Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003133.1

Orthogroup ID

OG0015994

Physical Location & Seq

Genomic Coordinates Reverse (-)

26691 .. 29942

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003133.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggctttgcatatttgcaactgctttgctctctcaaaccacaaacaaacccacactcagcaaccctgcttctcaaactcaaactcaaactcaaagcccaaagcttcttcttcacttcaaacaccacctcatttgaccaagagaagcctcagcctctcactctttgcagcagttttcttaaatggggtcctcccaaactcacccattttcgctcaagaattggagctcgagcgctacacggattccaaggagggcttcactctcctccggccctcctcctggataaaggttgataaagcaggggccactgctctgtttgaagaggcaagtaatggcagcaacaatgctggcgttgtcgtcaacccggttcggcttaaaacacttggagagtttggcagtcctcaatttgtagctgataagcttatccaagccgaaaagcgcaaggaaagtacaaaagatgctgaagttattggagttgcagagcgatcaggtaaggatggcctacaagtgtacgaatttgagtataagattgatagcactaggggagggatgaagagaatcttttctgccgcatttgtcgcctcaaagaagctctacctcttaaatattactcactcagacaaaccagagagccctcttaacccacatacaagactgatgttggaacaagctcttcattcttttgatgcaacaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

232

Amino Acids

25.51

Weight (kDa)

8.91

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28605
fragaria_vesca	FvH4_1g24980
malus_domestica	MD01G1000300.v1.1
prunus_persica	Prupe.4G276300_v2.0.a1
pyrus_communis	pycom420g00070
rosa_chinensis	RchiOBHm_Chr2g0122611
rosa_laevigata	RLG00000018695
rosa_multiflora	Rmu_sc0003133.1_g000009
rosa_roxburghii	Rroxscaffold_2G00121430
rosa_rugosa	Rorug02G0240100
rosa_samantha	Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana	Rw2G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	451, 512
AfeI	AGCGCT	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	119, 320
AjnI	CCWGG	1 cut(s)	278
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	6 cut(s)	104, 226, 413, 421, 592, 671
AluI	AGCT	6 cut(s)	104, 226, 413, 421, 592, 671
Alw21I	GWGCWC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	233
AoxI	GGCC	3 cut(s)	269, 303, 499
ApeKI	GCWGC	2 cut(s)	167, 336
ApoI	RAATTY	1 cut(s)	515
Asp700I	GAANNNNTTC	1 cut(s)	562
AspLEI	GCGC	2 cut(s)	234, 441
AspS9I	GGNCC	3 cut(s)	187, 270, 303
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	228, 635
Bbv12I	GWGCWC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	179, 348
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	365
BfaI	CTAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	235
BisI	GCNGC	3 cut(s)	168, 337, 570
BlsI	GCNGC	3 cut(s)	169, 338, 571
Bme1390I	CCNGG	2 cut(s)	280, 365
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	3 cut(s)	187, 270, 303
BmiI	GGNNCC	2 cut(s)	188, 304
BmrFI	CCNGG	2 cut(s)	280, 365
BmsI	GCATC	2 cut(s)	448, 676
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	502, 555
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	3 cut(s)	71, 163, 630
BseRI	GAGGAG	2 cut(s)	254, 265
BseXI	GCAGC	2 cut(s)	179, 348
BshFI	GGCC	3 cut(s)	271, 305, 501
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	268, 365
BslI	CCNNNNNNNGG	1 cut(s)	279
BsnI	GGCC	3 cut(s)	271, 305, 501
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	228, 635
Bsp143I	GATC	1 cut(s)	485
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	3 cut(s)	271, 305, 501
BspCNI	CTCAG	3 cut(s)	70, 162, 629
BspLI	GGNNCC	2 cut(s)	188, 304
BspQI	GCTCTTC	1 cut(s)	678
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	280
Bst6I	CTCTTC	3 cut(s)	315, 548, 678
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	57, 149, 616
BstF5I	GGATG	2 cut(s)	502, 555
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	234, 441
BstKTI	GATC	1 cut(s)	488
BstMBI	GATC	1 cut(s)	485
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	278, 363
BstV1I	GCAGC	2 cut(s)	179, 348
BsuRI	GGCC	3 cut(s)	271, 305, 501
BtsCI	GGATG	2 cut(s)	502, 555
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	349
CfoI	GCGC	2 cut(s)	234, 441
Cfr13I	GGNCC	3 cut(s)	187, 270, 303
Csp6I	GTAC	2 cut(s)	450, 511
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviQI	GTAC	2 cut(s)	450, 511
DdeI	CTNAG	3 cut(s)	57, 149, 616
DpnI	GATC	1 cut(s)	487
DpnII	GATC	1 cut(s)	485
Eam1104I	CTCTTC	3 cut(s)	315, 548, 678
EarI	CTCTTC	3 cut(s)	315, 548, 678
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	228, 635
Eco47I	GGWCC	1 cut(s)	187
Eco47III	AGCGCT	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	228, 635
ErhI	CCWWGG	1 cut(s)	246
FaiI	YATR	3 cut(s)	12, 525, 648
FalI	AAGNNNNNCTT	4 cut(s)	239, 271, 545, 577
Fnu4HI	GCNGC	3 cut(s)	168, 337, 570
FokI	GGATG	2 cut(s)	509, 562
FriOI	GRGCYC	2 cut(s)	228, 635
Fsp4HI	GCNGC	3 cut(s)	168, 337, 570
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	2 cut(s)	233, 440
GluI	GCNGC	3 cut(s)	168, 337, 570
HaeII	RGCGCY	1 cut(s)	235
HaeIII	GGCC	3 cut(s)	271, 305, 501
HapII	CCGG	2 cut(s)	268, 365
HhaI	GCGC	2 cut(s)	234, 441
Hin6I	GCGC	2 cut(s)	232, 439
HinP1I	GCGC	2 cut(s)	232, 439
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	2 cut(s)	102, 419
HinfI	GANTC	2 cut(s)	242, 558
HpaII	CCGG	2 cut(s)	268, 365
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	2 cut(s)	361, 511
Hpy188I	TCNGA	1 cut(s)	619
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	361, 511
HpyCH4V	TGCA	5 cut(s)	10, 18, 167, 479, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	3 cut(s)	57, 149, 616
HspAI	GCGC	2 cut(s)	232, 439
Kzo9I	GATC	1 cut(s)	485
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	9 cut(s)	79, 265, 281, 285, 292, 333, 378, 474, 639
Lsp1109I	GCAGC	2 cut(s)	179, 348
LweI	GCATC	2 cut(s)	448, 676
MaeI	CTAG	1 cut(s)	540
MalI	GATC	1 cut(s)	487
MboI	GATC	1 cut(s)	485
MboII	GAAGA	5 cut(s)	99, 102, 332, 565, 665
MhlI	GDGCHC	2 cut(s)	228, 635
MluCI	AATT	3 cut(s)	218, 404, 515
MmeI	TCCRAC	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	562
MseI	TTAA	5 cut(s)	179, 375, 602, 639, 697
MspI	CCGG	2 cut(s)	268, 365
MspR9I	CCNGG	2 cut(s)	280, 365
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	578
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	1 cut(s)	485
NlaIV	GGNNCC	2 cut(s)	188, 304
PaeR7I	CTCGAG	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	242, 558
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	169, 338, 571
PpuMI	RGGWCCY	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	188, 304
PspPI	GGNCC	3 cut(s)	187, 270, 303
PspPPI	RGGWCCY	1 cut(s)	187
PspXI	VCTCGAGB	1 cut(s)	227
RsaI	GTAC	2 cut(s)	451, 512
RsaNI	GTAC	2 cut(s)	450, 511
SacI	GAGCTC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	5 cut(s)	179, 375, 602, 639, 697
SatI	GCNGC	3 cut(s)	168, 337, 570
Sau3AI	GATC	1 cut(s)	485
Sau96I	GGNCC	3 cut(s)	187, 270, 303
ScrFI	CCNGG	2 cut(s)	280, 365
SduI	GDGCHC	2 cut(s)	228, 635
SfaNI	GCATC	2 cut(s)	448, 676
Sfr274I	CTCGAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	213, 227
SmoI	CTYRAG	2 cut(s)	213, 227
Sse9I	AATT	3 cut(s)	218, 404, 515
SsiI	CCGC	1 cut(s)	570
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	278, 363
StyI	CCWWGG	1 cut(s)	246
TaqI	TCGA	1 cut(s)	228
TasI	AATT	3 cut(s)	218, 404, 515
TatI	WGTACW	1 cut(s)	449
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	2 cut(s)	242, 558
Tru1I	TTAA	5 cut(s)	179, 375, 602, 639, 697
Tru9I	TTAA	5 cut(s)	179, 375, 602, 639, 697
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	2 cut(s)	167, 336
TspDTI	ATGAA	2 cut(s)	566, 665
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	515
XhoI	CTCGAG	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	562
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.