Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012759

Physical Location & Seq

Genomic Coordinates Reverse (-)

12367001 .. 12368064

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28815.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCAGAGATTCATGTTTAGCCGCGTCGTGGAACATCAACGTCAGATAAGCCGAGGATTTCTCAGTCTTGTACCATCTCTATCTCCCACTGCTGTTCCTGCTATGTCTCGTTTCTTTCCGAAGATTACTGCTTCTGATTCCACTTCCTCGATTCCCTTTTTTACTCCAGACTTCATCAATCCCAAGAAGACTCTTGAAGAGTCCCTTAACAACTTAGAAGGCCTAACATGTAACCAAGCCGAAAGAGAGATGTATCTCTTTCCACAGATTAATCAACAACGCCTTCTCAACACCACTGGTTCTCGCTTCGGACAGGTTCTTGGAACTTGGCAGTTCAGATGCACAATTCTTCCGGCGAGAGTGAATCGTGTGAGAGAGGTCCACGAGACTTCCAACAACGAAAAGAAACAACAAAAACAAAAAAGTTCCGTCAACGAAAAGAAACCAAAAAAAAAAAAAAAGAGTTCCATCAGCGATATCCCAAGAAGAACAAAGTTTCAGAAACATCATCGAGGAAGAATTAATAAAGGAGTATCTTCTCAGGGGTATATTTGTAGTAGATATGCTCTTCAAACACTTGAACCAGCTTGGATCACTTCTAGACAAATAGAAGCAGGACGACGAGCAATGACACGAAATATAGGACGTGGTTTAACTGTTCGAGTTCATATATTTGCAGACAAACCAGTTACAGTAAGACCTCCTGAAACGCGTATGGGTCGTGGGAAAGGAGCTCCAGCGTTTTGGGTAGCTGTGGTTAAACCAGGTAAAATCATTTATGAAATGGGTGGTGTTTCCGAAAAAGTAGCTAGAGAAGCTATTTCTATAGCCGCATCAAAGTTGCCTGCAAAAACCAAATTCATCATTTCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004842 GO:0005102 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0015934 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019843 GO:0022625 GO:0022626 GO:0031347 GO:0031348 GO:0032446 GO:0032991 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048586 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0080134 GO:0097159 GO:0098542 GO:0140096 GO:1901363 GO:1901564 GO:1990904 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

291

Amino Acids

32.98

Weight (kDa)

10.94

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L16	PF00252	161 - 288	7e-41	Ribosomal protein L16p/L10e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28815 ATCG00790 ATCG00800
malus_domestica	MD14G1153600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118541 RchiOBHm_Chr2g0118571
rosa_laevigata	RLG00000000057 RLG00000000073 RLG00000000179 RLG00000000217 RLG00000037101
rosa_roxburghii	Rroxscaffold_2G00118980 Rroxscaffold_2G00118990 Rroxscaffold_2G00119190
rosa_samantha	Rh1CG032400 Rh1CG032500 Rh4BG101400
rosa_wichuraiana	Rw7G013520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	24, 712
AciI	CCGC	2 cut(s)	22, 831
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	857
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	28
AflIII	ACRYGT	2 cut(s)	227, 710
AgsI	TTSAA	3 cut(s)	197, 572, 581
AjiI	CACGTC	1 cut(s)	647
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	5 cut(s)	587, 734, 752, 809, 818
AluI	AGCT	5 cut(s)	587, 734, 752, 809, 818
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	2 cut(s)	111, 380
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	857
AseI	ATTAAT	2 cut(s)	270, 522
AspS9I	GGNCC	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	736
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	736
BccI	CCATC	2 cut(s)	82, 476
BciT130I	CCWGG	1 cut(s)	765
BcoDI	GTCTC	2 cut(s)	111, 380
BfaI	CTAG	2 cut(s)	600, 810
BfmI	CTRYAG	1 cut(s)	825
BisI	GCNGC	2 cut(s)	22, 831
BlsI	GCNGC	2 cut(s)	23, 832
Bme1390I	CCNGG	1 cut(s)	765
Bme18I	GGWCC	1 cut(s)	379
BmgBI	CACGTC	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	2 cut(s)	329, 842
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BpmI	CTGGAG	2 cut(s)	150, 720
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	301, 686
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	2 cut(s)	76, 554
BseNI	ACTGG	2 cut(s)	301, 686
Bsh1236I	CGCG	2 cut(s)	24, 712
BshFI	GGCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	736
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	111, 380
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp143I	GATC	1 cut(s)	591
BspACI	CCGC	2 cut(s)	22, 831
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	75, 553
BspFNI	CGCG	2 cut(s)	24, 712
BspPI	GGATC	1 cut(s)	599
BspQI	GCTCTTC	1 cut(s)	573
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	2 cut(s)	301, 686
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	591
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	2 cut(s)	658, 694
Bst6I	CTCTTC	2 cut(s)	192, 573
BstC8I	GCNNGC	1 cut(s)	846
BstDEI	CTNAG	3 cut(s)	62, 214, 540
BstFNI	CGCG	2 cut(s)	24, 712
BstKTI	GATC	1 cut(s)	594
BstMAI	GTCTC	2 cut(s)	111, 380
BstMBI	GATC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 815
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	2 cut(s)	24, 712
BstV2I	GAAGAC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	744
BsuRI	GGCC	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	647
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 294
Cac8I	GCNNGC	1 cut(s)	846
Cfr13I	GGNCC	1 cut(s)	379
CseI	GACGC	1 cut(s)	13
CsiI	ACCWGGT	1 cut(s)	763
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	2 cut(s)	13, 228
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	3 cut(s)	62, 214, 540
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
Eam1104I	CTCTTC	2 cut(s)	192, 573
EarI	CTCTTC	2 cut(s)	192, 573
Ecl136II	GAGCTC	1 cut(s)	734
Eco147I	AGGCCT	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	736
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	379
Eco53kI	GAGCTC	1 cut(s)	734
EcoICRI	GAGCTC	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	763
EcoRV	GATATC	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	736
FaeI	CATG	2 cut(s)	16, 231
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	12, 227
Fnu4HI	GCNGC	2 cut(s)	22, 831
FriOI	GRGCYC	1 cut(s)	736
Fsp4HI	GCNGC	2 cut(s)	22, 831
FspBI	CTAG	2 cut(s)	600, 810
GluI	GCNGC	2 cut(s)	22, 831
GsuI	CTGGAG	2 cut(s)	150, 720
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	16, 231
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	6 cut(s)	9, 137, 151, 190, 200, 364
HpaII	CCGG	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	382, 433
Hpy188I	TCNGA	7 cut(s)	45, 120, 136, 311, 338, 501, 799
Hpy188III	TCNNGA	4 cut(s)	167, 194, 600, 704
Hpy8I	GTNNAC	2 cut(s)	382, 433
Hpy99I	CGWCG	2 cut(s)	29, 624
HpyAV	CCTTC	2 cut(s)	212, 293
HpyCH4III	ACNGT	2 cut(s)	658, 694
HpyCH4IV	ACGT	2 cut(s)	40, 646
HpyCH4V	TGCA	4 cut(s)	4, 342, 677, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 815
HpyF3I	CTNAG	3 cut(s)	62, 214, 540
HpySE526I	ACGT	2 cut(s)	40, 646
Hsp92II	CATG	2 cut(s)	16, 231
Kzo9I	GATC	1 cut(s)	591
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	2 cut(s)	731, 739
LweI	GCATC	2 cut(s)	329, 842
MabI	ACCWGGT	1 cut(s)	763
MaeI	CTAG	2 cut(s)	600, 810
MaeII	ACGT	2 cut(s)	40, 646
MaeIII	GTNAC	2 cut(s)	230, 688
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MboII	GAAGA	8 cut(s)	133, 199, 209, 341, 498, 528, 528, 560
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	3 cut(s)	345, 519, 857
MluI	ACGCGT	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	184, 209
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	47, 157, 370, 506, 711
MseI	TTAA	5 cut(s)	207, 270, 522, 653, 759
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	765
MvnI	CGCG	2 cut(s)	24, 712
MwoI	GCNNNNNNNGC	2 cut(s)	98, 815
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	2 cut(s)	16, 231
NmeAIII	GCCGAG	1 cut(s)	77
NspI	RCATGY	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	222
PciI	ACATGT	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	573
PfeI	GAWTC	4 cut(s)	9, 137, 151, 364
PkrI	GCNGC	2 cut(s)	23, 832
PleI	GAGTC	2 cut(s)	184, 208
PpsI	GAGTC	2 cut(s)	184, 208
PscI	ACATGT	1 cut(s)	227
PshBI	ATTAAT	2 cut(s)	270, 522
Psp124BI	GAGCTC	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	763
PspPI	GGNCC	1 cut(s)	379
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	736
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	5 cut(s)	207, 270, 522, 653, 759
SatI	GCNGC	2 cut(s)	22, 831
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	2 cut(s)	184, 209
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	736
SexAI	ACCWGGT	1 cut(s)	763
SfaNI	GCATC	2 cut(s)	329, 842
SfcI	CTRYAG	1 cut(s)	825
SinI	GGWCC	1 cut(s)	379
Sse9I	AATT	3 cut(s)	345, 519, 857
SseBI	AGGCCT	1 cut(s)	222
SsiI	CCGC	2 cut(s)	22, 831
SspMI	CTAG	2 cut(s)	600, 810
SstI	GAGCTC	1 cut(s)	736
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	2 cut(s)	658, 694
TaiI	ACGT	2 cut(s)	43, 649
TaqI	TCGA	3 cut(s)	149, 511, 661
TasI	AATT	3 cut(s)	345, 519, 857
TauI	GCSGC	2 cut(s)	24, 833
TfiI	GAWTC	4 cut(s)	9, 137, 151, 364
Tru1I	TTAA	5 cut(s)	207, 270, 522, 653, 759
Tru9I	TTAA	5 cut(s)	207, 270, 522, 653, 759
TscAI	CASTG	2 cut(s)	94, 301
TspDTI	ATGAA	4 cut(s)	163, 656, 795, 850
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	2 cut(s)	94, 301
VpaK11BI	GGWCC	1 cut(s)	379
VspI	ATTAAT	2 cut(s)	270, 522
XapI	RAATTY	1 cut(s)	857
XbaI	TCTAGA	1 cut(s)	599
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	2 cut(s)	600, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.