGCTTCACTCTCCTCCGGCCCTCCTCCTGGATAAAGGTTGATAAAGCAGGGGCCACTGCTCTGTTTGAAGAGGCAAGTAATGGCAGCAACAATGCTGGCGTTGTCGTCAACCCGGTTCGGCTTAAAACACTTGGAGAGTTTGGCAGTCCTCAATTTGTAGCTGATAAGCTTATCCAAGCCGAAAAGCGCAAGGAAAGTACAAAAGAAGCTGAAGTTATTGGAGTTGCAGAGCGATCAGGTAAGGATGGCCTACAAGTGTACGAATTTGAGTATAAGATTGATAGCACTAGGGGAGGGATGAAGAGAATCTTTTCTGCCGCATTTGTCGCCTCAAAGAAGCTCTACCTCTTAAATATTACTCACTCAGACAAACCAGAGAGCCCTCTTAACCCACATACAAGACTGATGTTGGAACAAGCTCTTCATTCTTTTGATGCAACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

232

Amino Acids

25.53

Weight (kDa)

8.91

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 76 - 229 4.7e-31 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28605
fragaria_vesca FvH4_1g24980
malus_domestica MD01G1000300.v1.1
prunus_persica Prupe.4G276300_v2.0.a1
pyrus_communis pycom420g00070
rosa_chinensis RchiOBHm_Chr2g0122611
rosa_laevigata RLG00000018695
rosa_multiflora Rmu_sc0003133.1_g000009
rosa_roxburghii Rroxscaffold_2G00121430
rosa_rugosa Rorug02G0240100
rosa_samantha Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana Rw2G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 570
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 2 cut(s) 451, 512
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 2 cut(s) 119, 320
AjnI CCWGG 1 cut(s) 278
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 7 cut(s) 104, 226, 413, 421, 461, 592, 671
AluI AGCT 7 cut(s) 104, 226, 413, 421, 461, 592, 671
Alw21I GWGCWC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 3 cut(s) 269, 303, 499
ApeKI GCWGC 2 cut(s) 167, 336
ApoI RAATTY 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 562
AspLEI GCGC 2 cut(s) 234, 441
AspS9I GGNCC 3 cut(s) 187, 270, 303
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 192
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 187
BanII GRGCYC 2 cut(s) 228, 635
Bbv12I GWGCWC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 179, 348
BccI CCATC 1 cut(s) 491
BciT130I CCWGG 1 cut(s) 280
BcnI CCSGG 1 cut(s) 365
BfaI CTAG 1 cut(s) 540
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 3 cut(s) 168, 337, 570
BlsI GCNGC 3 cut(s) 169, 338, 571
Bme1390I CCNGG 2 cut(s) 280, 365
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 3 cut(s) 187, 270, 303
BmiI GGNNCC 2 cut(s) 188, 304
BmrFI CCNGG 2 cut(s) 280, 365
BmsI GCATC 1 cut(s) 676
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 502, 555
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMII CTCAG 3 cut(s) 71, 163, 630
BseRI GAGGAG 2 cut(s) 254, 265
BseXI GCAGC 2 cut(s) 179, 348
BshFI GGCC 3 cut(s) 271, 305, 501
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 2 cut(s) 268, 365
BslI CCNNNNNNNGG 1 cut(s) 279
BsnI GGCC 3 cut(s) 271, 305, 501
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 228, 635
Bsp143I GATC 1 cut(s) 485
BspACI CCGC 1 cut(s) 570
BspANI GGCC 3 cut(s) 271, 305, 501
BspCNI CTCAG 3 cut(s) 70, 162, 629
BspLI GGNNCC 2 cut(s) 188, 304
BspQI GCTCTTC 1 cut(s) 678
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 280
Bst6I CTCTTC 3 cut(s) 315, 548, 678
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 57, 149, 616
BstF5I GGATG 2 cut(s) 502, 555
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 2 cut(s) 234, 441
BstKTI GATC 1 cut(s) 488
BstMBI GATC 1 cut(s) 485
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 278, 363
BstV1I GCAGC 2 cut(s) 179, 348
BsuRI GGCC 3 cut(s) 271, 305, 501
BtsCI GGATG 2 cut(s) 502, 555
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 2 cut(s) 234, 441
Cfr13I GGNCC 3 cut(s) 187, 270, 303
Csp6I GTAC 2 cut(s) 450, 511
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviQI GTAC 2 cut(s) 450, 511
DdeI CTNAG 3 cut(s) 57, 149, 616
DpnI GATC 1 cut(s) 487
DpnII GATC 1 cut(s) 485
Eam1104I CTCTTC 3 cut(s) 315, 548, 678
EarI CTCTTC 3 cut(s) 315, 548, 678
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 2 cut(s) 228, 635
Eco47I GGWCC 1 cut(s) 187
Eco47III AGCGCT 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 2 cut(s) 228, 635
ErhI CCWWGG 1 cut(s) 246
FaiI YATR 3 cut(s) 12, 525, 648
FalI AAGNNNNNCTT 4 cut(s) 239, 271, 545, 577
Fnu4HI GCNGC 3 cut(s) 168, 337, 570
FokI GGATG 2 cut(s) 509, 562
FriOI GRGCYC 2 cut(s) 228, 635
Fsp4HI GCNGC 3 cut(s) 168, 337, 570
FspBI CTAG 1 cut(s) 540
GlaI GCGC 2 cut(s) 233, 440
GluI GCNGC 3 cut(s) 168, 337, 570
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 3 cut(s) 271, 305, 501
HapII CCGG 2 cut(s) 268, 365
HhaI GCGC 2 cut(s) 234, 441
Hin6I GCGC 2 cut(s) 232, 439
HinP1I GCGC 2 cut(s) 232, 439
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 2 cut(s) 102, 419
HinfI GANTC 2 cut(s) 242, 558
HpaII CCGG 2 cut(s) 268, 365
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 361, 511
Hpy188I TCNGA 1 cut(s) 619
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 2 cut(s) 361, 511
HpyCH4V TGCA 5 cut(s) 10, 18, 167, 479, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpyF3I CTNAG 3 cut(s) 57, 149, 616
HspAI GCGC 2 cut(s) 232, 439
Kzo9I GATC 1 cut(s) 485
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 9 cut(s) 79, 265, 281, 285, 292, 333, 378, 474, 639
Lsp1109I GCAGC 2 cut(s) 179, 348
LweI GCATC 1 cut(s) 676
MaeI CTAG 1 cut(s) 540
MalI GATC 1 cut(s) 487
MboI GATC 1 cut(s) 485
MboII GAAGA 5 cut(s) 99, 102, 332, 565, 665
MhlI GDGCHC 2 cut(s) 228, 635
MluCI AATT 3 cut(s) 218, 404, 515
MmeI TCCRAC 1 cut(s) 642
MroXI GAANNNNTTC 1 cut(s) 562
MseI TTAA 5 cut(s) 179, 375, 602, 639, 697
MspI CCGG 2 cut(s) 268, 365
MspR9I CCNGG 2 cut(s) 280, 365
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 578
NciI CCSGG 1 cut(s) 365
NdeII GATC 1 cut(s) 485
NlaIV GGNNCC 2 cut(s) 188, 304
PaeR7I CTCGAG 1 cut(s) 227
PciSI GCTCTTC 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 562
PfeI GAWTC 2 cut(s) 242, 558
PfoI TCCNGGA 1 cut(s) 278
PkrI GCNGC 3 cut(s) 169, 338, 571
PpuMI RGGWCCY 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 188, 304
PspPI GGNCC 3 cut(s) 187, 270, 303
PspPPI RGGWCCY 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 227
RsaI GTAC 2 cut(s) 451, 512
RsaNI GTAC 2 cut(s) 450, 511
SacI GAGCTC 1 cut(s) 228
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 5 cut(s) 179, 375, 602, 639, 697
SatI GCNGC 3 cut(s) 168, 337, 570
Sau3AI GATC 1 cut(s) 485
Sau96I GGNCC 3 cut(s) 187, 270, 303
ScrFI CCNGG 2 cut(s) 280, 365
SduI GDGCHC 2 cut(s) 228, 635
SfaNI GCATC 1 cut(s) 676
Sfr274I CTCGAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 213, 227
SmoI CTYRAG 2 cut(s) 213, 227
Sse9I AATT 3 cut(s) 218, 404, 515
SsiI CCGC 1 cut(s) 570
SspI AATATT 1 cut(s) 607
SspMI CTAG 1 cut(s) 540
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 278, 363
StyI CCWWGG 1 cut(s) 246
TaqI TCGA 1 cut(s) 228
TasI AATT 3 cut(s) 218, 404, 515
TatI WGTACW 1 cut(s) 449
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 2 cut(s) 242, 558
Tru1I TTAA 5 cut(s) 179, 375, 602, 639, 697
Tru9I TTAA 5 cut(s) 179, 375, 602, 639, 697
TscAI CASTG 1 cut(s) 313
TseI GCWGC 2 cut(s) 167, 336
TspDTI ATGAA 2 cut(s) 566, 665
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 515
XhoI CTCGAG 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 562
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.