Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012759

Physical Location & Seq

Genomic Coordinates Forward (+)

6296963 .. 6297619

Gene Structure 657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG032400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTGCAACCCAAAGTCATCATTCACTTTGGTTTGCACAACCAAAAAATTATTCCGAGGATCTACAAGAAGATCAAAAAATACGAGATTGTATCAAAAATTATGTACAAAAAAATCTGAAAATATCCTCTAATGTCGAGGGAATTGCACGTATAGAGATTCAAAAAAGAATCGATTTGATTCAAGTCATAATCTATATGGGATTCCCCAAGTTATTAATAGAAGACGGGACTCGCAAAATCGAAGAATTACAGTTCAATGTACAAAAAGAACTCAATTGTGTAAACCGAAAACTCAACATTGCTATTACAAGAATCGTAAACCCTTATGGGCACCCCAATATTCTTGCGGAATTTATAGCCGGACAATTAAAAAATAGAGTTTCATTTCGCAAAGCAATGAAAAAGGCTATTGAATTAACTGAGCAGGCAGGTACAAAAGGAATTCAAGTACAAATTGCAGGGCGTATCGACGAAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGCAGGGTTCCTCTACAAACCATTCGAGCCAAAATAGATTATTGTTCCTACGCAGTTCGAACTATCTATGGGGTATTAGGTATCAAAATTTGGATATTTGTAGACGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S3_C

Protein Analysis

218

Amino Acids

25.17

Weight (kDa)

9.45

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3_C	PF00189	131 - 213	1.7e-29	Ribosomal protein S3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28815 ATCG00790 ATCG00800
malus_domestica	MD14G1153600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118541 RchiOBHm_Chr2g0118571
rosa_laevigata	RLG00000000057 RLG00000000073 RLG00000000179 RLG00000000217 RLG00000037101
rosa_roxburghii	Rroxscaffold_2G00118980 Rroxscaffold_2G00118990 Rroxscaffold_2G00119190
rosa_samantha	Rh1CG032400 Rh1CG032500 Rh4BG101400
rosa_wichuraiana	Rw7G013520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	1 cut(s)	383
AclWI	GGATC	2 cut(s)	102, 542
AcsI	RAATTY	3 cut(s)	386, 477, 630
AcvI	CACGTG	1 cut(s)	524
AfaI	GTAC	4 cut(s)	141, 297, 469, 486
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	5 cut(s)	197, 218, 292, 449, 482
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AlwI	GGATC	2 cut(s)	102, 542
ApoI	RAATTY	3 cut(s)	386, 477, 630
AseI	ATTAAT	1 cut(s)	251
AsuII	TTCGAA	1 cut(s)	601
BaeGI	GKGCMC	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	366
BbrPI	CACGTG	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BfuAI	ACCTGC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	368, 552
BpiI	GAAGAC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	601
Bsa29I	ATCGAT	1 cut(s)	207
BsaAI	YACGTR	2 cut(s)	185, 524
BsaJI	CCNNGG	1 cut(s)	90
Bse3DI	GCAATG	2 cut(s)	333, 438
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	90
BseMI	GCAATG	2 cut(s)	333, 438
BseMII	CTCAG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	369
BshNI	GGYRCC	1 cut(s)	366
BshVI	ATCGAT	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	2 cut(s)	18, 277
BsmFI	GGGAC	2 cut(s)	18, 277
Bsp119I	TTCGAA	1 cut(s)	601
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp1407I	TGTACA	2 cut(s)	139, 295
Bsp143I	GATC	3 cut(s)	94, 106, 534
BspACI	CCGC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	448
BspDI	ATCGAT	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	368, 552
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	102, 542
BspT104I	TTCGAA	1 cut(s)	601
BspT107I	GGYRCC	1 cut(s)	366
BsrDI	GCAATG	2 cut(s)	333, 438
BsrGI	TGTACA	2 cut(s)	139, 295
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	3 cut(s)	94, 106, 534
Bst4CI	ACNGT	1 cut(s)	288
BstAUI	TGTACA	2 cut(s)	139, 295
BstBAI	YACGTR	2 cut(s)	185, 524
BstBI	TTCGAA	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	1 cut(s)	456
BstKTI	GATC	3 cut(s)	97, 109, 537
BstMBI	GATC	3 cut(s)	94, 106, 534
BstSLI	GKGCMC	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	462
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	4 cut(s)	140, 296, 468, 485
CviJI	RGCY	3 cut(s)	395, 443, 572
CviKI_1	RGCY	3 cut(s)	395, 443, 572
CviQI	GTAC	4 cut(s)	140, 296, 468, 485
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	3 cut(s)	96, 108, 536
DpnII	GATC	3 cut(s)	94, 106, 534
Eco72I	CACGTG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	477
FaiI	YATR	8 cut(s)	138, 188, 224, 231, 233, 363, 392, 612
FaqI	GGGAC	2 cut(s)	18, 277
FblI	GTMKAC	1 cut(s)	645
HapII	CCGG	1 cut(s)	396
HinfI	GANTC	6 cut(s)	193, 204, 214, 237, 265, 348
HpaII	CCGG	1 cut(s)	396
Hpy166II	GTNNAC	3 cut(s)	319, 355, 646
Hpy188I	TCNGA	4 cut(s)	32, 91, 153, 539
Hpy8I	GTNNAC	3 cut(s)	319, 355, 646
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4IV	ACGT	2 cut(s)	184, 523
HpyCH4V	TGCA	5 cut(s)	41, 71, 182, 494, 521
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	2 cut(s)	184, 523
Kzo9I	GATC	3 cut(s)	94, 106, 534
LpnPI	CCDG	5 cut(s)	409, 446, 450, 480, 532
MaeII	ACGT	2 cut(s)	184, 523
MalI	GATC	3 cut(s)	96, 108, 536
MboI	GATC	3 cut(s)	94, 106, 534
MboII	GAAGA	3 cut(s)	116, 269, 290
MfeI	CAATTG	1 cut(s)	310
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	4 cut(s)	85, 166, 172, 564
MseI	TTAA	3 cut(s)	251, 404, 452
MspI	CCGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	310
NdeII	GATC	3 cut(s)	94, 106, 534
NlaIV	GGNNCC	2 cut(s)	368, 552
NspV	TTCGAA	1 cut(s)	601
PfeI	GAWTC	5 cut(s)	193, 204, 214, 237, 348
PleI	GAGTC	1 cut(s)	259
PmaCI	CACGTG	1 cut(s)	524
PmlI	CACGTG	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	259
Ppu21I	YACGTR	2 cut(s)	185, 524
PshBI	ATTAAT	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	524
PspN4I	GGNNCC	2 cut(s)	368, 552
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	4 cut(s)	141, 297, 469, 486
RsaNI	GTAC	4 cut(s)	140, 296, 468, 485
SaqAI	TTAA	3 cut(s)	251, 404, 452
Sau3AI	GATC	3 cut(s)	94, 106, 534
SchI	GAGTC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	4 cut(s)	187, 469, 526, 625
SfuI	TTCGAA	1 cut(s)	601
SsiI	CCGC	1 cut(s)	383
SspI	AATATT	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	288
TaiI	ACGT	2 cut(s)	187, 526
TaqI	TCGA	7 cut(s)	171, 207, 276, 504, 528, 568, 601
TatI	WGTACW	3 cut(s)	139, 295, 484
TfiI	GAWTC	5 cut(s)	193, 204, 214, 237, 348
Tru1I	TTAA	3 cut(s)	251, 404, 452
Tru9I	TTAA	3 cut(s)	251, 404, 452
TspDTI	ATGAA	2 cut(s)	408, 449
VspI	ATTAAT	1 cut(s)	251
XapI	RAATTY	3 cut(s)	386, 477, 630
XmiI	GTMKAC	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.