Rh2DG322200

PsbP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015994
Physical Location & Seq
Reverse (-)
40273925 .. 40277073
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG322200.1

Sequence Viewer

Length: 693 bp
ATGGCTTTGCATATTTGCAACTGCTTTGCTCTCTCAAACCACAAACAAACCCACACTCAGCAACCCTGCTTCTCAAACTCAAACTCAAAGCCCAAAGCTTCTTCTTCACTTCAAACACCACCTCATTTGACCAAGAGAAGCCTCAGCCTCTCACTCTTTGCAGCAGTTTTCTTAAATGGGGTCCTCCCAAACTCACCCATTTTCGCTCAAGAATTGGAGCTCAAGCGCTACACGGATTCCAAGGAGGGCTTCACTCTCCTCCGGCCCTCCTCCTGGATAAAGGTTGATAAAGCAGGGGCCACTGCTCTGTTTGAAGAGGCAAGTAATGGCAGCAACAATGCTGGCGTTGTCGTCAACCCGGTTCGGCTTAAAACACTTGGAGAGTTTGGCAGTCCTCAATTTGTAGCTGATAAGCTTATCCAAGCCGAAAAGCGCAAGGAAAGTACAAAAGATGCTGAAGTTATTGGAGTTGCAGAGCGATCAGGTAAGGATGGCCTACAAGTGTACGAATTTGAGTATAAGATTGATAGCACTAGGGGAGGGATGAAGAGAATCTTTTCTGCCGCATTTGTCGCCTCAAAGAAGCTCTACCTCTTAAATATTACTCACTCAGACAAACCAGAGAGTCCTCTTAACCCACATACAAGACTGATGTTGGAACAGGCTCTTCATTCTTTTGATGCAACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

230

Amino Acids

25.31

Weight (kDa)

9.2

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 74 - 227 6.5e-31 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28605
fragaria_vesca FvH4_1g24980
malus_domestica MD01G1000300.v1.1
prunus_persica Prupe.4G276300_v2.0.a1
pyrus_communis pycom420g00070
rosa_chinensis RchiOBHm_Chr2g0122611
rosa_laevigata RLG00000018695
rosa_multiflora Rmu_sc0003133.1_g000009
rosa_roxburghii Rroxscaffold_2G00121430
rosa_rugosa Rorug02G0240100
rosa_samantha Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana Rw2G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 564
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 2 cut(s) 445, 506
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 2 cut(s) 113, 314
AjnI CCWGG 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 5 cut(s) 98, 220, 407, 415, 586
AluI AGCT 5 cut(s) 98, 220, 407, 415, 586
Alw21I GWGCWC 1 cut(s) 222
Aor51HI AGCGCT 1 cut(s) 227
AoxI GGCC 3 cut(s) 263, 297, 493
ApeKI GCWGC 2 cut(s) 161, 330
ApoI RAATTY 1 cut(s) 509
Asp700I GAANNNNTTC 1 cut(s) 556
AspLEI GCGC 2 cut(s) 228, 435
AspS9I GGNCC 3 cut(s) 181, 264, 297
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 173, 342
BccI CCATC 1 cut(s) 485
BciT130I CCWGG 1 cut(s) 274
BcnI CCSGG 1 cut(s) 359
BfaI CTAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 229
BisI GCNGC 3 cut(s) 162, 331, 564
BlsI GCNGC 3 cut(s) 163, 332, 565
Bme1390I CCNGG 2 cut(s) 274, 359
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 3 cut(s) 181, 264, 297
BmiI GGNNCC 2 cut(s) 182, 298
BmrFI CCNGG 2 cut(s) 274, 359
BmsI GCATC 2 cut(s) 442, 670
Bpu10I CCTNAGC 1 cut(s) 143
BpuEI CTTGAG 2 cut(s) 192, 206
BpuMI CCSGG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 496, 549
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 71, 157, 624
BseRI GAGGAG 2 cut(s) 248, 259
BseXI GCAGC 2 cut(s) 173, 342
BshFI GGCC 3 cut(s) 265, 299, 495
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 2 cut(s) 262, 359
BslI CCNNNNNNNGG 1 cut(s) 273
BsnI GGCC 3 cut(s) 265, 299, 495
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 479
BspACI CCGC 1 cut(s) 564
BspANI GGCC 3 cut(s) 265, 299, 495
BspCNI CTCAG 3 cut(s) 70, 156, 623
BspLI GGNNCC 2 cut(s) 182, 298
BspQI GCTCTTC 1 cut(s) 672
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 479
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 274
Bst6I CTCTTC 3 cut(s) 309, 542, 672
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 57, 143, 610
BstF5I GGATG 2 cut(s) 496, 549
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 2 cut(s) 228, 435
BstKTI GATC 1 cut(s) 482
BstMBI GATC 1 cut(s) 479
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 272, 357
BstV1I GCAGC 2 cut(s) 173, 342
BsuRI GGCC 3 cut(s) 265, 299, 495
BtsCI GGATG 2 cut(s) 496, 549
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 343
CfoI GCGC 2 cut(s) 228, 435
Cfr13I GGNCC 3 cut(s) 181, 264, 297
Csp6I GTAC 2 cut(s) 444, 505
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviQI GTAC 2 cut(s) 444, 505
DdeI CTNAG 3 cut(s) 57, 143, 610
DpnI GATC 1 cut(s) 481
DpnII GATC 1 cut(s) 479
Eam1104I CTCTTC 3 cut(s) 309, 542, 672
EarI CTCTTC 3 cut(s) 309, 542, 672
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 181
Eco47III AGCGCT 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 240
FaiI YATR 3 cut(s) 12, 519, 642
FalI AAGNNNNNCTT 4 cut(s) 233, 265, 539, 571
Fnu4HI GCNGC 3 cut(s) 162, 331, 564
FokI GGATG 2 cut(s) 503, 556
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 162, 331, 564
FspBI CTAG 1 cut(s) 534
GlaI GCGC 2 cut(s) 227, 434
GluI GCNGC 3 cut(s) 162, 331, 564
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 3 cut(s) 265, 299, 495
HapII CCGG 2 cut(s) 262, 359
HhaI GCGC 2 cut(s) 228, 435
Hin6I GCGC 2 cut(s) 226, 433
HinP1I GCGC 2 cut(s) 226, 433
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 2 cut(s) 96, 413
HinfI GANTC 3 cut(s) 236, 552, 625
HpaII CCGG 2 cut(s) 262, 359
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 2 cut(s) 355, 505
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 355, 505
HpyCH4V TGCA 5 cut(s) 10, 18, 161, 473, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 3 cut(s) 57, 143, 610
HspAI GCGC 2 cut(s) 226, 433
Kzo9I GATC 1 cut(s) 479
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 2 cut(s) 173, 342
LweI GCATC 2 cut(s) 442, 670
MaeI CTAG 1 cut(s) 534
MalI GATC 1 cut(s) 481
MboI GATC 1 cut(s) 479
MboII GAAGA 5 cut(s) 93, 96, 326, 559, 659
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 3 cut(s) 212, 398, 509
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 1 cut(s) 636
MroXI GAANNNNTTC 1 cut(s) 556
MseI TTAA 5 cut(s) 173, 369, 596, 633, 691
MspI CCGG 2 cut(s) 262, 359
MspR9I CCNGG 2 cut(s) 274, 359
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 572
NciI CCSGG 1 cut(s) 359
NdeII GATC 1 cut(s) 479
NlaIV GGNNCC 2 cut(s) 182, 298
PciSI GCTCTTC 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 556
PfeI GAWTC 2 cut(s) 236, 552
PfoI TCCNGGA 1 cut(s) 272
PkrI GCNGC 3 cut(s) 163, 332, 565
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
PpuMI RGGWCCY 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 182, 298
PspPI GGNCC 3 cut(s) 181, 264, 297
PspPPI RGGWCCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 445, 506
RsaNI GTAC 2 cut(s) 444, 505
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 5 cut(s) 173, 369, 596, 633, 691
SatI GCNGC 3 cut(s) 162, 331, 564
Sau3AI GATC 1 cut(s) 479
Sau96I GGNCC 3 cut(s) 181, 264, 297
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 2 cut(s) 274, 359
SduI GDGCHC 1 cut(s) 222
SetI ASST 9 cut(s) 100, 124, 222, 285, 409, 417, 487, 588, 594
SfaNI GCATC 2 cut(s) 442, 670
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 2 cut(s) 207, 221
SmoI CTYRAG 2 cut(s) 207, 221
Sse9I AATT 3 cut(s) 212, 398, 509
SsiI CCGC 1 cut(s) 564
SspI AATATT 1 cut(s) 601
SspMI CTAG 1 cut(s) 534
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 272, 357
StyI CCWWGG 1 cut(s) 240
TasI AATT 3 cut(s) 212, 398, 509
TatI WGTACW 1 cut(s) 443
TauI GCSGC 1 cut(s) 566
TfiI GAWTC 2 cut(s) 236, 552
Tru1I TTAA 5 cut(s) 173, 369, 596, 633, 691
Tru9I TTAA 5 cut(s) 173, 369, 596, 633, 691
TscAI CASTG 1 cut(s) 307
TseI GCWGC 2 cut(s) 161, 330
TspDTI ATGAA 2 cut(s) 560, 659
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 556
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.