Rh2BG307400

PsbP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015994
Physical Location & Seq
Reverse (-)
35748788 .. 35752014
3227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG307400.1

Sequence Viewer

Length: 702 bp
ATGGCTTTGCATATTTGCAACTGCTTTGCTCTCTCAAACCATAAACAAACCCACACTCAGCAACCCTGCTTCTCAAACTCAAACTCAAAGCCCAAAGCTTCTTCTTCACTTCAAACACCACCTCATTTGAGTGATTTGACCAAGAGAAGCCTCAGCCTCTCACTCTTTGCAGCAGTTTTCTTAAATGGGGTCCTCCCAAACTCACCCATTTGCGCTCAAGAATTGGAGCTCGAGCGCTACACGGATTCCAAGGAGGGCTTCACTCTCCTCCGGCCCTCCTCCTGGATAAAGGTTGATAAAGCAGGGGCCACTGCTCTGTTTGAAGAGGCAAGTAATGGCAGCAACAATGCTGGCGTTGTCGTCAACCCGGTTCGGCTTAAAACACTTGGAGAGTTTGGCAGTCCTCAGTTTGTAGCTGATAAGCTTATCCAAGCCGAAAAGCGCAAGGAAAGTACAAAAGATGCTGAAGTTATTGGAGTTGCAGAGCGAACGGGTAAGGATGGCCTACAAGTGTACGAATTTGAGTATAAGATTGATAGCACTAGGGGAGGGATGAAGAGAATCTTTTCTGCCGCATTTGTCGCCTCAAAGAAGCTCTACCTCTTAAATATTACTCACTCAGACAAACCAGAGAGCCCTCTTAACCCACATACAAGACTGATGTTGGAACAGGCTCTTCATTCTTTTGATGCAACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

233

Amino Acids

25.6

Weight (kDa)

8.61

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 77 - 230 8.9e-31 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28605
fragaria_vesca FvH4_1g24980
malus_domestica MD01G1000300.v1.1
prunus_persica Prupe.4G276300_v2.0.a1
pyrus_communis pycom420g00070
rosa_chinensis RchiOBHm_Chr2g0122611
rosa_laevigata RLG00000018695
rosa_multiflora Rmu_sc0003133.1_g000009
rosa_roxburghii Rroxscaffold_2G00121430
rosa_rugosa Rorug02G0240100
rosa_samantha Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana Rw2G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 573
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 2 cut(s) 454, 515
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 113, 323
AjnI CCWGG 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 5 cut(s) 98, 229, 416, 424, 595
AluI AGCT 5 cut(s) 98, 229, 416, 424, 595
Alw21I GWGCWC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 3 cut(s) 272, 306, 502
ApeKI GCWGC 2 cut(s) 170, 339
ApoI RAATTY 1 cut(s) 518
Asp700I GAANNNNTTC 1 cut(s) 565
AspLEI GCGC 3 cut(s) 215, 237, 444
AspS9I GGNCC 3 cut(s) 190, 273, 306
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 195
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 190
BanII GRGCYC 2 cut(s) 231, 638
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 182, 351
BccI CCATC 1 cut(s) 494
BciT130I CCWGG 1 cut(s) 283
BcnI CCSGG 1 cut(s) 368
BfaI CTAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 3 cut(s) 171, 340, 573
BlsI GCNGC 3 cut(s) 172, 341, 574
Bme1390I CCNGG 2 cut(s) 283, 368
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 3 cut(s) 190, 273, 306
BmiI GGNNCC 2 cut(s) 191, 307
BmrFI CCNGG 2 cut(s) 283, 368
BmsI GCATC 2 cut(s) 451, 679
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 505, 558
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 4 cut(s) 71, 166, 419, 633
BseRI GAGGAG 2 cut(s) 257, 268
BseXI GCAGC 2 cut(s) 182, 351
BshFI GGCC 3 cut(s) 274, 308, 504
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 2 cut(s) 271, 368
BslI CCNNNNNNNGG 1 cut(s) 282
BsnI GGCC 3 cut(s) 274, 308, 504
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 231, 638
BspACI CCGC 1 cut(s) 573
BspANI GGCC 3 cut(s) 274, 308, 504
BspCNI CTCAG 4 cut(s) 70, 165, 418, 632
BspLI GGNNCC 2 cut(s) 191, 307
BspQI GCTCTTC 1 cut(s) 681
BssECI CCNNGG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 283
Bst6I CTCTTC 3 cut(s) 318, 551, 681
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 4 cut(s) 57, 152, 405, 619
BstF5I GGATG 2 cut(s) 505, 558
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 3 cut(s) 215, 237, 444
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 281, 366
BstV1I GCAGC 2 cut(s) 182, 351
BsuRI GGCC 3 cut(s) 274, 308, 504
BtsCI GGATG 2 cut(s) 505, 558
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 3 cut(s) 215, 237, 444
Cfr13I GGNCC 3 cut(s) 190, 273, 306
Csp6I GTAC 2 cut(s) 453, 514
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviQI GTAC 2 cut(s) 453, 514
DdeI CTNAG 4 cut(s) 57, 152, 405, 619
Eam1104I CTCTTC 3 cut(s) 318, 551, 681
EarI CTCTTC 3 cut(s) 318, 551, 681
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 2 cut(s) 231, 638
Eco47I GGWCC 1 cut(s) 190
Eco47III AGCGCT 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 2 cut(s) 231, 638
ErhI CCWWGG 1 cut(s) 249
FaiI YATR 4 cut(s) 12, 42, 528, 651
FalI AAGNNNNNCTT 4 cut(s) 242, 274, 548, 580
Fnu4HI GCNGC 3 cut(s) 171, 340, 573
FokI GGATG 2 cut(s) 512, 565
FriOI GRGCYC 2 cut(s) 231, 638
Fsp4HI GCNGC 3 cut(s) 171, 340, 573
FspBI CTAG 1 cut(s) 543
GlaI GCGC 3 cut(s) 214, 236, 443
GluI GCNGC 3 cut(s) 171, 340, 573
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 3 cut(s) 274, 308, 504
HapII CCGG 2 cut(s) 271, 368
HhaI GCGC 3 cut(s) 215, 237, 444
Hin6I GCGC 3 cut(s) 213, 235, 442
HinP1I GCGC 3 cut(s) 213, 235, 442
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 2 cut(s) 96, 422
HinfI GANTC 2 cut(s) 245, 561
HpaII CCGG 2 cut(s) 271, 368
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 2 cut(s) 364, 514
Hpy188I TCNGA 1 cut(s) 622
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 364, 514
HpyCH4V TGCA 5 cut(s) 10, 18, 170, 482, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 4 cut(s) 57, 152, 405, 619
HspAI GCGC 3 cut(s) 213, 235, 442
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 9 cut(s) 79, 268, 284, 288, 295, 336, 381, 642, 656
Lsp1109I GCAGC 2 cut(s) 182, 351
LweI GCATC 2 cut(s) 451, 679
MaeI CTAG 1 cut(s) 543
MboII GAAGA 5 cut(s) 93, 96, 335, 568, 668
MhlI GDGCHC 2 cut(s) 231, 638
MluCI AATT 2 cut(s) 221, 518
MmeI TCCRAC 1 cut(s) 645
MroXI GAANNNNTTC 1 cut(s) 565
MseI TTAA 5 cut(s) 182, 378, 605, 642, 700
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 2 cut(s) 271, 368
MspR9I CCNGG 2 cut(s) 283, 368
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 368
NlaIV GGNNCC 2 cut(s) 191, 307
PaeR7I CTCGAG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 681
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 2 cut(s) 245, 561
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 3 cut(s) 172, 341, 574
PpuMI RGGWCCY 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 191, 307
PspPI GGNCC 3 cut(s) 190, 273, 306
PspPPI RGGWCCY 1 cut(s) 190
PspXI VCTCGAGB 1 cut(s) 230
RsaI GTAC 2 cut(s) 454, 515
RsaNI GTAC 2 cut(s) 453, 514
RseI CAYNNNNRTG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 5 cut(s) 182, 378, 605, 642, 700
SatI GCNGC 3 cut(s) 171, 340, 573
Sau96I GGNCC 3 cut(s) 190, 273, 306
ScrFI CCNGG 2 cut(s) 283, 368
SduI GDGCHC 2 cut(s) 231, 638
SetI ASST 8 cut(s) 100, 124, 231, 294, 418, 426, 597, 603
SfaNI GCATC 2 cut(s) 451, 679
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 216, 230
SmoI CTYRAG 2 cut(s) 216, 230
Sse9I AATT 2 cut(s) 221, 518
SsiI CCGC 1 cut(s) 573
SspI AATATT 1 cut(s) 610
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 281, 366
StyI CCWWGG 1 cut(s) 249
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 221, 518
TatI WGTACW 1 cut(s) 452
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 2 cut(s) 245, 561
Tru1I TTAA 5 cut(s) 182, 378, 605, 642, 700
Tru9I TTAA 5 cut(s) 182, 378, 605, 642, 700
TscAI CASTG 1 cut(s) 316
TseI GCWGC 2 cut(s) 170, 339
TspDTI ATGAA 2 cut(s) 569, 668
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 518
XhoI CTCGAG 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 565
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.