Rorug02G0240100

PsbP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015994
Physical Location & Seq
Reverse (-)
24588942 .. 24591447
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0240100.1

Sequence Viewer

Length: 732 bp
ATGTACCGGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGTTAACCTTGATGTGAAAGGTGATGATGGGAATGACTCTGAGTTTACTGGAGATGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACGTCTCTGAACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGTGCTAGTTCAGGGAAGACAATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTCTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGACCATCCTGTTATATATCGCCCTACAGGTGCCAACCGCTATTTCACATTGTGCGCTACTGACTTTTTAGCTATTGGTGGGGGTCGTCATTTTGCACTCTATTTGAACAGTGATCTATTGTGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTTTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGCCGTATGGAGGCACGTGGGATTTGCCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

243

Amino Acids

27.41

Weight (kDa)

8.29

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 55 - 220 4.5e-40 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28605
fragaria_vesca FvH4_1g24980
malus_domestica MD01G1000300.v1.1
prunus_persica Prupe.4G276300_v2.0.a1
pyrus_communis pycom420g00070
rosa_chinensis RchiOBHm_Chr2g0122611
rosa_laevigata RLG00000018695
rosa_multiflora Rmu_sc0003133.1_g000009
rosa_roxburghii Rroxscaffold_2G00121430
rosa_rugosa Rorug02G0240100
rosa_samantha Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana Rw2G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccB1I GGYRCC 2 cut(s) 379, 476
AccBSI CCGCTC 1 cut(s) 43
AciI CCGC 2 cut(s) 43, 484
AclWI GGATC 1 cut(s) 580
AcvI CACGTG 1 cut(s) 713
AcyI GRCGYC 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 498
AfaI GTAC 3 cut(s) 5, 262, 687
AfiI CCNNNNNNNGG 1 cut(s) 706
AgsI TTSAA 2 cut(s) 288, 553
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 4 cut(s) 295, 327, 473, 505
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw26I GTCTC 2 cut(s) 166, 336
AlwI GGATC 1 cut(s) 580
AoxI GGCC 2 cut(s) 314, 319
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 80
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BanI GGYRCC 2 cut(s) 379, 476
BbrPI CACGTG 1 cut(s) 713
BbsI GAAGAC 2 cut(s) 244, 630
BccI CCATC 3 cut(s) 68, 459, 720
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 2 cut(s) 166, 336
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 471
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmcAI AGTACT 1 cut(s) 687
Bme1390I CCNGG 2 cut(s) 8, 318
BmiI GGNNCC 2 cut(s) 381, 478
BmrFI CCNGG 2 cut(s) 8, 318
BmrI ACTGGG 1 cut(s) 215
BmuI ACTGGG 1 cut(s) 215
BpiI GAAGAC 2 cut(s) 244, 630
BpmI CTGGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 713
BsaHI GRCGYC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 706
Bse1I ACTGG 2 cut(s) 100, 221
BseBI CCWGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 1 cut(s) 706
BseMII CTCAG 4 cut(s) 78, 177, 337, 633
BseNI ACTGG 2 cut(s) 100, 221
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 2 cut(s) 316, 321
BshNI GGYRCC 2 cut(s) 379, 476
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 706
BsmAI GTCTC 2 cut(s) 166, 336
BsmBI CGTCTC 1 cut(s) 166
BsnI GGCC 2 cut(s) 316, 321
Bso31I GGTCTC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 559, 572
BspACI CCGC 2 cut(s) 43, 484
BspANI GGCC 2 cut(s) 316, 321
BspCNI CTCAG 4 cut(s) 79, 178, 336, 632
BspLI GGNNCC 2 cut(s) 381, 478
BspPI GGATC 1 cut(s) 580
BspT107I GGYRCC 2 cut(s) 379, 476
BspTNI GGTCTC 1 cut(s) 336
BsrBI CCGCTC 1 cut(s) 43
BsrI ACTGG 2 cut(s) 100, 221
BssMI GATC 2 cut(s) 559, 572
BssNI GRCGYC 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 212, 347, 557
BstACI GRCGYC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 713
BstDEI CTNAG 6 cut(s) 87, 186, 323, 386, 619, 672
BstF5I GGATG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 2 cut(s) 562, 575
BstMAI GTCTC 2 cut(s) 166, 336
BstMBI GATC 2 cut(s) 559, 572
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 6, 316
BstSFI CTRYAG 1 cut(s) 471
BstV2I GAAGAC 2 cut(s) 244, 630
BsuRI GGCC 2 cut(s) 316, 321
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 2 cut(s) 228, 562
CfoI GCGC 1 cut(s) 503
Csp6I GTAC 3 cut(s) 4, 261, 686
CviAII CATG 3 cut(s) 264, 272, 606
CviJI RGCY 8 cut(s) 11, 133, 140, 316, 321, 369, 518, 699
CviKI_1 RGCY 8 cut(s) 11, 133, 140, 316, 321, 369, 518, 699
CviQI GTAC 3 cut(s) 4, 261, 686
DdeI CTNAG 6 cut(s) 87, 186, 323, 386, 619, 672
DpnI GATC 2 cut(s) 561, 574
DpnII GATC 2 cut(s) 559, 572
DraIII CACNNNGTG 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 336
Eco72I CACGTG 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 3 cut(s) 267, 275, 609
FatI CATG 3 cut(s) 263, 271, 605
FauNDI CATATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 438
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 502
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 2 cut(s) 316, 321
HapII CCGG 1 cut(s) 7
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 3 cut(s) 267, 275, 609
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 3 cut(s) 34, 83, 601
HpaI GTTAAC 1 cut(s) 52
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 3 cut(s) 52, 93, 215
Hpy188I TCNGA 5 cut(s) 33, 88, 166, 589, 622
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 3 cut(s) 52, 93, 215
HpyAV CCTTC 2 cut(s) 40, 180
HpyCH4III ACNGT 3 cut(s) 212, 347, 557
HpyCH4IV ACGT 2 cut(s) 159, 712
HpyCH4V TGCA 5 cut(s) 14, 118, 356, 542, 614
HpyF3I CTNAG 6 cut(s) 87, 186, 323, 386, 619, 672
HpySE526I ACGT 2 cut(s) 159, 712
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 3 cut(s) 267, 275, 609
HspAI GCGC 1 cut(s) 501
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 559, 572
MaeI CTAG 1 cut(s) 227
MaeII ACGT 2 cut(s) 159, 712
MaeIII GTNAC 1 cut(s) 249
MalI GATC 2 cut(s) 561, 574
MbiI CCGCTC 1 cut(s) 43
MboI GATC 2 cut(s) 559, 572
MboII GAAGA 3 cut(s) 249, 312, 635
MluCI AATT 1 cut(s) 198
MlyI GAGTC 2 cut(s) 43, 77
MnlI CCTC 7 cut(s) 102, 261, 332, 370, 393, 673, 700
Mph1103I ATGCAT 1 cut(s) 120
MseI TTAA 1 cut(s) 51
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 2 cut(s) 8, 318
MvaI CCWGG 1 cut(s) 318
NciI CCSGG 1 cut(s) 8
NdeI CATATG 1 cut(s) 114
NdeII GATC 2 cut(s) 559, 572
NlaIII CATG 3 cut(s) 267, 275, 609
NlaIV GGNNCC 2 cut(s) 381, 478
NsiI ATGCAT 1 cut(s) 120
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 2 cut(s) 42, 77
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 2 cut(s) 42, 77
Ppu21I YACGTR 1 cut(s) 713
Psp6I CCWGG 1 cut(s) 316
PspCI CACGTG 1 cut(s) 713
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 381, 478
PsrI GAACNNNNNNTAC 4 cut(s) 159, 191, 406, 438
RsaI GTAC 3 cut(s) 5, 262, 687
RsaNI GTAC 3 cut(s) 4, 261, 686
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 559, 572
ScaI AGTACT 1 cut(s) 687
SchI GAGTC 2 cut(s) 43, 77
ScrFI CCNGG 2 cut(s) 8, 318
SfcI CTRYAG 1 cut(s) 471
Sse9I AATT 1 cut(s) 198
SsiI CCGC 2 cut(s) 43, 484
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 6, 316
TaaI ACNGT 3 cut(s) 212, 347, 557
TaiI ACGT 2 cut(s) 162, 715
TasI AATT 1 cut(s) 198
TatI WGTACW 2 cut(s) 260, 685
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 2 cut(s) 228, 562
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 2 cut(s) 228, 562
XspI CTAG 1 cut(s) 227
ZraI GACGTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 687
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.